Wall clock time and date at job start Tue Mar 9 2021 14:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46958 * 2 1 4 4 H 1.08996 * 109.47363 * 304.99930 * 3 2 1 5 5 C 1.53006 * 109.47217 * 65.00291 * 3 2 1 6 6 C 1.52992 * 109.47127 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47207 * 299.99621 * 6 5 3 8 8 H 1.08996 * 109.47145 * 300.00207 * 7 6 5 9 9 N 1.46504 * 109.47288 * 180.02562 * 7 6 5 10 10 C 1.34774 * 120.00045 * 85.00095 * 9 7 6 11 11 O 1.21283 * 119.99805 * 4.86611 * 10 9 7 12 12 C 1.50697 * 119.99958 * 184.86963 * 10 9 7 13 13 C 1.53042 * 109.33066 * 215.87832 * 12 10 9 14 14 C 1.53539 * 108.56355 * 190.34005 * 13 12 10 15 15 N 1.47029 * 107.65774 * 60.94706 * 14 13 12 16 16 C 1.38924 * 118.88703 * 316.33776 * 15 14 13 17 17 C 1.31114 * 121.84402 * 13.31256 * 16 15 14 18 18 C 1.50708 * 118.54486 * 179.61935 * 17 16 15 19 19 O 1.42895 * 109.47164 * 109.59004 * 18 17 16 20 20 Si 1.86301 * 109.46736 * 349.59349 * 18 17 16 21 21 C 1.52999 * 109.47006 * 60.00031 * 7 6 5 22 22 C 1.52995 * 109.47355 * 300.00310 * 21 7 6 23 23 H 1.09004 * 109.47423 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.46882 * 59.99917 * 1 2 3 25 25 H 1.09000 * 109.47097 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46994 * 240.00057 * 2 1 3 27 27 H 1.09004 * 109.46882 * 120.00083 * 2 1 3 28 28 H 1.09002 * 109.46411 * 299.99651 * 5 3 2 29 29 H 1.08996 * 109.47249 * 59.99568 * 5 3 2 30 30 H 1.09000 * 109.46949 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.47581 * 60.00035 * 6 5 3 32 32 H 0.97003 * 119.99943 * 265.00407 * 9 7 6 33 33 H 1.08998 * 109.32876 * 335.52835 * 12 10 9 34 34 H 1.09005 * 109.61620 * 310.06367 * 13 12 10 35 35 H 1.09000 * 109.62022 * 70.61221 * 13 12 10 36 36 H 1.09001 * 109.82136 * 180.48511 * 14 13 12 37 37 H 1.09002 * 109.81911 * 301.40710 * 14 13 12 38 38 H 0.97003 * 120.55346 * 136.31497 * 15 14 13 39 39 H 1.07999 * 119.07995 * 193.31651 * 16 15 14 40 40 H 1.08990 * 109.47153 * 229.59234 * 18 17 16 41 41 H 0.96703 * 114.00087 * 180.02562 * 19 18 17 42 42 H 1.48496 * 109.99890 * 298.67671 * 20 18 17 43 43 H 1.48498 * 110.00511 * 60.00042 * 20 18 17 44 44 H 1.09005 * 109.47527 * 60.00365 * 21 7 6 45 45 H 1.09007 * 109.47226 * 179.97438 * 21 7 6 46 46 H 1.09005 * 109.47553 * 180.02562 * 22 21 7 47 47 H 1.09010 * 109.46930 * 299.99729 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 2.1457 3.5688 1.3077 7 6 3.6706 3.5701 1.1823 8 1 4.1048 3.0308 2.0241 9 7 4.1595 4.9512 1.1831 10 6 4.3841 5.5858 2.3507 11 8 4.2666 4.9869 3.3988 12 6 4.7813 7.0395 2.3539 13 6 5.7777 7.2899 3.4882 14 6 5.9709 8.8052 3.6433 15 7 4.6649 9.3889 3.9831 16 6 3.5381 8.9599 3.2930 17 6 3.5547 7.8860 2.5409 18 6 2.2870 7.4835 1.8322 19 8 2.4346 7.7066 0.4285 20 14 0.8656 8.5010 2.4765 21 6 4.0753 2.8861 -0.1251 22 6 3.5648 1.4438 -0.1254 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.5489 2.1252 1.3969 29 1 2.0698 1.5875 2.1492 30 1 1.8570 4.0562 2.2389 31 1 1.7115 4.1082 0.4659 32 1 4.3215 5.4089 0.3433 33 1 5.2492 7.2877 1.4013 34 1 5.3872 6.8737 4.4169 35 1 6.7321 6.8220 3.2469 36 1 6.6849 9.0069 4.4419 37 1 6.3330 9.2294 2.7068 38 1 4.5913 10.0619 4.6777 39 1 2.6228 9.5268 3.3784 40 1 2.0892 6.4271 2.0134 41 1 1.6547 7.4693 -0.0916 42 1 0.6814 8.2537 3.9291 43 1 1.1231 9.9435 2.2355 44 1 3.6411 3.4254 -0.9670 45 1 5.1617 2.8874 -0.2147 46 1 3.8535 0.9563 -1.0566 47 1 3.9991 0.9045 0.7165 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466078_15608500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:11:42 Heat of formation + Delta-G solvation = -68.665726 kcal Electronic energy + Delta-G solvation = -25626.685536 eV Core-core repulsion = 22195.929049 eV Total energy + Delta-G solvation = -3430.756487 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.62417 -40.08877 -38.97726 -37.46109 -36.03872 -33.91284 -33.01657 -32.97705 -31.73181 -29.31033 -27.19289 -26.04501 -24.43571 -23.59199 -23.21000 -21.78844 -21.51802 -20.73124 -19.23819 -18.85925 -18.34734 -17.85122 -17.29399 -16.86205 -16.08961 -15.74919 -15.57061 -15.15657 -15.06005 -14.99012 -14.77014 -14.61369 -14.34394 -14.29697 -14.02537 -13.79173 -13.72689 -13.68289 -13.17311 -12.89060 -12.73404 -12.46449 -12.39024 -12.27297 -12.05108 -12.02724 -11.69315 -11.63050 -11.53283 -11.38908 -11.20584 -10.99904 -10.71150 -10.17755 -9.96814 -8.60754 -4.99134 1.08088 1.29752 1.57628 1.64822 1.90078 2.24796 2.48258 3.47824 3.55742 3.66993 3.73557 3.77912 3.88019 3.97194 4.07891 4.10905 4.19303 4.21791 4.28765 4.39227 4.43168 4.47435 4.52298 4.53511 4.57768 4.60176 4.66686 4.71110 4.74975 4.80141 4.87082 5.04969 5.06236 5.11787 5.15287 5.16674 5.19290 5.22451 5.27956 5.31552 5.32943 5.36938 5.51910 5.59217 5.63243 6.14611 6.57645 6.75348 6.97654 7.27303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.082 4.082 4 H 0.081 0.919 5 C -0.110 4.110 6 C -0.121 4.121 7 C 0.145 3.855 8 H 0.056 0.944 9 N -0.709 5.709 10 C 0.529 3.471 11 O -0.586 6.586 12 C -0.034 4.034 13 C -0.128 4.128 14 C 0.124 3.876 15 N -0.749 5.749 16 C 0.134 3.866 17 C -0.243 4.243 18 C -0.050 4.050 19 O -0.553 6.553 20 Si 0.751 3.249 21 C -0.117 4.117 22 C -0.111 4.111 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.414 0.586 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.411 0.589 39 H 0.122 0.878 40 H 0.058 0.942 41 H 0.395 0.605 42 H -0.304 1.304 43 H -0.281 1.281 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 0.928 -5.259 5.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.101 4.101 4 H 0.099 0.901 5 C -0.148 4.148 6 C -0.160 4.160 7 C 0.040 3.960 8 H 0.074 0.926 9 N -0.359 5.359 10 C 0.316 3.684 11 O -0.466 6.466 12 C -0.056 4.056 13 C -0.167 4.167 14 C 0.000 4.000 15 N -0.380 5.380 16 C 0.011 3.989 17 C -0.254 4.254 18 C -0.161 4.161 19 O -0.361 6.361 20 Si 0.658 3.342 21 C -0.155 4.155 22 C -0.149 4.149 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.251 0.749 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.247 0.753 39 H 0.139 0.861 40 H 0.076 0.924 41 H 0.244 0.756 42 H -0.232 1.232 43 H -0.209 1.209 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.696 1.263 -3.849 4.110 hybrid contribution 0.467 0.172 0.503 0.708 sum -0.229 1.435 -3.346 3.648 Atomic orbital electron populations 1.21829 0.95732 1.01616 1.02059 1.21564 0.96085 0.96290 1.01856 1.21179 0.95211 0.95885 0.97791 0.90109 1.21573 1.01130 0.94543 0.97593 1.21854 0.94722 0.97632 1.01791 1.20972 0.94302 0.81699 0.98982 0.92564 1.46056 1.66699 1.14578 1.08609 1.20712 0.75320 0.88918 0.83452 1.90670 1.53884 1.68766 1.33306 1.19666 0.94822 0.89809 1.01267 1.21827 0.99150 0.97612 0.98075 1.21713 0.84582 0.91410 1.02306 1.44607 1.05074 1.46328 1.41991 1.20376 0.90882 0.93880 0.93729 1.19828 0.96500 0.99206 1.09869 1.24443 1.01445 1.04297 0.85964 1.86443 1.44483 1.89072 1.16088 0.94592 0.83580 0.76936 0.79044 1.21735 1.01389 0.96337 0.96002 1.21541 0.95319 0.95617 1.02410 0.92643 0.92280 0.93019 0.91597 0.92756 0.90897 0.93361 0.93962 0.89812 0.74945 0.87898 0.92423 0.89230 0.87803 0.91040 0.75343 0.86107 0.92383 0.75562 1.23196 1.20891 0.89603 0.91279 0.90429 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.33 9.67 71.98 0.70 1.02 16 2 C -0.12 0.25 5.40 30.59 0.17 0.41 16 3 C -0.08 0.23 2.19 -10.79 -0.02 0.21 16 4 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 5 C -0.11 0.04 4.96 30.59 0.15 0.19 16 6 C -0.12 -0.06 5.49 30.59 0.17 0.11 16 7 C 0.14 0.22 2.49 44.99 0.11 0.34 16 8 H 0.06 0.45 7.51 -2.39 -0.02 0.43 16 9 N -0.71 -1.01 5.00 -442.54 -2.21 -3.22 16 10 C 0.53 4.08 5.24 87.66 0.46 4.54 16 11 O -0.59 -9.80 15.71 -3.04 -0.05 -9.84 16 12 C -0.03 -0.16 2.71 -12.43 -0.03 -0.19 16 13 C -0.13 -0.47 5.31 30.79 0.16 -0.30 16 14 C 0.12 -0.08 7.16 86.46 0.62 0.54 16 15 N -0.75 -1.36 5.83 -345.90 -2.02 -3.38 16 16 C 0.13 0.74 9.61 83.41 0.80 1.55 16 17 C -0.24 -1.40 5.06 -16.76 -0.08 -1.49 16 18 C -0.05 -0.09 2.41 71.24 0.17 0.08 16 19 O -0.55 1.02 12.86 -148.98 -1.92 -0.90 16 20 Si 0.75 0.44 29.93 68.60 2.05 2.50 16 21 C -0.12 0.38 5.39 30.59 0.16 0.54 16 22 C -0.11 0.31 5.20 30.59 0.16 0.47 16 23 H 0.05 -0.09 6.57 -2.39 -0.02 -0.11 16 24 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 25 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 26 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16 28 H 0.07 -0.08 6.56 -2.39 -0.02 -0.10 16 29 H 0.05 0.13 8.14 -2.39 -0.02 0.12 16 30 H 0.04 0.24 8.12 -2.39 -0.02 0.22 16 31 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.41 -1.26 8.56 -92.71 -0.79 -2.05 16 33 H 0.10 0.16 8.08 -2.39 -0.02 0.14 16 34 H 0.06 0.55 7.50 -2.38 -0.02 0.54 16 35 H 0.09 0.08 8.14 -2.39 -0.02 0.07 16 36 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.41 -0.88 8.96 -92.71 -0.83 -1.71 16 39 H 0.12 0.63 4.34 -2.91 -0.01 0.62 16 40 H 0.06 0.18 6.75 -2.39 -0.02 0.16 16 41 H 0.39 -4.32 8.74 -74.06 -0.65 -4.97 16 42 H -0.30 -2.53 7.11 99.48 0.71 -1.82 16 43 H -0.28 -1.50 6.87 99.48 0.68 -0.81 16 44 H 0.09 -0.52 8.14 -2.38 -0.02 -0.54 16 45 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 46 H 0.08 -0.33 8.14 -2.38 -0.02 -0.35 16 47 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16 Total: 0.00 -17.36 357.28 -1.73 -19.09 By element: Atomic # 1 Polarization: -10.98 SS G_CDS: -1.29 Total: -12.26 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 3.69 Total: 8.02 kcal Atomic # 7 Polarization: -2.37 SS G_CDS: -4.23 Total: -6.60 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.96 Total: -10.74 kcal Atomic # 14 Polarization: 0.44 SS G_CDS: 2.05 Total: 2.50 kcal Total: -17.36 -1.73 -19.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466078_15608500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.572 kcal (2) G-P(sol) polarization free energy of solvation -17.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds