Wall clock time and date at job start Tue Mar 9 2021 13:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35993 * 116.99687 * 2 1 4 4 C 1.39153 * 120.07026 * 180.02562 * 3 2 1 5 5 O 1.35989 * 120.07556 * 359.97438 * 4 3 2 6 6 C 1.42900 * 117.00413 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47362 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00202 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99967 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00104 * 359.97438 * 9 7 6 11 11 C 1.46502 * 120.00134 * 180.02562 * 9 7 6 12 12 H 1.09010 * 112.84725 * 348.80255 * 11 9 7 13 13 C 1.53773 * 113.61471 * 119.99936 * 11 9 7 14 14 C 1.53779 * 87.08126 * 139.98476 * 13 11 9 15 15 H 1.09006 * 113.61620 * 89.11633 * 14 13 11 16 16 O 1.42908 * 113.61227 * 220.01960 * 14 13 11 17 17 C 1.42898 * 113.99778 * 210.00085 * 16 14 13 18 18 C 1.53775 * 113.61547 * 217.49885 * 11 9 7 19 19 C 1.38563 * 119.85224 * 179.97438 * 4 3 2 20 20 C 1.38245 * 120.00301 * 359.72280 * 19 4 3 21 21 C 1.38261 * 120.14178 * 0.54753 * 20 19 4 22 22 C 1.50699 * 119.92538 * 179.72723 * 21 20 19 23 23 O 1.42892 * 109.47249 * 119.73101 * 22 21 20 24 24 Si 1.86298 * 109.47032 * 359.72486 * 22 21 20 25 25 C 1.38242 * 120.14400 * 359.45608 * 21 20 19 26 26 H 1.08995 * 109.47278 * 300.00059 * 1 2 3 27 27 H 1.09002 * 109.46994 * 60.00277 * 1 2 3 28 28 H 1.09004 * 109.46734 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47341 * 300.00830 * 6 5 4 30 30 H 1.09005 * 109.46619 * 60.00372 * 6 5 4 31 31 H 1.09006 * 109.46914 * 90.00271 * 10 9 7 32 32 H 1.09001 * 109.47500 * 209.99976 * 10 9 7 33 33 H 1.08996 * 109.47187 * 330.00610 * 10 9 7 34 34 H 1.09006 * 113.61615 * 254.53358 * 13 11 9 35 35 H 1.08994 * 113.61940 * 25.43084 * 13 11 9 36 36 H 1.09002 * 109.47707 * 59.99735 * 17 16 14 37 37 H 1.08996 * 109.47213 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.46941 * 299.99974 * 17 16 14 39 39 H 1.08996 * 113.61408 * 334.56713 * 18 11 9 40 40 H 1.09004 * 113.61596 * 105.46835 * 18 11 9 41 41 H 1.08008 * 119.99970 * 179.97438 * 19 4 3 42 42 H 1.07998 * 119.93124 * 180.29656 * 20 19 4 43 43 H 1.09004 * 109.46453 * 239.73169 * 22 21 20 44 44 H 0.96703 * 114.00176 * 299.99748 * 23 22 21 45 45 H 1.48506 * 109.99834 * 58.68765 * 24 22 21 46 46 H 1.48502 * 110.00011 * 180.02562 * 24 22 21 47 47 H 1.08001 * 119.99775 * 180.25292 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1795 0.1478 -0.0005 6 6 5.6003 0.3007 -0.0017 7 6 6.2519 -1.0581 -0.0021 8 8 5.5670 -2.0591 -0.0020 9 7 7.5957 -1.1610 -0.0027 10 6 8.4230 0.0480 -0.0034 11 6 8.2292 -2.4820 -0.0037 12 1 7.5237 -3.2899 0.1912 13 6 9.1303 -2.7321 -1.2244 14 6 10.1095 -3.4237 -0.2612 15 1 9.9191 -4.4897 -0.1360 16 8 11.4818 -3.1319 -0.5328 17 6 12.3812 -4.1838 -0.1769 18 6 9.5038 -2.5546 0.8535 19 6 4.0602 2.5234 -0.0011 20 6 3.3028 3.6799 -0.0069 21 6 1.9222 3.6058 -0.0007 22 6 1.1015 4.8696 -0.0008 23 8 0.2767 4.9018 -1.1673 24 14 2.2364 6.3470 -0.0016 25 6 1.2931 2.3748 -0.0001 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 5.9059 0.8502 -0.8920 30 1 5.9071 0.8509 0.8879 31 1 8.6287 0.3481 1.0242 32 1 9.3625 -0.1548 -0.5176 33 1 7.8935 0.8503 -0.5171 34 1 8.6918 -3.4065 -1.9600 35 1 9.5266 -1.8193 -1.6690 36 1 12.1270 -5.0841 -0.7363 37 1 13.4021 -3.8845 -0.4137 38 1 12.3004 -4.3849 0.8914 39 1 10.0022 -1.5932 0.9771 40 1 9.3668 -3.0857 1.7955 41 1 5.1386 2.5841 -0.0011 42 1 3.7906 4.6434 -0.0121 43 1 0.4730 4.8947 0.8894 44 1 0.7702 4.8821 -1.9986 45 1 3.1206 6.3077 -1.1941 46 1 1.4391 7.5999 -0.0011 47 1 0.2145 2.3196 0.0006 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10122440_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:42 Heat of formation + Delta-G solvation = -106.049906 kcal Electronic energy + Delta-G solvation = -29347.873295 eV Core-core repulsion = 25079.498001 eV Total energy + Delta-G solvation = -4268.375295 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87210 -41.39210 -40.07707 -39.10914 -38.87373 -37.46596 -36.97069 -35.25225 -32.03451 -31.45224 -29.76425 -28.45880 -28.35885 -27.71445 -26.80144 -26.26051 -24.99096 -23.40935 -22.51298 -21.15148 -20.18309 -19.84336 -18.63352 -18.29763 -18.10943 -17.76778 -17.63308 -17.10922 -16.94784 -16.72078 -16.29539 -16.15868 -16.14065 -15.84578 -15.76639 -15.63223 -15.17360 -14.97824 -14.53109 -14.25990 -14.25184 -13.80228 -13.67698 -13.53336 -13.44314 -13.41893 -13.26225 -12.80031 -12.60679 -12.54245 -12.33045 -12.16742 -12.14296 -12.00182 -11.95596 -11.88690 -11.65490 -10.79494 -10.63764 -10.53822 -9.77508 -9.76485 -8.84744 -4.98437 0.18105 0.30429 1.26031 1.36364 1.47477 1.57496 1.94162 2.32329 2.35018 2.57317 2.83181 3.23574 3.33207 3.43006 3.44688 3.62048 3.69699 3.71858 3.77297 3.80439 3.85969 3.94155 3.97495 4.12914 4.22613 4.25943 4.29818 4.30164 4.35051 4.39532 4.40770 4.50452 4.53133 4.57867 4.62409 4.64405 4.65854 4.72801 4.84249 4.87865 5.00620 5.01244 5.10790 5.37084 5.37643 5.56500 5.97354 6.15237 6.21100 6.37828 6.55360 7.05268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.301 6.301 3 C 0.107 3.893 4 C 0.105 3.895 5 O -0.277 6.277 6 C 0.041 3.959 7 C 0.518 3.482 8 O -0.509 6.509 9 N -0.602 5.602 10 C 0.068 3.932 11 C 0.125 3.875 12 H 0.125 0.875 13 C -0.150 4.150 14 C 0.065 3.935 15 H 0.093 0.907 16 O -0.375 6.375 17 C 0.029 3.971 18 C -0.165 4.165 19 C -0.170 4.170 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.073 4.073 23 O -0.530 6.530 24 Si 0.686 3.314 25 C -0.146 4.146 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.118 0.882 44 H 0.376 0.624 45 H -0.259 1.259 46 H -0.257 1.257 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 2.315 1.861 5.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.061 3.939 4 C 0.059 3.941 5 O -0.190 6.190 6 C -0.038 4.038 7 C 0.305 3.695 8 O -0.382 6.382 9 N -0.337 5.337 10 C -0.075 4.075 11 C 0.021 3.979 12 H 0.143 0.857 13 C -0.188 4.188 14 C 0.006 3.994 15 H 0.111 0.889 16 O -0.294 6.294 17 C -0.068 4.068 18 C -0.204 4.204 19 C -0.189 4.189 20 C -0.130 4.130 21 C -0.115 4.115 22 C -0.182 4.182 23 O -0.337 6.337 24 Si 0.587 3.413 25 C -0.165 4.165 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.224 0.776 45 H -0.184 1.184 46 H -0.183 1.183 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.317 2.286 1.806 5.208 hybrid contribution -0.302 -0.313 -0.957 1.051 sum 4.015 1.972 0.849 4.553 Atomic orbital electron populations 1.23131 0.78127 1.04396 1.01362 1.86252 1.21324 1.25336 1.88540 1.18281 0.89010 0.85570 1.01055 1.18286 0.88317 0.85781 1.01697 1.86274 1.16134 1.27787 1.88797 1.22540 0.81091 0.96343 1.03813 1.20042 0.82059 0.90586 0.76849 1.90783 1.62183 1.38084 1.47193 1.47625 1.04927 1.07173 1.74003 1.21927 0.96720 0.86225 1.02623 1.22337 0.93191 0.85616 0.96726 0.85708 1.23725 0.95444 1.02105 0.97548 1.23446 0.81536 0.98499 0.95929 0.88894 1.87937 1.15687 1.41221 1.84511 1.22833 0.94093 0.90561 0.99306 1.23978 0.95611 1.02145 0.98641 1.20984 1.00436 0.90678 1.06757 1.20687 0.92843 0.97873 1.01645 1.19984 0.93704 0.95088 1.02676 1.25010 1.00219 1.01812 0.91189 1.86592 1.35611 1.95714 1.15754 0.94996 0.80387 0.76373 0.89524 1.20933 1.00399 0.90391 1.04784 0.92506 0.92541 0.87880 0.88852 0.88699 0.91728 0.89914 0.90788 0.90097 0.88548 0.93783 0.89448 0.93840 0.88362 0.90329 0.84352 0.84999 0.86374 0.77602 1.18429 1.18254 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 101.05 0.99 1.00 16 2 O -0.30 -1.36 10.28 -34.22 -0.35 -1.71 16 3 C 0.11 0.37 6.70 -39.12 -0.26 0.11 16 4 C 0.11 0.30 6.70 -39.12 -0.26 0.04 16 5 O -0.28 -1.19 9.45 -47.33 -0.45 -1.64 16 6 C 0.04 0.00 3.77 36.00 0.14 0.14 16 7 C 0.52 1.34 7.75 -10.99 -0.09 1.25 16 8 O -0.51 -3.76 15.98 -14.36 -0.23 -3.99 16 9 N -0.60 0.13 3.08 -173.00 -0.53 -0.40 16 10 C 0.07 -0.25 8.85 59.85 0.53 0.28 16 11 C 0.12 0.00 4.21 -67.12 -0.28 -0.29 16 12 H 0.13 0.18 7.23 -51.92 -0.38 -0.19 16 13 C -0.15 0.08 7.45 -25.92 -0.19 -0.11 16 14 C 0.06 -0.04 4.31 -25.92 -0.11 -0.15 16 15 H 0.09 -0.16 7.87 -51.93 -0.41 -0.57 16 16 O -0.38 -0.34 10.71 -35.23 -0.38 -0.71 16 17 C 0.03 -0.04 10.85 101.05 1.10 1.06 16 18 C -0.17 0.20 7.34 -25.92 -0.19 0.01 16 19 C -0.17 0.03 9.04 -39.46 -0.36 -0.32 16 20 C -0.11 0.07 8.66 -39.57 -0.34 -0.28 16 21 C -0.11 -0.04 5.39 -104.61 -0.56 -0.60 16 22 C -0.07 0.03 2.82 36.01 0.10 0.13 16 23 O -0.53 -0.57 12.77 -35.23 -0.45 -1.02 16 24 Si 0.69 -0.92 29.78 -169.99 -5.06 -5.98 16 25 C -0.15 -0.23 8.60 -39.46 -0.34 -0.57 16 26 H 0.06 -0.04 7.66 -51.93 -0.40 -0.44 16 27 H 0.06 -0.03 7.66 -51.93 -0.40 -0.43 16 28 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.09 -0.24 6.92 -51.93 -0.36 -0.60 16 30 H 0.10 -0.26 7.63 -51.93 -0.40 -0.66 16 31 H 0.06 -0.30 8.14 -51.93 -0.42 -0.72 16 32 H 0.08 -0.32 6.33 -51.93 -0.33 -0.65 16 33 H 0.07 -0.41 6.44 -51.93 -0.33 -0.74 16 34 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 35 H 0.10 -0.06 6.92 -51.93 -0.36 -0.42 16 36 H 0.04 -0.08 8.14 -51.93 -0.42 -0.51 16 37 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 38 H 0.04 -0.08 8.14 -51.93 -0.42 -0.51 16 39 H 0.10 -0.15 6.72 -51.93 -0.35 -0.50 16 40 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 41 H 0.14 -0.46 6.30 -52.48 -0.33 -0.79 16 42 H 0.13 -0.37 4.87 -52.49 -0.26 -0.62 16 43 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 44 H 0.38 -0.61 8.70 45.56 0.40 -0.22 16 45 H -0.26 -0.12 7.11 56.52 0.40 0.28 16 46 H -0.26 -0.54 7.11 56.52 0.40 -0.13 16 47 H 0.14 0.08 6.30 -52.49 -0.33 -0.25 16 LS Contribution 381.03 15.07 5.74 5.74 Total: 0.00 -10.68 381.03 -8.64 -19.32 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: -6.80 Total: -11.29 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -0.13 Total: 1.69 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -0.53 Total: -0.40 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -1.86 Total: -9.07 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: -5.06 Total: -5.98 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -10.68 -8.64 -19.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10122440_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.730 kcal (2) G-P(sol) polarization free energy of solvation -10.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds