Wall clock time and date at job start Tue Mar 9 2021 13:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99698 * 2 1 4 4 H 1.09005 * 112.85090 * 18.80202 * 3 2 1 5 5 C 1.53780 * 113.61808 * 149.99812 * 3 2 1 6 6 C 1.53781 * 87.08457 * 140.06404 * 5 3 2 7 7 H 1.08998 * 113.61174 * 89.20371 * 6 5 3 8 8 N 1.46501 * 113.61273 * 220.02119 * 6 5 3 9 9 C 1.46503 * 120.00081 * 54.46977 * 8 6 5 10 10 C 1.34774 * 120.00063 * 234.46414 * 8 6 5 11 11 O 1.21627 * 119.99776 * 5.47858 * 10 8 6 12 12 C 1.47262 * 119.99853 * 185.48328 * 10 8 6 13 13 C 1.36775 * 126.93642 * 174.18149 * 12 10 8 14 14 C 1.50699 * 125.80563 * 0.02562 * 13 12 10 15 15 N 1.34665 * 108.39322 * 179.79017 * 13 12 10 16 16 C 1.36450 * 110.29650 * 0.37825 * 15 13 12 17 17 C 1.50701 * 125.56941 * 179.88423 * 16 15 13 18 18 O 1.42903 * 109.46566 * 244.69024 * 17 16 15 19 19 Si 1.86293 * 109.47189 * 4.69005 * 17 16 15 20 20 C 1.34488 * 108.85552 * 359.61455 * 16 15 13 21 21 C 1.53780 * 87.17191 * 334.61180 * 6 5 3 22 22 H 1.08997 * 109.46980 * 60.00239 * 1 2 3 23 23 H 1.09004 * 109.46861 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47439 * 300.00163 * 1 2 3 25 25 H 1.09003 * 113.61012 * 25.51166 * 5 3 2 26 26 H 1.08993 * 113.69263 * 254.63012 * 5 3 2 27 27 H 1.09003 * 109.47233 * 238.39974 * 9 8 6 28 28 H 1.09000 * 109.46882 * 358.39362 * 9 8 6 29 29 H 1.08993 * 109.47542 * 118.39467 * 9 8 6 30 30 H 1.09002 * 109.46895 * 90.00300 * 14 13 12 31 31 H 1.08999 * 109.47045 * 210.00557 * 14 13 12 32 32 H 1.09001 * 109.47096 * 330.00358 * 14 13 12 33 33 H 0.96996 * 124.85309 * 180.22903 * 15 13 12 34 34 H 1.08993 * 109.47090 * 124.69204 * 17 16 15 35 35 H 0.96697 * 113.99989 * 60.00626 * 18 17 16 36 36 H 1.48507 * 110.00183 * 58.68110 * 19 17 16 37 37 H 1.48502 * 110.00002 * 180.02562 * 19 17 16 38 38 H 1.08002 * 126.83143 * 180.24513 * 20 16 15 39 39 H 1.09000 * 113.61384 * 139.93869 * 21 6 5 40 40 H 1.09001 * 113.61506 * 270.84567 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3238 5 6 3.3755 1.3721 0.7045 6 6 3.8220 2.3201 -0.4210 7 1 3.6221 3.3709 -0.2117 8 7 5.1929 2.0821 -0.8794 9 6 5.5950 0.7452 -1.3238 10 6 6.0842 3.0930 -0.8925 11 8 5.7811 4.1769 -0.4315 12 6 7.4249 2.8851 -1.4652 13 6 8.3945 3.8315 -1.6521 14 6 8.2790 5.2929 -1.3032 15 7 9.4719 3.2342 -2.1963 16 6 9.2318 1.9040 -2.3828 17 6 10.2021 0.9123 -2.9711 18 8 9.6839 0.4142 -4.2062 19 14 11.8378 1.7500 -3.2766 20 6 7.9901 1.6216 -1.9505 21 6 2.7530 1.6534 -1.3029 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 3.9094 0.4218 0.7126 26 1 3.3394 1.8455 1.6856 27 1 6.4301 0.3963 -0.7163 28 1 4.7554 0.0586 -1.2157 29 1 5.8987 0.7860 -2.3697 30 1 8.6223 5.4505 -0.2807 31 1 8.8928 5.8793 -1.9870 32 1 7.2385 5.6060 -1.3895 33 1 10.2994 3.6856 -2.4251 34 1 10.3421 0.0847 -2.2757 35 1 9.5343 1.0974 -4.8740 36 1 12.3720 2.3003 -2.0049 37 1 12.8033 0.7826 -3.8573 38 1 7.5055 0.6564 -1.9588 39 1 2.2137 2.3541 -1.9403 40 1 3.1164 0.7802 -1.8447 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10122440_9865296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:11 Heat of formation + Delta-G solvation = -17.046139 kcal Electronic energy + Delta-G solvation = -22591.966989 eV Core-core repulsion = 19183.153420 eV Total energy + Delta-G solvation = -3408.813569 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.53810 -41.07942 -39.38532 -37.83164 -37.29389 -35.14767 -32.79259 -31.98788 -28.98738 -28.32878 -27.74380 -26.69033 -26.02863 -24.66601 -22.79060 -21.72265 -20.39925 -19.52943 -18.70108 -18.20425 -17.59178 -16.93718 -16.81334 -16.52805 -16.28673 -16.00728 -15.82378 -15.26514 -15.12770 -14.97566 -14.75078 -14.25574 -14.12575 -13.96196 -13.76502 -13.40895 -13.39107 -13.19763 -12.82200 -12.66330 -12.61426 -12.30374 -12.24514 -12.14076 -11.84945 -11.72375 -10.78362 -10.46387 -10.42519 -9.84356 -9.52442 -9.06922 -5.33578 0.79686 1.01915 1.24356 1.39558 1.73174 1.96648 2.21931 2.63534 2.94028 3.29887 3.51702 3.58578 3.62405 3.83672 3.87641 3.88735 4.04307 4.21270 4.24494 4.33747 4.36030 4.47133 4.48624 4.53608 4.57995 4.70162 4.71625 4.76246 4.77484 4.78288 4.86079 4.95871 4.99398 5.05992 5.16373 5.27321 5.67770 5.75259 5.92446 6.26285 6.34318 6.42857 6.60010 7.45888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.064 3.936 4 H 0.092 0.908 5 C -0.149 4.149 6 C 0.126 3.874 7 H 0.124 0.876 8 N -0.599 5.599 9 C 0.071 3.929 10 C 0.594 3.406 11 O -0.549 6.549 12 C -0.238 4.238 13 C 0.123 3.877 14 C -0.097 4.097 15 N -0.545 5.545 16 C -0.033 4.033 17 C -0.032 4.032 18 O -0.534 6.534 19 Si 0.671 3.329 20 C -0.143 4.143 21 C -0.168 4.168 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.043 0.957 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.412 0.588 34 H 0.126 0.874 35 H 0.380 0.620 36 H -0.252 1.252 37 H -0.244 1.244 38 H 0.164 0.836 39 H 0.076 0.924 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 0.756 -2.758 2.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.005 3.995 4 H 0.109 0.891 5 C -0.188 4.188 6 C 0.022 3.978 7 H 0.142 0.858 8 N -0.331 5.331 9 C -0.072 4.072 10 C 0.386 3.614 11 O -0.428 6.428 12 C -0.248 4.248 13 C 0.004 3.996 14 C -0.155 4.155 15 N -0.144 5.144 16 C -0.141 4.141 17 C -0.144 4.144 18 O -0.339 6.339 19 Si 0.571 3.429 20 C -0.166 4.166 21 C -0.206 4.206 22 H 0.061 0.939 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.113 0.887 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.251 0.749 34 H 0.143 0.857 35 H 0.228 0.772 36 H -0.176 1.176 37 H -0.168 1.168 38 H 0.181 0.819 39 H 0.095 0.905 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.723 0.610 -2.067 2.760 hybrid contribution -0.160 -0.134 0.245 0.322 sum 1.563 0.476 -1.822 2.447 Atomic orbital electron populations 1.22822 0.80853 1.02987 1.00097 1.87940 1.19917 1.26977 1.94557 1.23498 0.93866 0.85653 0.96442 0.89056 1.23724 0.95292 1.00850 0.98915 1.22266 0.80229 1.00590 0.94698 0.85846 1.47434 1.10404 1.09935 1.65288 1.22301 1.01135 0.83649 1.00122 1.17368 0.83335 0.83204 0.77487 1.90738 1.79310 1.25230 1.47556 1.20060 0.95550 0.94033 1.15138 1.20384 0.86258 0.95523 0.97408 1.20620 1.05503 0.87300 1.02029 1.41729 1.14467 1.07979 1.50236 1.20632 0.98791 0.84209 1.10507 1.24405 1.03360 0.98690 0.87978 1.86546 1.87274 1.37398 1.22657 0.95465 0.76373 0.86092 0.84936 1.22677 0.93702 0.98169 1.02098 1.24047 0.97251 1.01527 0.97789 0.93892 0.89528 0.93852 0.88656 0.90284 0.91358 0.90413 0.91031 0.90070 0.91432 0.88009 0.74871 0.85718 0.77225 1.17632 1.16751 0.81912 0.90515 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 101.05 1.10 1.08 16 2 O -0.38 -0.73 10.72 -35.23 -0.38 -1.11 16 3 C 0.06 0.03 4.31 -25.83 -0.11 -0.08 16 4 H 0.09 -0.07 7.87 -51.93 -0.41 -0.48 16 5 C -0.15 -0.11 7.39 -25.92 -0.19 -0.30 16 6 C 0.13 0.17 4.22 -67.12 -0.28 -0.11 16 7 H 0.12 0.29 7.21 -51.93 -0.37 -0.08 16 8 N -0.60 -1.19 3.09 -174.33 -0.54 -1.73 16 9 C 0.07 -0.03 7.45 59.85 0.45 0.42 16 10 C 0.59 2.48 7.65 -12.59 -0.10 2.38 16 11 O -0.55 -3.67 14.37 5.25 0.08 -3.59 16 12 C -0.24 -0.63 6.17 -103.35 -0.64 -1.27 16 13 C 0.12 0.15 7.17 -81.88 -0.59 -0.44 16 14 C -0.10 0.00 9.82 36.01 0.35 0.35 16 15 N -0.54 0.54 5.41 -5.42 -0.03 0.51 16 16 C -0.03 0.01 6.09 -81.86 -0.50 -0.49 16 17 C -0.03 0.05 2.98 36.01 0.11 0.15 16 18 O -0.53 0.55 12.88 -35.23 -0.45 0.10 16 19 Si 0.67 -1.73 30.95 -169.99 -5.26 -6.99 16 20 C -0.14 -0.13 8.75 -37.50 -0.33 -0.46 16 21 C -0.17 -0.04 7.33 -25.83 -0.19 -0.23 16 22 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 23 H 0.09 -0.11 8.14 -51.93 -0.42 -0.53 16 24 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.09 0.10 7.08 -51.93 -0.37 -0.27 16 26 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 27 H 0.07 -0.05 6.56 -51.93 -0.34 -0.39 16 28 H 0.08 -0.09 5.68 -51.93 -0.29 -0.38 16 29 H 0.07 -0.06 6.42 -51.93 -0.33 -0.40 16 30 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 31 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 32 H 0.10 0.19 6.60 -51.93 -0.34 -0.15 16 33 H 0.41 -1.52 6.72 -40.82 -0.27 -1.79 16 34 H 0.13 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.38 -1.76 8.70 45.56 0.40 -1.36 16 36 H -0.25 0.06 7.11 56.52 0.40 0.46 16 37 H -0.24 -0.20 7.11 56.52 0.40 0.20 16 38 H 0.16 -0.06 4.49 -52.49 -0.24 -0.30 16 39 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 40 H 0.10 0.03 6.40 -51.93 -0.33 -0.30 16 LS Contribution 320.51 15.07 4.83 4.83 Total: 0.00 -7.94 320.51 -8.16 -16.09 By element: Atomic # 1 Polarization: -3.64 SS G_CDS: -5.48 Total: -9.12 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.92 Total: 1.01 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -0.57 Total: -1.22 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.76 Total: -4.60 kcal Atomic # 14 Polarization: -1.73 SS G_CDS: -5.26 Total: -6.99 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -7.94 -8.16 -16.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10122440_9865296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.955 kcal (2) G-P(sol) polarization free energy of solvation -7.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds