Wall clock time and date at job start Tue Mar 9 2021 13:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35993 * 116.99687 * 2 1 4 4 C 1.39153 * 120.07026 * 180.02562 * 3 2 1 5 5 O 1.35989 * 120.07556 * 359.97438 * 4 3 2 6 6 C 1.42900 * 117.00413 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47362 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00202 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99967 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00104 * 359.97438 * 9 7 6 11 11 C 1.46502 * 120.00134 * 180.02562 * 9 7 6 12 12 H 1.09010 * 112.84725 * 348.80255 * 11 9 7 13 13 C 1.53773 * 113.61471 * 119.99936 * 11 9 7 14 14 C 1.53779 * 87.08126 * 139.98476 * 13 11 9 15 15 H 1.09006 * 113.61620 * 89.11633 * 14 13 11 16 16 O 1.42908 * 113.61227 * 220.01960 * 14 13 11 17 17 C 1.42898 * 113.99778 * 210.00085 * 16 14 13 18 18 C 1.53775 * 113.61547 * 217.49885 * 11 9 7 19 19 C 1.38563 * 119.85224 * 179.97438 * 4 3 2 20 20 C 1.38245 * 120.00301 * 359.72280 * 19 4 3 21 21 C 1.38261 * 120.14178 * 0.54753 * 20 19 4 22 22 C 1.50699 * 119.92538 * 179.72723 * 21 20 19 23 23 O 1.42892 * 109.47249 * 119.73101 * 22 21 20 24 24 Si 1.86298 * 109.47032 * 359.72486 * 22 21 20 25 25 C 1.38242 * 120.14400 * 359.45608 * 21 20 19 26 26 H 1.08995 * 109.47278 * 300.00059 * 1 2 3 27 27 H 1.09002 * 109.46994 * 60.00277 * 1 2 3 28 28 H 1.09004 * 109.46734 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47341 * 300.00830 * 6 5 4 30 30 H 1.09005 * 109.46619 * 60.00372 * 6 5 4 31 31 H 1.09006 * 109.46914 * 90.00271 * 10 9 7 32 32 H 1.09001 * 109.47500 * 209.99976 * 10 9 7 33 33 H 1.08996 * 109.47187 * 330.00610 * 10 9 7 34 34 H 1.09006 * 113.61615 * 254.53358 * 13 11 9 35 35 H 1.08994 * 113.61940 * 25.43084 * 13 11 9 36 36 H 1.09002 * 109.47707 * 59.99735 * 17 16 14 37 37 H 1.08996 * 109.47213 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.46941 * 299.99974 * 17 16 14 39 39 H 1.08996 * 113.61408 * 334.56713 * 18 11 9 40 40 H 1.09004 * 113.61596 * 105.46835 * 18 11 9 41 41 H 1.08008 * 119.99970 * 179.97438 * 19 4 3 42 42 H 1.07998 * 119.93124 * 180.29656 * 20 19 4 43 43 H 1.09004 * 109.46453 * 239.73169 * 22 21 20 44 44 H 0.96703 * 114.00176 * 299.99748 * 23 22 21 45 45 H 1.48506 * 109.99834 * 58.68765 * 24 22 21 46 46 H 1.48502 * 110.00011 * 180.02562 * 24 22 21 47 47 H 1.08001 * 119.99775 * 180.25292 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1795 0.1478 -0.0005 6 6 5.6003 0.3007 -0.0017 7 6 6.2519 -1.0581 -0.0021 8 8 5.5670 -2.0591 -0.0020 9 7 7.5957 -1.1610 -0.0027 10 6 8.4230 0.0480 -0.0034 11 6 8.2292 -2.4820 -0.0037 12 1 7.5237 -3.2899 0.1912 13 6 9.1303 -2.7321 -1.2244 14 6 10.1095 -3.4237 -0.2612 15 1 9.9191 -4.4897 -0.1360 16 8 11.4818 -3.1319 -0.5328 17 6 12.3812 -4.1838 -0.1769 18 6 9.5038 -2.5546 0.8535 19 6 4.0602 2.5234 -0.0011 20 6 3.3028 3.6799 -0.0069 21 6 1.9222 3.6058 -0.0007 22 6 1.1015 4.8696 -0.0008 23 8 0.2767 4.9018 -1.1673 24 14 2.2364 6.3470 -0.0016 25 6 1.2931 2.3748 -0.0001 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 5.9059 0.8502 -0.8920 30 1 5.9071 0.8509 0.8879 31 1 8.6287 0.3481 1.0242 32 1 9.3625 -0.1548 -0.5176 33 1 7.8935 0.8503 -0.5171 34 1 8.6918 -3.4065 -1.9600 35 1 9.5266 -1.8193 -1.6690 36 1 12.1270 -5.0841 -0.7363 37 1 13.4021 -3.8845 -0.4137 38 1 12.3004 -4.3849 0.8914 39 1 10.0022 -1.5932 0.9771 40 1 9.3668 -3.0857 1.7955 41 1 5.1386 2.5841 -0.0011 42 1 3.7906 4.6434 -0.0121 43 1 0.4730 4.8947 0.8894 44 1 0.7702 4.8821 -1.9986 45 1 3.1206 6.3077 -1.1941 46 1 1.4391 7.5999 -0.0011 47 1 0.2145 2.3196 0.0006 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10122440_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:41 Heat of formation + Delta-G solvation = -107.879218 kcal Electronic energy + Delta-G solvation = -29347.952620 eV Core-core repulsion = 25079.498001 eV Total energy + Delta-G solvation = -4268.454620 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91836 -41.41701 -40.12865 -39.21810 -38.91342 -37.49255 -37.01183 -35.25358 -32.05155 -31.46334 -29.76788 -28.48057 -28.20445 -27.60169 -26.74301 -26.25520 -24.96789 -23.41910 -22.53967 -21.15069 -20.14583 -19.88379 -18.67736 -18.33300 -18.12408 -17.79425 -17.65153 -17.15557 -16.91154 -16.79097 -16.29886 -16.14389 -16.12622 -15.83142 -15.78426 -15.62574 -15.15258 -14.92942 -14.52514 -14.29138 -14.19866 -13.78964 -13.63011 -13.52604 -13.42669 -13.25368 -13.12270 -12.71872 -12.61106 -12.58209 -12.28336 -12.17890 -12.16040 -12.01028 -11.92318 -11.81398 -11.64258 -10.94912 -10.62240 -10.48876 -9.78563 -9.75792 -8.92443 -4.87921 0.16364 0.27756 1.34014 1.36852 1.38132 1.64758 2.00455 2.30594 2.38047 2.55462 2.90770 3.27585 3.40136 3.47201 3.48576 3.65282 3.77156 3.82019 3.83898 3.86864 4.00107 4.04574 4.13333 4.23487 4.27649 4.29354 4.30019 4.35851 4.50074 4.54892 4.57261 4.63235 4.65002 4.65518 4.68633 4.69321 4.82434 4.89527 4.93306 4.94665 5.00644 5.06445 5.12458 5.36565 5.42657 5.59719 5.95506 6.19639 6.25247 6.49202 6.51211 6.97731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.084 3.916 5 O -0.315 6.315 6 C 0.039 3.961 7 C 0.510 3.490 8 O -0.574 6.574 9 N -0.595 5.595 10 C 0.058 3.942 11 C 0.117 3.883 12 H 0.102 0.898 13 C -0.145 4.145 14 C 0.063 3.937 15 H 0.099 0.901 16 O -0.393 6.393 17 C 0.023 3.977 18 C -0.153 4.153 19 C -0.159 4.159 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.085 4.085 23 O -0.551 6.551 24 Si 0.777 3.223 25 C -0.152 4.152 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.175 0.825 42 H 0.160 0.840 43 H 0.123 0.877 44 H 0.386 0.614 45 H -0.275 1.275 46 H -0.307 1.307 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.686 4.332 2.150 8.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.031 3.969 4 C 0.039 3.961 5 O -0.229 6.229 6 C -0.039 4.039 7 C 0.298 3.702 8 O -0.452 6.452 9 N -0.328 5.328 10 C -0.083 4.083 11 C 0.013 3.987 12 H 0.120 0.880 13 C -0.184 4.184 14 C 0.005 3.995 15 H 0.117 0.883 16 O -0.312 6.312 17 C -0.073 4.073 18 C -0.191 4.191 19 C -0.178 4.178 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.193 4.193 23 O -0.359 6.359 24 Si 0.682 3.318 25 C -0.170 4.170 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.193 0.807 42 H 0.177 0.823 43 H 0.140 0.860 44 H 0.235 0.765 45 H -0.201 1.201 46 H -0.236 1.236 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.194 4.305 2.098 7.829 hybrid contribution -0.864 -0.903 -1.066 1.643 sum 5.330 3.402 1.032 6.406 Atomic orbital electron populations 1.23281 0.76823 1.05179 1.02096 1.86192 1.22989 1.26660 1.89096 1.18672 0.89884 0.85634 1.02708 1.18609 0.88210 0.86530 1.02786 1.86220 1.18166 1.29205 1.89289 1.22807 0.79295 0.95068 1.06706 1.20649 0.82648 0.91007 0.75879 1.90749 1.63735 1.40214 1.50540 1.47737 1.04498 1.08203 1.72343 1.22258 0.96642 0.85260 1.04180 1.22267 0.93131 0.85591 0.97691 0.88041 1.23686 0.95267 1.02209 0.97237 1.23500 0.81092 0.98981 0.95967 0.88286 1.87899 1.16290 1.42217 1.84814 1.22961 0.94106 0.90351 0.99858 1.23899 0.94449 1.02455 0.98337 1.21372 1.02244 0.89303 1.04848 1.21013 0.92380 0.98986 1.00242 1.20138 0.94468 0.94695 1.02353 1.25323 1.00692 1.02307 0.91002 1.86564 1.36796 1.95820 1.16697 0.94007 0.78054 0.72252 0.87513 1.21005 1.00505 0.90519 1.05006 0.91578 0.91944 0.87131 0.85736 0.85423 0.90099 0.89471 0.88276 0.90751 0.88088 0.93331 0.88761 0.93156 0.87499 0.90124 0.80745 0.82313 0.85955 0.76464 1.20124 1.23591 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.34 -3.88 10.28 -79.61 -0.82 -4.70 16 3 C 0.08 0.64 6.70 22.57 0.15 0.79 16 4 C 0.08 0.50 6.70 22.57 0.15 0.65 16 5 O -0.32 -3.00 9.45 -67.01 -0.63 -3.64 16 6 C 0.04 -0.03 3.77 71.23 0.27 0.24 16 7 C 0.51 3.05 7.75 87.66 0.68 3.73 16 8 O -0.57 -10.17 15.98 15.98 0.26 -9.92 16 9 N -0.59 0.34 3.08 -819.65 -2.53 -2.19 16 10 C 0.06 -0.55 8.85 127.77 1.13 0.58 16 11 C 0.12 0.11 4.21 45.51 0.19 0.30 16 12 H 0.10 0.58 7.23 -2.38 -0.02 0.56 16 13 C -0.15 0.08 7.45 31.12 0.23 0.31 16 14 C 0.06 -0.07 4.31 31.12 0.13 0.06 16 15 H 0.10 -0.28 7.87 -2.38 -0.02 -0.30 16 16 O -0.39 -0.57 10.71 -148.98 -1.60 -2.17 16 17 C 0.02 -0.07 10.85 113.37 1.23 1.16 16 18 C -0.15 0.39 7.34 31.12 0.23 0.61 16 19 C -0.16 0.39 9.04 22.35 0.20 0.59 16 20 C -0.11 0.36 8.66 22.28 0.19 0.56 16 21 C -0.12 0.00 5.39 -19.86 -0.11 -0.11 16 22 C -0.09 0.12 2.82 71.24 0.20 0.32 16 23 O -0.55 -1.14 12.77 -148.98 -1.90 -3.04 16 24 Si 0.78 -3.21 29.78 68.60 2.04 -1.16 16 25 C -0.15 -0.59 8.60 22.35 0.19 -0.40 16 26 H 0.07 0.01 7.66 -2.39 -0.02 -0.01 16 27 H 0.06 0.05 7.66 -2.39 -0.02 0.04 16 28 H 0.11 0.03 8.14 -2.38 -0.02 0.01 16 29 H 0.13 -0.96 6.92 -2.39 -0.02 -0.98 16 30 H 0.13 -1.02 7.63 -2.38 -0.02 -1.04 16 31 H 0.08 -0.98 8.14 -2.38 -0.02 -0.99 16 32 H 0.09 -0.86 6.33 -2.39 -0.02 -0.87 16 33 H 0.10 -1.43 6.44 -2.39 -0.02 -1.44 16 34 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 35 H 0.10 -0.16 6.92 -2.39 -0.02 -0.17 16 36 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.05 -0.22 8.14 -2.38 -0.02 -0.24 16 39 H 0.11 -0.45 6.72 -2.39 -0.02 -0.46 16 40 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.18 -1.86 6.30 -2.91 -0.02 -1.88 16 42 H 0.16 -1.44 4.87 -2.91 -0.01 -1.46 16 43 H 0.12 -0.32 7.96 -2.38 -0.02 -0.34 16 44 H 0.39 -1.33 8.70 -74.06 -0.64 -1.98 16 45 H -0.28 0.38 7.11 99.48 0.71 1.09 16 46 H -0.31 -1.34 7.11 99.48 0.71 -0.63 16 47 H 0.14 0.36 6.30 -2.91 -0.02 0.34 16 Total: 0.00 -29.28 381.03 1.40 -27.87 By element: Atomic # 1 Polarization: -12.02 SS G_CDS: 0.39 Total: -11.62 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 6.19 Total: 10.57 kcal Atomic # 7 Polarization: 0.34 SS G_CDS: -2.53 Total: -2.19 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -4.69 Total: -23.46 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.04 Total: -1.16 kcal Total: -29.28 1.40 -27.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10122440_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.007 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds