Wall clock time and date at job start Tue Mar 9 2021 13:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00333 * 2 1 4 4 H 1.09004 * 112.84859 * 20.33277 * 3 2 1 5 5 C 1.53781 * 113.61738 * 151.52536 * 3 2 1 6 6 C 1.53777 * 87.08005 * 139.98131 * 5 3 2 7 7 H 1.08999 * 113.61188 * 89.11949 * 6 5 3 8 8 N 1.46507 * 113.61550 * 219.93508 * 6 5 3 9 9 C 1.46498 * 119.99843 * 60.00175 * 8 6 5 10 10 C 1.34771 * 119.99732 * 240.00257 * 8 6 5 11 11 O 1.21697 * 120.00552 * 5.35296 * 10 8 6 12 12 C 1.46664 * 119.99593 * 185.35163 * 10 8 6 13 13 C 1.36541 * 125.98567 * 186.29537 * 12 10 8 14 14 C 1.50700 * 126.64699 * 0.02562 * 13 12 10 15 15 C 1.40373 * 106.70406 * 179.97438 * 13 12 10 16 16 C 1.35124 * 107.11517 * 0.02562 * 15 13 12 17 17 C 1.50699 * 125.61503 * 179.97438 * 16 15 13 18 18 O 1.42905 * 109.47237 * 89.99569 * 17 16 15 19 19 C 1.35904 * 116.99734 * 179.97438 * 18 17 16 20 20 C 1.38733 * 120.05583 * 359.73128 * 19 18 17 21 21 C 1.38146 * 119.93823 * 179.74281 * 20 19 18 22 22 C 1.38260 * 120.05717 * 0.50551 * 21 20 19 23 23 C 1.50705 * 119.94262 * 179.74699 * 22 21 20 24 24 O 1.42902 * 109.46803 * 245.01942 * 23 22 21 25 25 Si 1.86298 * 109.47208 * 5.02035 * 23 22 21 26 26 C 1.38265 * 120.11656 * 359.76746 * 22 21 20 27 27 C 1.38151 * 120.04936 * 359.97438 * 26 22 21 28 28 O 1.33929 * 108.76946 * 359.75449 * 16 15 13 29 29 C 1.53776 * 113.61559 * 249.13500 * 3 2 1 30 30 H 1.08998 * 109.47047 * 300.00087 * 1 2 3 31 31 H 1.08998 * 109.47357 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46739 * 60.00236 * 1 2 3 33 33 H 1.08998 * 113.61712 * 254.53691 * 5 3 2 34 34 H 1.09003 * 113.61288 * 25.35107 * 5 3 2 35 35 H 1.09002 * 109.46598 * 95.29577 * 9 8 6 36 36 H 1.08994 * 109.47217 * 215.29913 * 9 8 6 37 37 H 1.09004 * 109.47435 * 335.30073 * 9 8 6 38 38 H 1.09000 * 109.46958 * 90.00191 * 14 13 12 39 39 H 1.09001 * 109.46544 * 209.99845 * 14 13 12 40 40 H 1.08993 * 109.47029 * 329.99831 * 14 13 12 41 41 H 1.08001 * 126.43798 * 180.02562 * 15 13 12 42 42 H 1.08995 * 109.47048 * 209.99997 * 17 16 15 43 43 H 1.09000 * 109.47436 * 329.99748 * 17 16 15 44 44 H 1.07998 * 120.02995 * 359.97438 * 20 19 18 45 45 H 1.08001 * 119.97099 * 180.22832 * 21 20 19 46 46 H 1.09001 * 109.47009 * 125.02269 * 23 22 21 47 47 H 0.96700 * 113.99962 * 60.00753 * 24 23 22 48 48 H 1.48501 * 110.00059 * 58.68303 * 25 23 22 49 49 H 1.48501 * 109.99896 * 180.02562 * 25 23 22 50 50 H 1.08000 * 119.97729 * 179.97438 * 26 22 21 51 51 H 1.08000 * 120.02310 * 179.97438 * 27 26 22 52 52 H 1.08997 * 113.61474 * 334.56577 * 29 3 2 53 53 H 1.09003 * 113.61276 * 105.46513 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3220 2.0752 0.3490 5 6 3.3923 1.3644 0.6718 6 6 3.8121 2.3228 -0.4552 7 1 3.6169 3.3716 -0.2317 8 7 5.1720 2.0897 -0.9478 9 6 5.5292 0.7918 -1.5258 10 6 6.0943 3.0692 -0.8692 11 8 5.8274 4.1123 -0.3020 12 6 7.4198 2.8780 -1.4672 13 6 8.4801 3.7313 -1.3575 14 6 8.5101 5.0366 -0.6050 15 6 9.5370 3.1564 -2.0805 16 6 9.0811 1.9926 -2.5938 17 6 9.8773 1.0369 -3.4445 18 8 10.5358 0.0866 -2.6046 19 6 11.3010 -0.8538 -3.2187 20 6 11.4112 -0.8651 -4.6016 21 6 12.1940 -1.8188 -5.2231 22 6 12.8587 -2.7678 -4.4688 23 6 13.7073 -3.8105 -5.1498 24 8 13.1375 -5.1032 -4.9345 25 14 13.7757 -3.4585 -6.9779 26 6 12.7460 -2.7622 -3.0907 27 6 11.9687 -1.8073 -2.4641 28 8 7.8065 1.8258 -2.2179 29 6 2.7193 1.6640 -1.3166 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 3.3792 1.8288 1.6578 34 1 3.9250 0.4134 0.6590 35 1 5.4283 0.8369 -2.6102 36 1 6.5598 0.5499 -1.2665 37 1 4.8651 0.0229 -1.1309 38 1 8.8279 4.8567 0.4220 39 1 9.2103 5.7182 -1.0879 40 1 7.5139 5.4789 -0.6049 41 1 10.5283 3.5672 -2.2034 42 1 9.2080 0.5151 -4.1284 43 1 10.6204 1.5924 -4.0166 44 1 10.8886 -0.1267 -5.1915 45 1 12.2831 -1.8258 -6.2994 46 1 14.7158 -3.7847 -4.7368 47 1 12.2384 -5.1987 -5.2774 48 1 14.3370 -2.1040 -7.2137 49 1 14.6092 -4.4802 -7.6610 50 1 13.2659 -3.5048 -2.5037 51 1 11.8806 -1.8036 -1.3877 52 1 3.0681 0.7955 -1.8752 53 1 2.1635 2.3701 -1.9336 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10122440_4549632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:09 Heat of formation + Delta-G solvation = -56.500593 kcal Electronic energy + Delta-G solvation = -35415.451750 eV Core-core repulsion = 30609.009034 eV Total energy + Delta-G solvation = -4806.442716 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.181 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.98192 -41.47741 -41.25139 -39.84088 -39.20278 -37.61170 -37.16880 -35.62503 -34.91103 -33.14030 -32.03943 -31.49932 -28.99781 -28.57254 -28.30159 -27.55874 -26.76646 -26.21877 -25.18149 -23.97220 -22.68420 -22.46641 -22.10708 -20.64937 -20.34122 -19.46166 -18.87100 -18.35817 -18.22329 -17.68307 -17.40812 -17.03696 -16.87940 -16.72613 -16.55372 -16.27455 -16.05850 -15.86640 -15.69927 -15.44766 -15.15929 -14.98919 -14.64611 -14.56296 -14.41083 -14.32350 -14.22383 -14.04946 -13.91485 -13.72481 -13.58016 -13.50106 -13.42470 -13.24610 -13.04255 -12.83803 -12.71952 -12.29873 -12.25090 -12.05591 -12.02511 -11.95180 -11.83035 -11.74030 -11.27894 -10.80409 -10.50420 -10.39375 -10.02745 -10.01246 -9.62979 -9.22680 -4.98751 -0.28109 0.28910 0.32162 0.96090 1.29953 1.34655 1.65421 1.76563 1.90338 1.99475 2.36544 2.67026 2.88421 3.19255 3.38342 3.45853 3.54860 3.58121 3.63276 3.73072 3.74336 3.82496 3.83523 3.96006 4.01017 4.08574 4.09184 4.26458 4.29302 4.32394 4.40688 4.45873 4.47443 4.50815 4.51052 4.55335 4.56213 4.65405 4.66515 4.69434 4.69987 4.75580 4.86733 4.90294 4.91993 4.96277 4.98905 5.01082 5.07852 5.17023 5.27069 5.27707 5.38801 5.51722 5.70496 5.70672 6.08523 6.24477 6.29908 6.77232 6.80746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.066 3.934 4 H 0.106 0.894 5 C -0.147 4.147 6 C 0.118 3.882 7 H 0.117 0.883 8 N -0.591 5.591 9 C 0.075 3.925 10 C 0.598 3.402 11 O -0.546 6.546 12 C -0.093 4.093 13 C -0.095 4.095 14 C -0.097 4.097 15 C -0.188 4.188 16 C 0.008 3.992 17 C 0.136 3.864 18 O -0.326 6.326 19 C 0.126 3.874 20 C -0.201 4.201 21 C -0.075 4.075 22 C -0.161 4.161 23 C -0.071 4.071 24 O -0.558 6.558 25 Si 0.777 3.223 26 C -0.062 4.062 27 C -0.163 4.163 28 O -0.151 6.151 29 C -0.156 4.156 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.181 0.819 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.161 0.839 45 H 0.152 0.848 46 H 0.103 0.897 47 H 0.395 0.605 48 H -0.284 1.284 49 H -0.304 1.304 50 H 0.132 0.868 51 H 0.131 0.869 52 H 0.099 0.901 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.052 -0.705 -4.864 5.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.008 3.992 4 H 0.124 0.876 5 C -0.186 4.186 6 C 0.015 3.985 7 H 0.134 0.866 8 N -0.322 5.322 9 C -0.067 4.067 10 C 0.387 3.613 11 O -0.427 6.427 12 C -0.144 4.144 13 C -0.098 4.098 14 C -0.153 4.153 15 C -0.207 4.207 16 C -0.044 4.044 17 C 0.062 3.938 18 O -0.241 6.241 19 C 0.081 3.919 20 C -0.219 4.219 21 C -0.093 4.093 22 C -0.162 4.162 23 C -0.181 4.181 24 O -0.366 6.366 25 Si 0.683 3.317 26 C -0.080 4.080 27 C -0.181 4.181 28 O -0.047 6.047 29 C -0.195 4.195 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.199 0.801 42 H 0.124 0.876 43 H 0.145 0.855 44 H 0.179 0.821 45 H 0.169 0.831 46 H 0.120 0.880 47 H 0.245 0.755 48 H -0.210 1.210 49 H -0.233 1.233 50 H 0.150 0.850 51 H 0.149 0.851 52 H 0.117 0.883 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.288 -0.486 -4.836 5.372 hybrid contribution 0.303 0.323 0.788 0.904 sum -1.985 -0.163 -4.048 4.511 Atomic orbital electron populations 1.22965 0.79669 1.03742 1.00888 1.87908 1.21313 1.27619 1.94665 1.23500 0.93809 0.85759 0.96132 0.87592 1.23682 0.95699 1.00308 0.98873 1.22462 0.79572 1.00609 0.95827 0.86559 1.47722 1.10573 1.13805 1.60063 1.22030 1.01976 0.83378 0.99302 1.16814 0.81890 0.83584 0.78980 1.90826 1.78828 1.28120 1.44914 1.21732 0.96788 0.91002 1.04918 1.20962 0.91931 0.98095 0.98810 1.20467 1.03997 0.91637 0.99188 1.21867 1.01419 0.96332 1.01107 1.22488 0.82920 0.97371 1.01627 1.21247 0.94920 0.88299 0.89302 1.86111 1.60641 1.40489 1.36857 1.19081 0.91755 0.89204 0.91885 1.21493 1.04508 1.03245 0.92671 1.21042 0.94720 0.93367 1.00140 1.20337 1.02172 0.99208 0.94475 1.25136 0.97641 0.83740 1.11607 1.86470 1.35996 1.29818 1.84356 0.93825 0.88166 0.76106 0.73576 1.20924 0.96232 0.96603 0.94260 1.20618 1.00719 0.96074 1.00734 1.84185 1.27263 1.39623 1.53677 1.23963 0.96183 1.01502 0.97825 0.93102 0.88914 0.93052 0.90055 0.88933 0.90956 0.90715 0.88871 0.90558 0.89240 0.90922 0.80147 0.87555 0.85484 0.82149 0.83070 0.87982 0.75519 1.21046 1.23253 0.84997 0.85137 0.88261 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.40 -0.95 10.71 -148.98 -1.60 -2.54 16 3 C 0.07 -0.05 4.29 31.12 0.13 0.08 16 4 H 0.11 -0.39 7.88 -2.39 -0.02 -0.40 16 5 C -0.15 -0.09 7.43 31.12 0.23 0.14 16 6 C 0.12 0.20 4.18 45.57 0.19 0.39 16 7 H 0.12 0.42 7.27 -2.39 -0.02 0.41 16 8 N -0.59 -2.27 3.08 -824.05 -2.54 -4.81 16 9 C 0.07 -0.05 8.04 127.77 1.03 0.98 16 10 C 0.60 5.27 7.63 86.44 0.66 5.93 16 11 O -0.55 -7.52 14.23 -4.34 -0.06 -7.59 16 12 C -0.09 -0.64 6.70 24.07 0.16 -0.48 16 13 C -0.10 -0.52 6.20 -19.74 -0.12 -0.64 16 14 C -0.10 -0.38 9.89 71.24 0.70 0.32 16 15 C -0.19 -0.20 10.73 22.07 0.24 0.04 16 16 C 0.01 0.00 6.94 24.97 0.17 0.18 16 17 C 0.14 -0.70 5.27 71.24 0.38 -0.33 16 18 O -0.33 -0.24 10.12 -92.47 -0.94 -1.17 16 19 C 0.13 0.00 6.69 22.51 0.15 0.15 16 20 C -0.20 0.87 9.04 22.37 0.20 1.07 16 21 C -0.08 0.31 8.66 22.25 0.19 0.51 16 22 C -0.16 0.19 5.35 -19.85 -0.11 0.09 16 23 C -0.07 0.10 2.80 71.24 0.20 0.29 16 24 O -0.56 0.12 12.83 -148.98 -1.91 -1.79 16 25 Si 0.78 -2.72 29.80 68.60 2.04 -0.68 16 26 C -0.06 -0.05 9.68 22.26 0.22 0.16 16 27 C -0.16 -0.25 9.99 22.37 0.22 -0.03 16 28 O -0.15 -0.53 7.54 -5.03 -0.04 -0.57 16 29 C -0.16 0.23 7.33 31.18 0.23 0.46 16 30 H 0.05 -0.21 8.14 -2.39 -0.02 -0.22 16 31 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.09 0.14 7.00 -2.39 -0.02 0.12 16 35 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.07 0.07 5.97 -2.39 -0.01 0.05 16 37 H 0.09 -0.26 6.15 -2.38 -0.01 -0.27 16 38 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.07 0.57 6.33 -2.39 -0.02 0.55 16 41 H 0.18 -0.72 8.06 -2.91 -0.02 -0.74 16 42 H 0.11 -0.96 7.65 -2.39 -0.02 -0.98 16 43 H 0.13 -1.33 7.68 -2.39 -0.02 -1.35 16 44 H 0.16 -1.68 6.30 -2.91 -0.02 -1.70 16 45 H 0.15 -1.38 4.90 -2.91 -0.01 -1.39 16 46 H 0.10 0.03 7.96 -2.39 -0.02 0.01 16 47 H 0.39 -3.32 8.70 -74.06 -0.64 -3.96 16 48 H -0.28 -0.23 7.11 99.48 0.71 0.48 16 49 H -0.30 -1.45 7.11 99.48 0.71 -0.74 16 50 H 0.13 0.02 8.06 -2.91 -0.02 0.00 16 51 H 0.13 0.15 8.06 -2.91 -0.02 0.13 16 52 H 0.10 -0.15 6.62 -2.39 -0.02 -0.16 16 53 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: 0.00 -21.31 429.93 1.61 -19.70 By element: Atomic # 1 Polarization: -11.39 SS G_CDS: 0.34 Total: -11.04 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.31 Total: 10.49 kcal Atomic # 7 Polarization: -2.27 SS G_CDS: -2.54 Total: -4.81 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -4.54 Total: -13.66 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.04 Total: -0.68 kcal Total: -21.31 1.61 -19.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10122440_4549632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.805 kcal (2) G-P(sol) polarization free energy of solvation -21.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds