Wall clock time and date at job start Tue Mar 9 2021 13:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99567 * 2 1 4 4 H 1.08992 * 112.85079 * 341.20157 * 3 2 1 5 5 C 1.53957 * 113.66118 * 112.44253 * 3 2 1 6 6 C 1.53785 * 87.01877 * 139.93202 * 5 3 2 7 7 H 1.08999 * 113.60680 * 89.23102 * 6 5 3 8 8 N 1.46498 * 113.61384 * 220.04582 * 6 5 3 9 9 C 1.46498 * 119.99982 * 39.14095 * 8 6 5 10 10 C 1.34776 * 120.00143 * 219.13582 * 8 6 5 11 11 O 1.21620 * 119.99823 * 5.16686 * 10 8 6 12 12 C 1.47379 * 120.00088 * 185.16382 * 10 8 6 13 13 C 1.36421 * 127.19022 * 141.47988 * 12 10 8 14 14 C 1.50705 * 125.80071 * 359.95485 * 13 12 10 15 15 O 1.42903 * 109.47083 * 90.00192 * 14 13 12 16 16 C 1.35892 * 116.99711 * 179.97438 * 15 14 13 17 17 C 1.38732 * 120.05593 * 180.02562 * 16 15 14 18 18 C 1.38137 * 119.94895 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.05381 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.94467 * 180.02562 * 19 18 17 21 21 O 1.42905 * 109.46781 * 299.99627 * 20 19 18 22 22 Si 1.86296 * 109.47151 * 179.97438 * 20 19 18 23 23 C 1.38264 * 120.11166 * 0.27332 * 19 18 17 24 24 C 1.38146 * 120.05337 * 359.45332 * 23 19 18 25 25 O 1.33650 * 108.39487 * 180.22368 * 13 12 10 26 26 C 1.34216 * 110.90694 * 359.58413 * 25 13 12 27 27 C 1.34176 * 109.12527 * 0.41792 * 26 25 13 28 28 C 1.53778 * 113.61310 * 209.99932 * 3 2 1 29 29 H 1.08998 * 109.47138 * 60.00032 * 1 2 3 30 30 H 1.09010 * 109.46529 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47258 * 299.99181 * 1 2 3 32 32 H 1.09004 * 113.61474 * 25.41133 * 5 3 2 33 33 H 1.09001 * 113.66975 * 254.46065 * 5 3 2 34 34 H 1.09001 * 109.47021 * 264.55858 * 9 8 6 35 35 H 1.09003 * 109.47451 * 24.55817 * 9 8 6 36 36 H 1.09003 * 109.47336 * 144.56102 * 9 8 6 37 37 H 1.09007 * 109.47320 * 330.00284 * 14 13 12 38 38 H 1.08996 * 109.46952 * 210.00454 * 14 13 12 39 39 H 1.08004 * 120.02344 * 359.95556 * 17 16 15 40 40 H 1.08000 * 119.97597 * 180.02562 * 18 17 16 41 41 H 1.09002 * 109.47304 * 59.99487 * 20 19 18 42 42 H 0.96707 * 113.99875 * 179.97438 * 21 20 19 43 43 H 1.48501 * 109.99903 * 298.67545 * 22 20 19 44 44 H 1.48500 * 110.00017 * 59.99709 * 22 20 19 45 45 H 1.08001 * 119.97261 * 179.72949 * 23 19 18 46 46 H 1.07997 * 120.02824 * 180.27329 * 24 23 19 47 47 H 1.07998 * 125.43070 * 180.19098 * 26 25 13 48 48 H 1.07999 * 127.02079 * 179.74996 * 27 26 25 49 49 H 1.08998 * 113.61336 * 105.48117 * 28 3 2 50 50 H 1.08995 * 113.69199 * 334.58179 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0789 -0.3237 5 6 2.7532 1.6511 1.3033 6 6 3.8226 2.3182 0.4223 7 1 3.6233 3.3695 0.2146 8 7 5.1934 2.0788 0.8804 9 6 5.5712 0.7642 1.4051 10 6 6.1069 3.0678 0.8191 11 8 5.7719 4.1843 0.4724 12 6 7.5118 2.7962 1.1722 13 6 8.6262 3.2944 0.5631 14 6 8.6415 4.2369 -0.6127 15 8 8.6369 5.5861 -0.1417 16 6 8.6498 6.5676 -1.0815 17 6 8.6468 7.9000 -0.6948 18 6 8.6604 8.8959 -1.6520 19 6 8.6777 8.5657 -2.9946 20 6 8.6932 9.6542 -4.0368 21 8 7.5256 10.4659 -3.8951 22 14 8.7152 8.8880 -5.7347 23 6 8.6756 7.2387 -3.3827 24 6 8.6676 6.2390 -2.4292 25 8 9.7022 2.7998 1.1828 26 6 9.3440 1.9929 2.1937 27 6 8.0050 1.9324 2.2547 28 6 3.3755 1.3720 -0.7045 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.1161 0.7769 1.8440 33 1 2.2145 2.3513 1.9418 34 1 5.4933 0.7709 2.4923 35 1 4.9037 0.0048 0.9978 36 1 6.5976 0.5387 1.1158 37 1 7.7588 4.0641 -1.2285 38 1 9.5386 4.0624 -1.2066 39 1 8.6334 8.1583 0.3538 40 1 8.6585 9.9332 -1.3515 41 1 9.5824 10.2707 -3.9051 42 1 7.4692 11.1890 -4.5348 43 1 9.9409 8.0672 -5.9056 44 1 7.5082 8.0446 -5.9270 45 1 8.6846 6.9834 -4.4321 46 1 8.6704 5.2026 -2.7328 47 1 10.0251 1.4723 2.8506 48 1 7.4110 1.3649 2.9557 49 1 3.3383 1.8474 -1.6847 50 1 3.9098 0.4221 -0.7147 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10122440_4549634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:13 Heat of formation + Delta-G solvation = -50.911092 kcal Electronic energy + Delta-G solvation = -33963.631985 eV Core-core repulsion = 29312.969267 eV Total energy + Delta-G solvation = -4650.662718 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.80235 -41.48881 -41.42092 -39.83962 -39.24665 -37.55432 -37.26467 -35.47904 -33.85544 -33.01433 -32.16157 -31.58983 -28.35894 -28.29080 -27.61511 -26.81486 -26.27806 -25.80220 -24.09596 -23.62028 -22.47874 -22.19785 -20.67496 -20.11610 -19.67124 -18.92780 -18.43837 -18.32385 -17.79134 -17.25490 -17.20394 -17.02247 -16.87766 -16.80406 -16.53384 -16.26345 -15.90037 -15.85756 -15.60381 -15.32957 -15.10077 -14.72952 -14.54419 -14.44171 -14.18330 -14.02227 -14.00257 -13.87621 -13.60964 -13.51762 -13.26691 -13.17531 -13.08761 -12.76175 -12.56720 -12.30955 -12.24408 -12.11759 -12.00847 -11.89672 -11.87854 -11.29156 -10.88484 -10.53541 -10.31726 -10.22574 -9.98276 -9.74379 -9.36425 -4.96105 -0.04964 0.07712 0.13161 0.99553 1.30044 1.43417 1.61999 1.62599 1.92156 1.96229 2.28519 2.46656 2.85355 3.22870 3.27300 3.38550 3.42547 3.46161 3.52356 3.65706 3.67899 3.71912 3.79675 3.82252 3.85271 3.91607 4.09812 4.13522 4.22576 4.28228 4.38356 4.39001 4.42129 4.48888 4.51741 4.54457 4.55462 4.62258 4.62977 4.73408 4.76353 4.77186 4.83908 4.86433 4.89058 4.99214 5.01485 5.05065 5.21249 5.31607 5.40430 5.52705 5.83962 6.10936 6.14335 6.20964 6.89414 6.92637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.394 6.394 3 C 0.066 3.934 4 H 0.102 0.898 5 C -0.155 4.155 6 C 0.116 3.884 7 H 0.105 0.895 8 N -0.590 5.590 9 C 0.066 3.934 10 C 0.579 3.421 11 O -0.570 6.570 12 C -0.214 4.214 13 C 0.029 3.971 14 C 0.140 3.860 15 O -0.316 6.316 16 C 0.125 3.875 17 C -0.157 4.157 18 C -0.052 4.052 19 C -0.129 4.129 20 C -0.074 4.074 21 O -0.565 6.565 22 Si 0.775 3.225 23 C -0.098 4.098 24 C -0.208 4.208 25 O -0.175 6.175 26 C -0.005 4.005 27 C -0.199 4.199 28 C -0.144 4.144 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.097 0.903 42 H 0.403 0.597 43 H -0.286 1.286 44 H -0.300 1.300 45 H 0.124 0.876 46 H 0.146 0.854 47 H 0.256 0.744 48 H 0.188 0.812 49 H 0.077 0.923 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 -2.914 -0.760 3.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.312 6.312 3 C 0.008 3.992 4 H 0.120 0.880 5 C -0.194 4.194 6 C 0.012 3.988 7 H 0.123 0.877 8 N -0.321 5.321 9 C -0.075 4.075 10 C 0.369 3.631 11 O -0.451 6.451 12 C -0.218 4.218 13 C -0.023 4.023 14 C 0.066 3.934 15 O -0.230 6.230 16 C 0.080 3.920 17 C -0.176 4.176 18 C -0.070 4.070 19 C -0.129 4.129 20 C -0.184 4.184 21 O -0.375 6.375 22 Si 0.681 3.319 23 C -0.115 4.115 24 C -0.226 4.226 25 O -0.070 6.070 26 C -0.070 4.070 27 C -0.217 4.217 28 C -0.183 4.183 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.159 0.841 40 H 0.169 0.831 41 H 0.115 0.885 42 H 0.255 0.745 43 H -0.213 1.213 44 H -0.228 1.228 45 H 0.141 0.859 46 H 0.163 0.837 47 H 0.271 0.729 48 H 0.206 0.794 49 H 0.096 0.904 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.976 -3.594 -0.783 3.805 hybrid contribution -0.442 -0.198 0.596 0.768 sum 0.534 -3.792 -0.187 3.833 Atomic orbital electron populations 1.22970 0.79709 1.03804 1.00804 1.87902 1.21255 1.27431 1.94647 1.23505 0.93814 0.85735 0.96182 0.88036 1.23945 0.96280 1.01427 0.97708 1.22332 0.80113 1.00109 0.96239 0.87680 1.47639 1.09580 1.12757 1.62103 1.22247 1.02678 0.82565 1.00004 1.17666 0.84770 0.83943 0.76762 1.90832 1.81238 1.23495 1.49512 1.21309 0.92735 1.05620 1.02179 1.21792 0.84237 0.98517 0.97754 1.20954 1.04333 0.77498 0.90642 1.86107 1.88645 1.14290 1.33983 1.19140 0.96284 0.88776 0.87778 1.20739 1.05864 0.89449 1.01543 1.21032 0.94950 0.99899 0.91144 1.19685 1.04501 0.93483 0.95228 1.24769 0.91624 0.95447 1.06545 1.86452 1.42000 1.47245 1.61818 0.94489 0.76115 0.82672 0.78605 1.20824 0.99297 0.92760 0.98657 1.21307 1.08594 1.01085 0.91629 1.83781 1.34365 1.50392 1.38511 1.24958 0.96991 0.94930 0.90165 1.23295 0.95038 1.02939 1.00455 1.23674 0.95678 1.00463 0.98447 0.93211 0.88724 0.93167 0.87856 0.90103 0.90520 0.89395 0.89608 0.89029 0.87805 0.84131 0.83079 0.88525 0.74542 1.21347 1.22847 0.85879 0.83670 0.72854 0.79438 0.90389 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.39 -1.06 10.72 -148.98 -1.60 -2.66 16 3 C 0.07 0.01 4.31 31.18 0.13 0.15 16 4 H 0.10 -0.19 7.87 -2.39 -0.02 -0.21 16 5 C -0.16 0.04 7.34 31.18 0.23 0.27 16 6 C 0.12 0.37 4.22 45.52 0.19 0.56 16 7 H 0.11 0.76 7.20 -2.39 -0.02 0.75 16 8 N -0.59 -2.17 3.08 -823.55 -2.54 -4.71 16 9 C 0.07 -0.24 7.80 127.77 1.00 0.76 16 10 C 0.58 5.80 7.32 86.65 0.63 6.44 16 11 O -0.57 -10.43 15.80 -4.09 -0.06 -10.49 16 12 C -0.21 -1.38 5.44 -18.99 -0.10 -1.48 16 13 C 0.03 0.21 7.00 25.26 0.18 0.39 16 14 C 0.14 1.03 4.72 71.24 0.34 1.37 16 15 O -0.32 -4.06 10.12 -92.34 -0.93 -5.00 16 16 C 0.13 1.47 6.69 22.51 0.15 1.62 16 17 C -0.16 -1.61 9.99 22.36 0.22 -1.39 16 18 C -0.05 -0.42 9.60 22.25 0.21 -0.21 16 19 C -0.13 -1.04 5.42 -19.85 -0.11 -1.15 16 20 C -0.07 -0.12 2.81 71.24 0.20 0.08 16 21 O -0.57 -1.01 12.74 -148.98 -1.90 -2.91 16 22 Si 0.77 -0.21 29.78 68.60 2.04 1.83 16 23 C -0.10 -0.90 8.66 22.25 0.19 -0.70 16 24 C -0.21 -1.92 9.04 22.37 0.20 -1.72 16 25 O -0.17 -0.69 10.52 4.48 0.05 -0.64 16 26 C 0.00 0.01 12.03 66.89 0.80 0.82 16 27 C -0.20 0.27 8.83 23.65 0.21 0.48 16 28 C -0.14 -0.14 7.42 31.12 0.23 0.09 16 29 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.09 -0.35 8.14 -2.38 -0.02 -0.37 16 31 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.10 -0.14 6.69 -2.38 -0.02 -0.15 16 33 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.08 -0.50 7.42 -2.39 -0.02 -0.52 16 35 H 0.09 -0.45 6.13 -2.39 -0.01 -0.46 16 36 H 0.09 -0.40 5.92 -2.39 -0.01 -0.41 16 37 H 0.09 0.71 7.17 -2.38 -0.02 0.69 16 38 H 0.10 0.24 7.66 -2.39 -0.02 0.22 16 39 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 41 H 0.10 -0.30 7.96 -2.39 -0.02 -0.31 16 42 H 0.40 -3.72 8.74 -74.05 -0.65 -4.36 16 43 H -0.29 -1.31 7.11 99.48 0.71 -0.61 16 44 H -0.30 -2.34 7.11 99.48 0.71 -1.63 16 45 H 0.12 0.90 4.87 -2.91 -0.01 0.89 16 46 H 0.15 0.68 6.30 -2.91 -0.02 0.66 16 47 H 0.26 -3.24 8.06 -2.91 -0.02 -3.26 16 48 H 0.19 -1.34 6.65 -2.91 -0.02 -1.36 16 49 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 50 H 0.10 0.06 6.90 -2.39 -0.02 0.04 16 Total: 0.00 -27.70 408.85 1.58 -26.12 By element: Atomic # 1 Polarization: -9.47 SS G_CDS: 0.38 Total: -9.09 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 6.15 Total: 7.55 kcal Atomic # 7 Polarization: -2.17 SS G_CDS: -2.54 Total: -4.71 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -4.45 Total: -21.70 kcal Atomic # 14 Polarization: -0.21 SS G_CDS: 2.04 Total: 1.83 kcal Total: -27.70 1.58 -26.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10122440_4549634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.792 kcal (2) G-P(sol) polarization free energy of solvation -27.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds