Wall clock time and date at job start Tue Mar 9 2021 14:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47219 * 2 1 4 4 H 1.08997 * 109.46493 * 55.00372 * 3 2 1 5 5 C 1.53004 * 109.46636 * 175.00140 * 3 2 1 6 6 C 1.53005 * 109.46636 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47016 * 300.00240 * 6 5 3 8 8 H 1.08997 * 109.47484 * 299.99386 * 7 6 5 9 9 N 1.46505 * 109.46792 * 179.97438 * 7 6 5 10 10 C 1.34777 * 120.00115 * 154.99920 * 9 7 6 11 11 O 1.21282 * 119.99620 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00369 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47466 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 10 15 15 O 1.42903 * 109.46726 * 180.02562 * 14 13 12 16 16 C 1.35904 * 116.99628 * 179.97438 * 15 14 13 17 17 C 1.38717 * 120.05444 * 179.72714 * 16 15 14 18 18 C 1.38162 * 119.94375 * 179.71800 * 17 16 15 19 19 C 1.50702 * 119.97399 * 180.27370 * 18 17 16 20 20 O 1.42893 * 109.46921 * 65.30125 * 19 18 17 21 21 Si 1.86305 * 109.47097 * 185.30274 * 19 18 17 22 22 C 1.38243 * 120.05462 * 0.57629 * 18 17 16 23 23 C 1.38287 * 120.11360 * 359.67477 * 22 18 17 24 24 C 1.38122 * 120.05288 * 0.04810 * 23 22 18 25 25 C 1.52995 * 109.47494 * 60.00444 * 7 6 5 26 26 C 1.52998 * 109.47016 * 295.00380 * 3 2 1 27 27 H 1.09000 * 109.46639 * 300.00140 * 1 2 3 28 28 H 1.08998 * 109.47182 * 59.99169 * 1 2 3 29 29 H 1.08992 * 109.47686 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46751 * 240.00392 * 2 1 3 31 31 H 1.08998 * 109.47182 * 120.00831 * 2 1 3 32 32 H 1.08998 * 109.46972 * 60.00938 * 5 3 2 33 33 H 1.08992 * 109.47122 * 300.00326 * 5 3 2 34 34 H 1.08995 * 109.46887 * 179.97438 * 6 5 3 35 35 H 1.08996 * 109.46979 * 60.00046 * 6 5 3 36 36 H 0.97003 * 120.00244 * 334.99950 * 9 7 6 37 37 H 1.09002 * 109.47120 * 59.99760 * 12 10 9 38 38 H 1.08998 * 109.46862 * 300.00562 * 12 10 9 39 39 H 1.09002 * 109.47153 * 59.99773 * 13 12 10 40 40 H 1.09001 * 109.46832 * 299.99964 * 13 12 10 41 41 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 42 42 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 43 43 H 1.07995 * 120.02325 * 359.97438 * 17 16 15 44 44 H 1.09003 * 109.46891 * 305.30162 * 19 18 17 45 45 H 0.96698 * 114.00356 * 60.00204 * 20 19 18 46 46 H 1.48500 * 109.99787 * 180.02562 * 21 19 18 47 47 H 1.48497 * 109.99651 * 301.31733 * 21 19 18 48 48 H 1.08003 * 119.94369 * 179.69680 * 22 18 17 49 49 H 1.07998 * 119.97786 * 180.02562 * 23 22 18 50 50 H 1.08007 * 120.02654 * 179.97438 * 24 23 22 51 51 H 1.08997 * 109.47619 * 59.99025 * 25 7 6 52 52 H 1.08998 * 109.47402 * 179.97438 * 25 7 6 53 53 H 1.08996 * 109.47088 * 299.99738 * 26 3 2 54 54 H 1.08995 * 109.47580 * 60.00073 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5649 1.4442 0.1257 6 6 4.0749 2.8868 0.1263 7 6 3.6701 3.5714 -1.1807 8 1 4.1047 3.0329 -2.0228 9 7 4.1579 4.9528 -1.1797 10 6 4.3824 5.5890 -2.3465 11 8 4.1811 5.0176 -3.3972 12 6 4.8848 7.0098 -2.3456 13 6 5.0541 7.4918 -3.7877 14 6 5.5647 8.9341 -3.7867 15 8 5.7223 9.3845 -5.1337 16 6 6.1712 10.6549 -5.3109 17 6 6.3526 11.1553 -6.5919 18 6 6.8036 12.4492 -6.7694 19 6 6.9950 12.9956 -8.1608 20 8 5.7288 13.0801 -8.8176 21 14 7.7581 14.6923 -8.0621 22 6 7.0853 13.2409 -5.6717 23 6 6.9103 12.7427 -4.3937 24 6 6.4542 11.4518 -4.2109 25 6 2.1453 3.5697 -1.3063 26 6 1.6352 2.1266 -1.3073 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 3.9994 0.9053 -0.7162 33 1 3.8532 0.9568 1.0570 34 1 5.1611 2.8880 0.2163 35 1 3.6403 3.4254 0.9684 36 1 4.3192 5.4097 -0.3394 37 1 5.8450 7.0553 -1.8317 38 1 4.1669 7.6486 -1.8312 39 1 4.0937 7.4463 -4.3012 40 1 5.7718 6.8530 -4.3024 41 1 4.8473 9.5732 -3.2719 42 1 6.5251 8.9792 -3.2735 43 1 6.1376 10.5354 -7.4497 44 1 7.6529 12.3335 -8.7238 45 1 5.0915 13.6540 -8.3709 46 1 7.9514 15.2424 -9.4279 47 1 6.8859 15.5961 -7.2699 48 1 7.4424 14.2504 -5.8126 49 1 7.1307 13.3632 -3.5377 50 1 6.3181 11.0630 -3.2125 51 1 1.7106 4.1082 -0.4642 52 1 1.8568 4.0578 -2.2372 53 1 2.0698 1.5876 -2.1491 54 1 0.5490 2.1253 -1.3969 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466078_4549616.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:12:00 Heat of formation + Delta-G solvation = -109.830690 kcal Electronic energy + Delta-G solvation = -29494.191389 eV Core-core repulsion = 25396.403674 eV Total energy + Delta-G solvation = -4097.787715 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.213 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.34122 -41.11294 -39.59738 -39.18455 -37.42674 -36.15258 -34.90686 -33.41051 -32.48256 -31.78624 -31.24690 -29.59104 -27.96577 -26.80816 -24.71222 -23.87357 -23.68481 -23.15792 -21.88255 -21.64017 -21.37980 -20.68025 -19.23500 -18.15379 -17.92797 -17.47244 -17.34430 -17.17043 -16.87520 -16.46489 -16.17149 -15.94837 -15.63233 -15.51707 -15.16787 -15.01505 -14.78392 -14.65317 -14.38616 -14.25804 -14.19618 -14.11668 -13.86702 -13.33140 -13.29504 -13.15742 -13.08870 -12.78382 -12.74943 -12.50541 -12.36230 -12.29919 -12.28272 -12.10571 -11.91569 -11.68200 -11.61706 -11.54818 -11.45993 -11.27677 -11.06072 -10.83200 -10.66107 -10.05957 -9.94074 -9.24775 -4.91142 0.21519 0.41016 1.28979 1.61042 1.61664 1.90612 1.99407 2.39187 2.67452 3.40060 3.58532 3.64877 3.67834 3.70196 3.82916 3.86016 3.87359 3.97853 4.06357 4.10906 4.14130 4.21136 4.25102 4.33020 4.35982 4.37668 4.41157 4.44208 4.47067 4.52301 4.52605 4.55317 4.63563 4.68660 4.70990 4.75216 4.82117 4.98898 4.99806 5.01100 5.06725 5.11952 5.13610 5.16291 5.17133 5.23736 5.27943 5.28910 5.31852 5.38815 5.45456 5.46658 5.53678 5.57920 5.74927 6.42926 6.45676 6.55498 7.26716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.078 0.922 5 C -0.112 4.112 6 C -0.117 4.117 7 C 0.145 3.855 8 H 0.058 0.942 9 N -0.716 5.716 10 C 0.507 3.493 11 O -0.591 6.591 12 C -0.127 4.127 13 C -0.102 4.102 14 C 0.059 3.941 15 O -0.339 6.339 16 C 0.115 3.885 17 C -0.152 4.152 18 C -0.082 4.082 19 C -0.093 4.093 20 O -0.551 6.551 21 Si 0.784 3.216 22 C -0.161 4.161 23 C -0.072 4.072 24 C -0.205 4.205 25 C -0.123 4.123 26 C -0.111 4.111 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.418 0.582 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.386 0.614 46 H -0.304 1.304 47 H -0.276 1.276 48 H 0.147 0.853 49 H 0.159 0.841 50 H 0.154 0.846 51 H 0.076 0.924 52 H 0.040 0.960 53 H 0.050 0.950 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 2.424 10.860 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.102 4.102 4 H 0.096 0.904 5 C -0.150 4.150 6 C -0.155 4.155 7 C 0.040 3.960 8 H 0.076 0.924 9 N -0.368 5.368 10 C 0.295 3.705 11 O -0.471 6.471 12 C -0.166 4.166 13 C -0.140 4.140 14 C -0.016 4.016 15 O -0.254 6.254 16 C 0.070 3.930 17 C -0.171 4.171 18 C -0.082 4.082 19 C -0.201 4.201 20 O -0.359 6.359 21 Si 0.688 3.312 22 C -0.179 4.179 23 C -0.090 4.090 24 C -0.223 4.223 25 C -0.162 4.162 26 C -0.149 4.149 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.255 0.745 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.137 0.863 45 H 0.235 0.765 46 H -0.233 1.233 47 H -0.202 1.202 48 H 0.164 0.836 49 H 0.177 0.823 50 H 0.171 0.829 51 H 0.095 0.905 52 H 0.059 0.941 53 H 0.069 0.931 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.718 2.282 9.408 10.055 hybrid contribution -1.434 -0.260 -0.232 1.476 sum 1.284 2.022 9.176 9.484 Atomic orbital electron populations 1.21831 0.95923 1.01660 1.01891 1.21567 0.95933 0.96262 1.02017 1.21192 0.95580 0.95895 0.97551 0.90394 1.21549 0.94960 0.95895 1.02587 1.21744 1.01708 0.96183 0.95836 1.20937 0.93802 0.82097 0.99158 0.92401 1.46020 1.67089 1.14664 1.08979 1.21223 0.76393 0.89593 0.83320 1.90734 1.53786 1.69347 1.33240 1.21534 1.05756 0.91664 0.97661 1.21148 1.01994 0.93894 0.96948 1.22987 1.02419 0.95285 0.80889 1.86057 1.80950 1.27065 1.31324 1.19214 0.95050 0.84125 0.94590 1.20340 1.05286 0.96393 0.95048 1.20123 0.98681 0.93320 0.96094 1.25441 0.89642 1.13614 0.91399 1.86578 1.24400 1.71191 1.53712 0.93844 0.87473 0.71537 0.78356 1.21221 1.03595 1.00671 0.92388 1.21304 0.95294 0.94590 0.97833 1.21607 1.06115 0.96038 0.98564 1.21854 0.95307 0.97538 1.01466 1.21583 1.00903 0.94639 0.97823 0.92428 0.92867 0.92859 0.92600 0.91400 0.92577 0.90259 0.90650 0.89624 0.74491 0.85310 0.85508 0.92431 0.92220 0.89928 0.89626 0.86680 0.86278 0.76470 1.23267 1.20248 0.83588 0.82331 0.82874 0.90543 0.94119 0.93101 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.22 9.67 71.98 0.70 0.92 16 2 C -0.12 0.22 5.40 30.60 0.17 0.39 16 3 C -0.08 0.22 2.19 -10.79 -0.02 0.19 16 4 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 5 C -0.11 0.40 5.20 30.60 0.16 0.56 16 6 C -0.12 0.59 5.39 30.60 0.16 0.76 16 7 C 0.14 -0.02 2.45 44.99 0.11 0.09 16 8 H 0.06 0.37 7.58 -2.39 -0.02 0.35 16 9 N -0.72 2.22 5.08 -442.54 -2.25 -0.03 16 10 C 0.51 1.14 7.79 87.66 0.68 1.82 16 11 O -0.59 -8.01 15.64 -3.04 -0.05 -8.06 16 12 C -0.13 0.75 5.70 29.85 0.17 0.92 16 13 C -0.10 -0.08 4.87 30.59 0.15 0.07 16 14 C 0.06 -0.12 4.74 71.98 0.34 0.23 16 15 O -0.34 -2.21 10.14 -92.47 -0.94 -3.15 16 16 C 0.12 0.60 6.69 22.51 0.15 0.75 16 17 C -0.15 -1.01 9.63 22.37 0.22 -0.80 16 18 C -0.08 -0.22 5.35 -19.88 -0.11 -0.33 16 19 C -0.09 -0.18 2.80 71.24 0.20 0.02 16 20 O -0.55 -3.07 12.84 -148.98 -1.91 -4.98 16 21 Si 0.78 -1.19 29.88 68.60 2.05 0.86 16 22 C -0.16 0.16 8.67 22.28 0.19 0.35 16 23 C -0.07 0.19 10.04 22.25 0.22 0.41 16 24 C -0.20 0.12 9.04 22.36 0.20 0.32 16 25 C -0.12 -0.11 5.50 30.61 0.17 0.06 16 26 C -0.11 -0.04 4.96 30.61 0.15 0.12 16 27 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.05 -0.03 6.56 -2.39 -0.02 -0.05 16 29 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H 0.42 -4.33 8.60 -92.71 -0.80 -5.13 16 37 H 0.13 -1.51 8.14 -2.39 -0.02 -1.53 16 38 H 0.13 -1.45 8.14 -2.39 -0.02 -1.46 16 39 H 0.06 0.33 8.10 -2.39 -0.02 0.31 16 40 H 0.06 0.32 8.10 -2.39 -0.02 0.30 16 41 H 0.08 -0.48 7.66 -2.39 -0.02 -0.50 16 42 H 0.09 -0.53 7.66 -2.39 -0.02 -0.55 16 43 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.12 0.14 7.96 -2.39 -0.02 0.12 16 45 H 0.39 -0.20 8.70 -74.06 -0.64 -0.84 16 46 H -0.30 -1.92 7.11 99.48 0.71 -1.21 16 47 H -0.28 -0.30 7.01 99.48 0.70 0.39 16 48 H 0.15 -0.76 4.84 -2.91 -0.01 -0.77 16 49 H 0.16 -1.36 8.06 -2.91 -0.02 -1.38 16 50 H 0.15 -0.94 6.30 -2.91 -0.02 -0.96 16 51 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 52 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 53 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 54 H 0.07 0.03 6.56 -2.39 -0.02 0.01 16 Total: 0.00 -22.99 422.50 0.39 -22.60 By element: Atomic # 1 Polarization: -13.56 SS G_CDS: -0.53 Total: -14.09 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 4.01 Total: 6.85 kcal Atomic # 7 Polarization: 2.22 SS G_CDS: -2.25 Total: -0.03 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -2.90 Total: -16.19 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: 2.05 Total: 0.86 kcal Total: -22.99 0.39 -22.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466078_4549616.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.229 kcal (2) G-P(sol) polarization free energy of solvation -22.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds