Wall clock time and date at job start Tue Mar 9 2021 13:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99698 * 2 1 4 4 H 1.09005 * 112.85090 * 18.80202 * 3 2 1 5 5 C 1.53780 * 113.61808 * 149.99812 * 3 2 1 6 6 C 1.53781 * 87.08457 * 140.06404 * 5 3 2 7 7 H 1.08998 * 113.61174 * 89.20371 * 6 5 3 8 8 N 1.46501 * 113.61273 * 220.02119 * 6 5 3 9 9 C 1.46503 * 120.00081 * 54.46977 * 8 6 5 10 10 C 1.34774 * 120.00063 * 234.46414 * 8 6 5 11 11 O 1.21627 * 119.99776 * 5.47858 * 10 8 6 12 12 C 1.47262 * 119.99853 * 185.48328 * 10 8 6 13 13 C 1.36775 * 126.93642 * 174.18149 * 12 10 8 14 14 C 1.50699 * 125.80563 * 0.02562 * 13 12 10 15 15 N 1.34665 * 108.39322 * 179.79017 * 13 12 10 16 16 C 1.36450 * 110.29650 * 0.37825 * 15 13 12 17 17 C 1.50701 * 125.56941 * 179.88423 * 16 15 13 18 18 O 1.42903 * 109.46566 * 244.69024 * 17 16 15 19 19 Si 1.86293 * 109.47189 * 4.69005 * 17 16 15 20 20 C 1.34488 * 108.85552 * 359.61455 * 16 15 13 21 21 C 1.53780 * 87.17191 * 334.61180 * 6 5 3 22 22 H 1.08997 * 109.46980 * 60.00239 * 1 2 3 23 23 H 1.09004 * 109.46861 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47439 * 300.00163 * 1 2 3 25 25 H 1.09003 * 113.61012 * 25.51166 * 5 3 2 26 26 H 1.08993 * 113.69263 * 254.63012 * 5 3 2 27 27 H 1.09003 * 109.47233 * 238.39974 * 9 8 6 28 28 H 1.09000 * 109.46882 * 358.39362 * 9 8 6 29 29 H 1.08993 * 109.47542 * 118.39467 * 9 8 6 30 30 H 1.09002 * 109.46895 * 90.00300 * 14 13 12 31 31 H 1.08999 * 109.47045 * 210.00557 * 14 13 12 32 32 H 1.09001 * 109.47096 * 330.00358 * 14 13 12 33 33 H 0.96996 * 124.85309 * 180.22903 * 15 13 12 34 34 H 1.08993 * 109.47090 * 124.69204 * 17 16 15 35 35 H 0.96697 * 113.99989 * 60.00626 * 18 17 16 36 36 H 1.48507 * 110.00183 * 58.68110 * 19 17 16 37 37 H 1.48502 * 110.00002 * 180.02562 * 19 17 16 38 38 H 1.08002 * 126.83143 * 180.24513 * 20 16 15 39 39 H 1.09000 * 113.61384 * 139.93869 * 21 6 5 40 40 H 1.09001 * 113.61506 * 270.84567 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3238 5 6 3.3755 1.3721 0.7045 6 6 3.8220 2.3201 -0.4210 7 1 3.6221 3.3709 -0.2117 8 7 5.1929 2.0821 -0.8794 9 6 5.5950 0.7452 -1.3238 10 6 6.0842 3.0930 -0.8925 11 8 5.7811 4.1769 -0.4315 12 6 7.4249 2.8851 -1.4652 13 6 8.3945 3.8315 -1.6521 14 6 8.2790 5.2929 -1.3032 15 7 9.4719 3.2342 -2.1963 16 6 9.2318 1.9040 -2.3828 17 6 10.2021 0.9123 -2.9711 18 8 9.6839 0.4142 -4.2062 19 14 11.8378 1.7500 -3.2766 20 6 7.9901 1.6216 -1.9505 21 6 2.7530 1.6534 -1.3029 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 3.9094 0.4218 0.7126 26 1 3.3394 1.8455 1.6856 27 1 6.4301 0.3963 -0.7163 28 1 4.7554 0.0586 -1.2157 29 1 5.8987 0.7860 -2.3697 30 1 8.6223 5.4505 -0.2807 31 1 8.8928 5.8793 -1.9870 32 1 7.2385 5.6060 -1.3895 33 1 10.2994 3.6856 -2.4251 34 1 10.3421 0.0847 -2.2757 35 1 9.5343 1.0974 -4.8740 36 1 12.3720 2.3003 -2.0049 37 1 12.8033 0.7826 -3.8573 38 1 7.5055 0.6564 -1.9588 39 1 2.2137 2.3541 -1.9403 40 1 3.1164 0.7802 -1.8447 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10122440_9865296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:11 Heat of formation + Delta-G solvation = -17.209991 kcal Electronic energy + Delta-G solvation = -22591.974094 eV Core-core repulsion = 19183.153420 eV Total energy + Delta-G solvation = -3408.820674 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.57195 -41.17952 -39.54738 -37.74226 -37.40768 -35.26779 -32.80070 -32.03094 -28.95391 -28.36681 -27.74486 -26.74959 -26.08898 -24.68095 -22.86052 -21.72898 -20.46647 -19.64375 -18.68365 -18.27284 -17.60223 -16.98352 -16.86656 -16.59178 -16.27828 -16.07942 -15.85796 -15.27632 -15.11471 -15.01128 -14.75933 -14.33680 -14.11801 -14.05037 -13.83070 -13.50195 -13.37374 -13.19649 -12.80455 -12.67764 -12.54908 -12.31614 -12.23688 -12.19054 -11.91335 -11.75134 -10.93325 -10.48018 -10.45093 -9.90420 -9.66906 -9.11085 -5.15013 0.66999 1.15423 1.25569 1.51830 1.83498 1.94963 2.20552 2.44686 2.92996 3.43277 3.46554 3.53033 3.69079 3.81171 3.81568 3.87553 4.02209 4.22935 4.25243 4.33272 4.45934 4.49255 4.53279 4.55646 4.59068 4.68675 4.70986 4.72239 4.75026 4.81383 4.87833 4.93251 4.94756 5.04388 5.10167 5.23891 5.59039 5.69410 5.88099 6.25457 6.40427 6.48100 6.72950 7.23404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.066 3.934 4 H 0.103 0.897 5 C -0.146 4.146 6 C 0.120 3.880 7 H 0.109 0.891 8 N -0.598 5.598 9 C 0.071 3.929 10 C 0.584 3.416 11 O -0.586 6.586 12 C -0.265 4.265 13 C 0.119 3.881 14 C -0.094 4.094 15 N -0.533 5.533 16 C -0.026 4.026 17 C -0.037 4.037 18 O -0.548 6.548 19 Si 0.766 3.234 20 C -0.154 4.154 21 C -0.158 4.158 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.426 0.574 34 H 0.123 0.877 35 H 0.396 0.604 36 H -0.279 1.279 37 H -0.290 1.290 38 H 0.172 0.828 39 H 0.081 0.919 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 0.478 -3.485 3.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.008 3.992 4 H 0.121 0.879 5 C -0.185 4.185 6 C 0.016 3.984 7 H 0.127 0.873 8 N -0.328 5.328 9 C -0.071 4.071 10 C 0.377 3.623 11 O -0.469 6.469 12 C -0.275 4.275 13 C -0.001 4.001 14 C -0.152 4.152 15 N -0.133 5.133 16 C -0.135 4.135 17 C -0.148 4.148 18 O -0.355 6.355 19 Si 0.670 3.330 20 C -0.177 4.177 21 C -0.197 4.197 22 H 0.068 0.932 23 H 0.111 0.889 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.268 0.732 34 H 0.140 0.860 35 H 0.246 0.754 36 H -0.206 1.206 37 H -0.217 1.217 38 H 0.189 0.811 39 H 0.100 0.900 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.099 0.317 -2.817 3.527 hybrid contribution -0.269 -0.102 0.462 0.545 sum 1.830 0.214 -2.355 2.990 Atomic orbital electron populations 1.22963 0.79758 1.03717 1.00822 1.87904 1.21242 1.27665 1.94661 1.23537 0.93830 0.85610 0.96261 0.87878 1.23683 0.95667 1.00425 0.98689 1.22264 0.80415 1.00059 0.95634 0.87305 1.47534 1.10313 1.10391 1.64596 1.22402 1.01625 0.82551 1.00535 1.17735 0.84203 0.83089 0.77312 1.90704 1.80124 1.26627 1.49416 1.20158 0.95426 0.95414 1.16498 1.20539 0.86529 0.95872 0.97153 1.20587 1.04681 0.87130 1.02756 1.41689 1.14529 1.07778 1.49305 1.20805 0.98559 0.84499 1.09625 1.24588 1.03768 0.98507 0.87983 1.86516 1.87312 1.38602 1.23060 0.94340 0.73093 0.83603 0.81961 1.22822 0.94306 0.98051 1.02539 1.23973 0.96616 1.01381 0.97708 0.93158 0.88875 0.93138 0.88872 0.90400 0.90925 0.89578 0.90342 0.90132 0.88641 0.90183 0.73198 0.85972 0.75393 1.20615 1.21665 0.81084 0.90026 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.40 -1.51 10.72 -148.98 -1.60 -3.11 16 3 C 0.07 0.07 4.31 31.18 0.13 0.20 16 4 H 0.10 -0.16 7.87 -2.38 -0.02 -0.18 16 5 C -0.15 -0.33 7.39 31.12 0.23 -0.10 16 6 C 0.12 0.47 4.22 45.52 0.19 0.67 16 7 H 0.11 0.75 7.21 -2.39 -0.02 0.73 16 8 N -0.60 -3.11 3.09 -823.70 -2.54 -5.65 16 9 C 0.07 -0.03 7.45 127.77 0.95 0.92 16 10 C 0.58 5.89 7.65 86.62 0.66 6.56 16 11 O -0.59 -9.30 14.37 -4.12 -0.06 -9.36 16 12 C -0.27 -1.64 6.17 -19.04 -0.12 -1.75 16 13 C 0.12 0.31 7.17 41.78 0.30 0.61 16 14 C -0.09 -0.05 9.82 71.24 0.70 0.65 16 15 N -0.53 1.45 5.41 -171.06 -0.93 0.52 16 16 C -0.03 0.03 6.09 40.98 0.25 0.28 16 17 C -0.04 0.14 2.98 71.24 0.21 0.35 16 18 O -0.55 1.69 12.88 -148.98 -1.92 -0.23 16 19 Si 0.77 -4.59 30.95 68.60 2.12 -2.47 16 20 C -0.15 -0.29 8.75 23.62 0.21 -0.09 16 21 C -0.16 -0.13 7.33 31.18 0.23 0.10 16 22 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 23 H 0.09 -0.27 8.14 -2.38 -0.02 -0.29 16 24 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.09 0.25 7.08 -2.39 -0.02 0.23 16 26 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.07 -0.08 6.56 -2.39 -0.02 -0.10 16 28 H 0.09 -0.18 5.68 -2.39 -0.01 -0.20 16 29 H 0.08 -0.13 6.42 -2.39 -0.02 -0.15 16 30 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.08 0.45 6.60 -2.39 -0.02 0.43 16 33 H 0.43 -3.74 6.72 -92.71 -0.62 -4.36 16 34 H 0.12 -0.39 7.96 -2.39 -0.02 -0.41 16 35 H 0.40 -4.20 8.70 -74.06 -0.64 -4.85 16 36 H -0.28 0.35 7.11 99.48 0.71 1.06 16 37 H -0.29 -0.54 7.11 99.48 0.71 0.16 16 38 H 0.17 -0.14 4.49 -2.91 -0.01 -0.15 16 39 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.10 0.07 6.40 -2.39 -0.02 0.06 16 Total: 0.00 -19.53 320.51 0.11 -19.42 By element: Atomic # 1 Polarization: -8.58 SS G_CDS: -0.15 Total: -8.73 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 5.18 Total: 9.61 kcal Atomic # 7 Polarization: -1.66 SS G_CDS: -3.47 Total: -5.13 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -3.58 Total: -12.70 kcal Atomic # 14 Polarization: -4.59 SS G_CDS: 2.12 Total: -2.47 kcal Total: -19.53 0.11 -19.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10122440_9865296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.207 kcal (2) G-P(sol) polarization free energy of solvation -19.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds