Wall clock time and date at job start Tue Mar 9 2021 13:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37848 * 125.89379 * 2 1 4 4 C 1.47105 * 127.02535 * 359.96389 * 3 2 1 5 5 O 1.21544 * 120.00212 * 0.02562 * 4 3 2 6 6 O 1.34790 * 119.99689 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99877 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47089 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47064 * 179.97438 * 8 7 6 10 10 O 1.42965 * 109.47158 * 299.99656 * 8 7 6 11 11 C 1.43089 * 113.76880 * 178.79357 * 10 8 7 12 12 C 1.53258 * 108.94690 * 302.03141 * 11 10 8 13 13 H 1.08999 * 109.67944 * 294.65446 * 12 11 10 14 14 N 1.46503 * 109.57807 * 174.33082 * 12 11 10 15 15 C 1.34524 * 124.45774 * 120.63786 * 14 12 11 16 16 O 1.21453 * 125.70963 * 359.97438 * 15 14 12 17 17 C 1.47810 * 108.58056 * 180.24432 * 15 14 12 18 18 C 1.40954 * 105.87965 * 359.57494 * 17 15 14 19 19 C 1.38556 * 119.82165 * 180.16364 * 18 17 15 20 20 C 1.38618 * 119.71983 * 359.57828 * 19 18 17 21 21 C 1.38232 * 120.45614 * 0.60824 * 20 19 18 22 22 C 1.38561 * 134.30136 * 179.73829 * 17 15 14 23 23 C 1.34519 * 124.46271 * 300.61731 * 14 12 11 24 24 O 1.21451 * 125.70564 * 0.02562 * 23 14 12 25 25 C 1.53262 * 108.84424 * 54.52346 * 12 11 10 26 26 O 1.42973 * 109.47260 * 59.99903 * 8 7 6 27 27 C 1.46744 * 105.94849 * 180.22316 * 3 2 1 28 28 C 1.34442 * 106.37458 * 359.62984 * 27 3 2 29 29 C 1.50692 * 125.45625 * 180.09902 * 28 27 3 30 30 O 1.42902 * 109.46966 * 120.31765 * 29 28 27 31 31 Si 1.86301 * 109.47514 * 0.31928 * 29 28 27 32 32 N 1.34621 * 125.89571 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47012 * 89.99869 * 1 2 3 34 34 H 1.09000 * 109.47288 * 210.00445 * 1 2 3 35 35 H 1.09003 * 109.47140 * 330.00069 * 1 2 3 36 36 H 1.08994 * 109.47304 * 59.99698 * 7 6 4 37 37 H 1.09007 * 109.46922 * 300.00072 * 7 6 4 38 38 H 1.09005 * 109.55905 * 182.19250 * 11 10 8 39 39 H 1.09006 * 109.55822 * 61.87081 * 11 10 8 40 40 H 1.08000 * 120.14105 * 180.30037 * 19 18 17 41 41 H 1.07998 * 119.77475 * 180.18491 * 20 19 18 42 42 H 1.08006 * 119.76976 * 179.58073 * 21 20 19 43 43 H 1.08004 * 120.13737 * 0.02562 * 22 17 15 44 44 H 1.09004 * 109.55647 * 65.31546 * 25 12 11 45 45 H 1.08994 * 109.55779 * 185.53256 * 25 12 11 46 46 H 1.07997 * 126.81281 * 179.76970 * 27 3 2 47 47 H 1.09000 * 109.47571 * 240.31489 * 29 28 27 48 48 H 0.96703 * 114.00388 * 299.99769 * 30 29 28 49 49 H 1.48497 * 110.00358 * 179.97438 * 31 29 28 50 50 H 1.48502 * 109.99997 * 301.31918 * 31 29 28 51 51 H 0.97001 * 124.81046 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1167 0.0000 4 6 1.8831 2.5229 -0.0007 5 8 0.6985 2.7947 -0.0010 6 8 2.8011 3.5099 -0.0001 7 6 2.3026 4.8737 -0.0003 8 6 3.4823 5.8479 -0.0002 9 1 3.1081 6.8716 -0.0008 10 8 4.2786 5.6318 1.1673 11 6 5.4280 6.4804 1.2466 12 6 6.2933 6.2639 0.0004 13 1 6.6878 5.2479 -0.0006 14 7 7.4024 7.2212 0.0005 15 6 8.7033 6.8788 -0.0054 16 8 9.1378 5.7447 -0.0110 17 6 9.5154 8.1138 0.0028 18 6 8.5945 9.1809 0.0037 19 6 9.0544 10.4879 0.0074 20 6 10.4180 10.7366 0.0191 21 6 11.3211 9.6901 0.0145 22 6 10.8756 8.3775 0.0064 23 6 7.2539 8.5581 0.0060 24 8 6.1956 9.1538 0.0121 25 6 5.4285 6.4802 -1.2464 26 8 4.2792 5.6315 -1.1674 27 6 3.6946 0.6161 -0.0055 28 6 3.6109 -0.7257 0.0000 29 6 4.7816 -1.6745 -0.0005 30 8 4.7276 -2.4983 1.1660 31 14 6.3701 -0.7011 -0.0003 32 7 2.2963 -1.0905 0.0005 33 1 -0.3633 0.0000 -1.0276 34 1 -0.3634 -0.8899 0.5139 35 1 -0.3633 0.8900 0.5138 36 1 1.6947 5.0384 0.8892 37 1 1.6957 5.0385 -0.8907 38 1 6.0039 6.2324 2.1383 39 1 5.1100 7.5220 1.2937 40 1 8.3533 11.3095 0.0129 41 1 10.7774 11.7550 0.0250 42 1 12.3813 9.8966 0.0169 43 1 11.5858 7.5638 0.0024 44 1 5.1106 7.5217 -1.2937 45 1 6.0054 6.2338 -2.1377 46 1 4.5979 1.2082 -0.0105 47 1 4.7402 -2.3022 -0.8907 48 1 4.7602 -2.0055 1.9974 49 1 7.5323 -1.6255 -0.0002 50 1 6.4240 0.1832 -1.1920 51 1 1.9758 -2.0061 0.0013 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_9864948_13594054.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:34:21 Heat of formation + Delta-G solvation = -154.197424 kcal Electronic energy + Delta-G solvation = -41865.078258 eV Core-core repulsion = 36278.005612 eV Total energy + Delta-G solvation = -5587.072647 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.144 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.69203 -42.54348 -41.43199 -40.76082 -39.93028 -39.45716 -37.83220 -37.44993 -37.12456 -37.06672 -34.52542 -33.01356 -32.50123 -32.15344 -31.60563 -29.89410 -29.06338 -27.47189 -26.33715 -26.11649 -25.32580 -24.35845 -23.47815 -23.35519 -22.29880 -21.62794 -21.01392 -20.75685 -19.29102 -19.12841 -18.96315 -18.81089 -18.21395 -17.74941 -17.66808 -17.35441 -17.18930 -17.01323 -16.82443 -16.52413 -16.43210 -16.17961 -16.14193 -15.85525 -15.47453 -15.43066 -15.31805 -15.29151 -15.05563 -14.75592 -14.73018 -14.68212 -14.38927 -14.19111 -14.09818 -13.95909 -13.78991 -13.43271 -13.36400 -13.27032 -13.01659 -12.77463 -12.67656 -12.43419 -12.21974 -12.17830 -12.12491 -11.75319 -11.69022 -11.64232 -11.47659 -10.93875 -10.83829 -10.71840 -10.24946 -10.23501 -10.06131 -9.29853 -4.97895 -1.10039 -0.05075 0.36338 0.89179 0.90035 1.07800 1.20095 1.55090 1.63330 1.65805 1.89875 2.14409 2.22449 2.28217 2.29737 2.46043 2.58213 3.08758 3.17800 3.24923 3.43422 3.46985 3.49020 3.54877 3.67474 3.74140 3.82374 3.91922 4.01733 4.05095 4.07267 4.08500 4.13809 4.15650 4.19846 4.23522 4.30920 4.36068 4.41577 4.44524 4.46298 4.57656 4.64471 4.71946 4.81357 4.86961 4.89076 5.07130 5.19040 5.26121 5.33102 5.37102 5.47065 5.52946 5.66192 5.74937 5.76013 5.93755 6.36224 6.36589 6.65352 6.81271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.134 3.866 3 C -0.257 4.257 4 C 0.540 3.460 5 O -0.543 6.543 6 O -0.342 6.342 7 C 0.082 3.918 8 C 0.242 3.758 9 H 0.108 0.892 10 O -0.381 6.381 11 C 0.052 3.948 12 C 0.075 3.925 13 H 0.121 0.879 14 N -0.569 5.569 15 C 0.576 3.424 16 O -0.487 6.487 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.043 4.043 20 C -0.084 4.084 21 C -0.084 4.084 22 C -0.045 4.045 23 C 0.576 3.424 24 O -0.481 6.481 25 C 0.050 3.950 26 O -0.385 6.385 27 C -0.143 4.143 28 C -0.016 4.016 29 C -0.040 4.040 30 O -0.553 6.553 31 Si 0.781 3.219 32 N -0.518 5.518 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.156 0.844 41 H 0.176 0.824 42 H 0.176 0.824 43 H 0.153 0.847 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.158 0.842 47 H 0.118 0.882 48 H 0.398 0.602 49 H -0.286 1.286 50 H -0.291 1.291 51 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.473 4.932 2.013 7.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.013 3.987 3 C -0.265 4.265 4 C 0.389 3.611 5 O -0.436 6.436 6 O -0.259 6.259 7 C 0.008 3.992 8 C 0.148 3.852 9 H 0.125 0.875 10 O -0.301 6.301 11 C -0.026 4.026 12 C -0.027 4.027 13 H 0.139 0.861 14 N -0.313 5.313 15 C 0.367 3.633 16 O -0.359 6.359 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.061 4.061 20 C -0.102 4.102 21 C -0.102 4.102 22 C -0.063 4.063 23 C 0.367 3.633 24 O -0.354 6.354 25 C -0.027 4.027 26 O -0.305 6.305 27 C -0.166 4.166 28 C -0.125 4.125 29 C -0.151 4.151 30 O -0.361 6.361 31 Si 0.685 3.315 32 N -0.115 5.115 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.173 0.827 41 H 0.193 0.807 42 H 0.193 0.807 43 H 0.171 0.829 44 H 0.093 0.907 45 H 0.130 0.870 46 H 0.176 0.824 47 H 0.135 0.865 48 H 0.249 0.751 49 H -0.213 1.213 50 H -0.218 1.218 51 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 5.317 3.946 1.163 6.723 hybrid contribution -0.783 -0.387 -0.513 1.013 sum 4.534 3.558 0.650 5.800 Atomic orbital electron populations 1.20687 0.85184 1.05168 1.04456 1.20893 0.94450 0.85081 0.98299 1.19410 0.94482 0.88633 1.23999 1.20310 0.83266 0.85926 0.71647 1.90791 1.18624 1.84902 1.49280 1.86659 1.39131 1.15890 1.84174 1.23223 0.93833 0.77008 1.05137 1.23851 0.87248 0.98336 0.75806 0.87531 1.88238 1.37620 1.62020 1.42190 1.23035 0.86477 0.95616 0.97434 1.22599 0.86907 0.94359 0.98796 0.86117 1.46466 1.08265 1.08418 1.68194 1.18768 0.81850 0.89120 0.73550 1.90826 1.76080 1.24028 1.45001 1.20438 0.95937 0.91835 1.08030 1.20454 0.91760 0.96059 1.08004 1.21160 0.97374 0.93935 0.93673 1.21964 0.91290 1.02103 0.94852 1.21954 1.02733 0.90630 0.94864 1.21158 0.92150 0.99230 0.93783 1.18730 0.89776 0.81162 0.73598 1.90795 1.32270 1.67372 1.44926 1.23019 0.86554 0.95589 0.97520 1.88240 1.37670 1.62048 1.42501 1.21966 0.96122 0.92780 1.05712 1.20903 0.85470 0.94549 1.11603 1.24780 1.01954 0.96678 0.91641 1.86460 1.96827 1.36409 1.16370 0.93135 0.72497 0.78369 0.87451 1.41516 1.05125 1.09114 1.55751 0.89288 0.88563 0.89518 0.87647 0.88012 0.86445 0.90717 0.82667 0.80663 0.80708 0.82882 0.90705 0.86952 0.82418 0.86471 0.75125 1.21289 1.21769 0.72550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.00 9.90 71.24 0.71 0.70 16 2 C 0.13 0.48 7.22 42.04 0.30 0.78 16 3 C -0.26 -2.14 6.33 -18.82 -0.12 -2.26 16 4 C 0.54 6.21 7.95 70.15 0.56 6.77 16 5 O -0.54 -7.55 14.67 19.69 0.29 -7.26 16 6 O -0.34 -3.66 9.92 -50.71 -0.50 -4.16 16 7 C 0.08 0.46 5.56 71.98 0.40 0.86 16 8 C 0.24 1.14 3.59 71.98 0.26 1.40 16 9 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 10 O -0.38 -2.44 10.44 -122.14 -1.27 -3.71 16 11 C 0.05 0.17 6.32 72.07 0.46 0.63 16 12 C 0.08 0.31 3.08 45.16 0.14 0.45 16 13 H 0.12 0.72 7.59 -2.39 -0.02 0.70 16 14 N -0.57 -2.11 2.53 -739.56 -1.87 -3.98 16 15 C 0.58 2.87 8.02 86.82 0.70 3.56 16 16 O -0.49 -5.02 17.44 -3.57 -0.06 -5.08 16 17 C -0.16 -0.04 6.40 -20.00 -0.13 -0.16 16 18 C -0.16 0.05 6.40 -20.00 -0.13 -0.08 16 19 C -0.04 0.25 10.09 22.44 0.23 0.47 16 20 C -0.08 0.88 10.04 22.36 0.22 1.10 16 21 C -0.08 0.86 10.04 22.36 0.22 1.08 16 22 C -0.04 0.23 10.09 22.44 0.23 0.45 16 23 C 0.58 2.00 7.35 86.82 0.64 2.64 16 24 O -0.48 -3.25 15.16 -3.56 -0.05 -3.31 16 25 C 0.05 0.21 6.33 72.07 0.46 0.66 16 26 O -0.39 -2.80 10.44 -122.14 -1.28 -4.07 16 27 C -0.14 -0.74 9.47 23.63 0.22 -0.52 16 28 C -0.02 -0.02 6.47 40.97 0.27 0.24 16 29 C -0.04 0.04 3.08 71.23 0.22 0.26 16 30 O -0.55 0.86 12.88 -148.98 -1.92 -1.06 16 31 Si 0.78 -0.09 30.55 68.60 2.10 2.01 16 32 N -0.52 0.16 5.89 -170.37 -1.00 -0.84 16 33 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H 0.09 0.36 6.51 -2.39 -0.02 0.34 16 36 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.12 0.15 8.14 -2.38 -0.02 0.13 16 39 H 0.07 0.24 6.65 -2.38 -0.02 0.23 16 40 H 0.16 -1.31 8.06 -2.91 -0.02 -1.34 16 41 H 0.18 -2.88 8.06 -2.91 -0.02 -2.91 16 42 H 0.18 -2.82 8.06 -2.91 -0.02 -2.85 16 43 H 0.15 -1.13 8.06 -2.91 -0.02 -1.15 16 44 H 0.07 0.28 6.69 -2.38 -0.02 0.27 16 45 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 46 H 0.16 0.64 6.20 -2.91 -0.02 0.62 16 47 H 0.12 -0.15 7.96 -2.39 -0.02 -0.17 16 48 H 0.40 -3.39 8.70 -74.06 -0.64 -4.03 16 49 H -0.29 -1.62 7.11 99.48 0.71 -0.91 16 50 H -0.29 -1.91 7.11 99.48 0.71 -1.20 16 51 H 0.43 -2.39 8.96 -92.71 -0.83 -3.22 16 Total: 0.00 -27.41 436.35 -0.13 -27.54 By element: Atomic # 1 Polarization: -14.71 SS G_CDS: -0.39 Total: -15.11 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 5.84 Total: 19.05 kcal Atomic # 7 Polarization: -1.95 SS G_CDS: -2.88 Total: -4.83 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -4.80 Total: -28.66 kcal Atomic # 14 Polarization: -0.09 SS G_CDS: 2.10 Total: 2.01 kcal Total: -27.41 -0.13 -27.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_9864948_13594054.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.661 kcal (2) G-P(sol) polarization free energy of solvation -27.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds