Wall clock time and date at job start Tue Mar 9 2021 14:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46899 * 2 1 4 4 H 1.08996 * 109.47151 * 55.00063 * 3 2 1 5 5 C 1.53003 * 109.46895 * 174.99775 * 3 2 1 6 6 C 1.53000 * 109.46895 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47139 * 299.99962 * 6 5 3 8 8 H 1.08996 * 109.47365 * 300.00195 * 7 6 5 9 9 N 1.46499 * 109.46829 * 180.02562 * 7 6 5 10 10 C 1.34775 * 119.99793 * 155.00238 * 9 7 6 11 11 O 1.21611 * 120.00089 * 0.02562 * 10 9 7 12 12 C 1.47378 * 119.99952 * 179.97438 * 10 9 7 13 13 C 1.36425 * 127.19395 * 179.97438 * 12 10 9 14 14 C 1.50705 * 125.79769 * 359.96665 * 13 12 10 15 15 O 1.42900 * 109.47259 * 89.71644 * 14 13 12 16 16 C 1.35899 * 116.99982 * 179.97438 * 15 14 13 17 17 C 1.38729 * 120.05294 * 180.02562 * 16 15 14 18 18 C 1.38146 * 119.94031 * 179.97438 * 17 16 15 19 19 C 1.38263 * 120.05914 * 359.97438 * 18 17 16 20 20 C 1.50697 * 119.94583 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.47590 * 300.00259 * 20 19 18 22 22 Si 1.86300 * 109.47007 * 179.97438 * 20 19 18 23 23 C 1.38271 * 120.10967 * 0.27730 * 19 18 17 24 24 C 1.38148 * 120.05274 * 359.44682 * 23 19 18 25 25 O 1.33649 * 108.39491 * 179.70374 * 13 12 10 26 26 C 1.34210 * 110.91211 * 0.25982 * 25 13 12 27 27 C 1.34175 * 109.12494 * 0.02562 * 26 25 13 28 28 C 1.52996 * 109.46761 * 60.00388 * 7 6 5 29 29 C 1.52991 * 109.47375 * 295.00122 * 3 2 1 30 30 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46927 * 299.99506 * 1 2 3 32 32 H 1.08993 * 109.46830 * 60.00041 * 1 2 3 33 33 H 1.08997 * 109.46959 * 239.99952 * 2 1 3 34 34 H 1.09007 * 109.47333 * 120.00020 * 2 1 3 35 35 H 1.08996 * 109.46986 * 60.00186 * 5 3 2 36 36 H 1.08991 * 109.47530 * 300.00312 * 5 3 2 37 37 H 1.09003 * 109.47275 * 180.02562 * 6 5 3 38 38 H 1.08996 * 109.47151 * 60.00287 * 6 5 3 39 39 H 0.96998 * 120.00334 * 334.99661 * 9 7 6 40 40 H 1.09003 * 109.46942 * 329.71158 * 14 13 12 41 41 H 1.08997 * 109.46856 * 209.71833 * 14 13 12 42 42 H 1.08002 * 120.03363 * 359.97438 * 17 16 15 43 43 H 1.07997 * 119.97046 * 180.02562 * 18 17 16 44 44 H 1.09001 * 109.46613 * 60.00397 * 20 19 18 45 45 H 0.96695 * 114.00385 * 180.02562 * 21 20 19 46 46 H 1.48506 * 110.00048 * 60.00676 * 22 20 19 47 47 H 1.48502 * 109.99996 * 181.32001 * 22 20 19 48 48 H 1.07996 * 119.97194 * 179.72944 * 23 19 18 49 49 H 1.07999 * 120.02648 * 180.26899 * 24 23 19 50 50 H 1.08003 * 125.43561 * 180.02562 * 26 25 13 51 51 H 1.08003 * 127.02566 * 180.02562 * 27 26 25 52 52 H 1.09005 * 109.47600 * 59.99851 * 28 7 6 53 53 H 1.09004 * 109.47234 * 179.97438 * 28 7 6 54 54 H 1.09009 * 109.46897 * 300.00331 * 29 3 2 55 55 H 1.09004 * 109.47516 * 59.99895 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 6 4.0747 2.8869 0.1264 7 6 3.6700 3.5715 -1.1807 8 1 4.1046 3.0329 -2.0227 9 7 4.1588 4.9525 -1.1803 10 6 4.3834 5.5882 -2.3473 11 8 4.1799 5.0155 -3.4006 12 6 4.8746 6.9777 -2.3469 13 6 5.1499 7.7554 -3.4334 14 6 5.0043 7.3397 -4.8747 15 8 3.6857 7.6507 -5.3293 16 6 3.3876 7.3381 -6.6177 17 6 2.1260 7.6128 -7.1253 18 6 1.8256 7.2944 -8.4355 19 6 2.7811 6.7030 -9.2411 20 6 2.4505 6.3563 -10.6699 21 8 1.3580 5.4356 -10.6961 22 14 3.9374 5.5799 -11.4805 23 6 4.0376 6.4235 -8.7361 24 6 4.3447 6.7451 -7.4281 25 8 5.5652 8.9504 -3.0024 26 6 5.5823 8.9965 -1.6612 27 6 5.1729 7.8146 -1.1755 28 6 2.1452 3.5696 -1.3063 29 6 1.6353 2.1266 -1.3072 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8935 -0.5139 0.8900 35 1 3.9995 0.9053 -0.7160 36 1 3.8532 0.9570 1.0571 37 1 5.1611 2.8882 0.2156 38 1 3.6401 3.4255 0.9685 39 1 4.3207 5.4095 -0.3401 40 1 5.1753 6.2668 -4.9624 41 1 5.7339 7.8747 -5.4825 42 1 1.3793 8.0751 -6.4966 43 1 0.8438 7.5085 -8.8312 44 1 2.1749 7.2626 -11.2092 45 1 1.0907 5.1676 -11.5859 46 1 4.3237 4.3433 -10.7547 47 1 3.6345 5.2624 -12.8992 48 1 4.7808 5.9575 -9.3660 49 1 5.3276 6.5305 -7.0354 50 1 5.8783 9.8488 -1.0677 51 1 5.0770 7.5366 -0.1363 52 1 1.7105 4.1083 -0.4643 53 1 1.8567 4.0577 -2.2373 54 1 2.0699 1.5875 -2.1491 55 1 0.5489 2.1253 -1.3969 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466078_4549634.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:12:12 Heat of formation + Delta-G solvation = -73.552554 kcal Electronic energy + Delta-G solvation = -35724.631902 eV Core-core repulsion = 31080.594331 eV Total energy + Delta-G solvation = -4644.037571 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.197 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.72729 -41.30928 -41.05705 -39.47830 -39.16253 -37.40445 -36.18107 -34.33206 -33.29369 -32.84018 -32.01589 -31.80227 -31.49889 -29.43858 -27.82574 -26.17685 -25.24701 -24.19479 -23.84584 -23.49879 -22.36547 -22.12419 -21.60801 -21.16021 -20.57273 -19.51850 -19.13361 -18.55466 -17.66182 -17.43061 -17.23736 -16.98032 -16.79126 -16.73320 -16.23006 -15.94665 -15.74098 -15.61537 -15.60484 -15.33608 -15.01293 -14.80583 -14.53219 -14.44391 -14.29581 -14.21632 -14.12385 -13.94794 -13.84450 -13.77714 -13.42203 -13.23502 -13.14735 -12.82090 -12.54763 -12.52365 -12.36374 -12.17348 -12.12788 -11.95308 -11.78097 -11.69992 -11.48628 -11.32961 -11.10458 -10.99859 -10.96037 -10.49866 -10.15808 -10.07839 -9.83540 -9.25181 -4.94600 -0.05236 0.23463 0.27000 1.02830 1.29781 1.50115 1.58480 1.94361 2.04360 2.10795 2.45418 2.58298 3.32820 3.40125 3.54277 3.64090 3.66522 3.68888 3.72503 3.79205 3.84824 3.91288 3.94157 4.04089 4.09347 4.12453 4.25741 4.30843 4.35781 4.39148 4.42711 4.44982 4.45514 4.47697 4.50093 4.61652 4.64853 4.68064 4.73572 4.79029 4.80787 4.92273 4.98864 5.04341 5.10155 5.11857 5.12437 5.15450 5.21650 5.22093 5.25989 5.26564 5.29802 5.41998 5.45466 5.49177 5.56378 5.65211 5.87789 6.22958 6.44172 6.60177 7.10339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.077 0.923 5 C -0.110 4.110 6 C -0.117 4.117 7 C 0.148 3.852 8 H 0.064 0.936 9 N -0.704 5.704 10 C 0.582 3.418 11 O -0.573 6.573 12 C -0.225 4.225 13 C 0.040 3.960 14 C 0.135 3.865 15 O -0.322 6.322 16 C 0.124 3.876 17 C -0.163 4.163 18 C -0.058 4.058 19 C -0.123 4.123 20 C -0.080 4.080 21 O -0.560 6.560 22 Si 0.762 3.238 23 C -0.078 4.078 24 C -0.205 4.205 25 O -0.176 6.176 26 C -0.010 4.010 27 C -0.197 4.197 28 C -0.123 4.123 29 C -0.110 4.110 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.415 0.585 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.098 0.902 45 H 0.395 0.605 46 H -0.302 1.302 47 H -0.283 1.283 48 H 0.148 0.852 49 H 0.149 0.851 50 H 0.254 0.746 51 H 0.192 0.808 52 H 0.074 0.926 53 H 0.037 0.963 54 H 0.052 0.948 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 3.016 4.558 6.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.102 4.102 4 H 0.096 0.904 5 C -0.148 4.148 6 C -0.155 4.155 7 C 0.044 3.956 8 H 0.083 0.917 9 N -0.355 5.355 10 C 0.370 3.630 11 O -0.454 6.454 12 C -0.229 4.229 13 C -0.013 4.013 14 C 0.060 3.940 15 O -0.236 6.236 16 C 0.079 3.921 17 C -0.182 4.182 18 C -0.077 4.077 19 C -0.124 4.124 20 C -0.189 4.189 21 O -0.370 6.370 22 Si 0.667 3.333 23 C -0.096 4.096 24 C -0.223 4.223 25 O -0.071 6.071 26 C -0.076 4.076 27 C -0.216 4.216 28 C -0.162 4.162 29 C -0.148 4.148 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.252 0.748 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.153 0.847 43 H 0.159 0.841 44 H 0.115 0.885 45 H 0.245 0.755 46 H -0.230 1.230 47 H -0.210 1.210 48 H 0.165 0.835 49 H 0.167 0.833 50 H 0.270 0.730 51 H 0.209 0.791 52 H 0.093 0.907 53 H 0.056 0.944 54 H 0.071 0.929 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.856 2.310 4.040 6.044 hybrid contribution -1.136 -0.520 -0.067 1.251 sum 2.720 1.790 3.973 5.137 Atomic orbital electron populations 1.21838 0.96000 1.01673 1.01853 1.21563 0.95870 0.96170 1.02112 1.21192 0.95653 0.95942 0.97431 0.90424 1.21542 0.94872 0.95621 1.02800 1.21759 1.01831 0.96325 0.95571 1.21009 0.93797 0.81105 0.99677 0.91741 1.45763 1.66638 1.14917 1.08196 1.17493 0.76597 0.84802 0.84070 1.90780 1.53980 1.68234 1.32452 1.21409 1.10753 0.96168 0.94618 1.22032 1.00387 0.83800 0.95043 1.21139 0.83828 1.02067 0.86928 1.86044 1.32779 1.78901 1.25895 1.19158 0.94733 0.95453 0.82763 1.20629 0.95083 1.05821 0.96639 1.20953 0.99442 0.95307 0.91948 1.19444 0.94651 1.02450 0.95832 1.24948 0.99179 0.97300 0.97465 1.86553 1.50730 1.64748 1.34936 0.94257 0.81359 0.82505 0.75145 1.20974 0.96206 0.97543 0.94832 1.21390 1.00635 1.05139 0.95179 1.83790 1.66152 1.32075 1.25110 1.24928 1.02325 1.01578 0.78774 1.23250 1.05593 0.93100 0.99651 1.21857 0.95264 0.97738 1.01352 1.21578 1.00891 0.94355 0.98004 0.92793 0.92447 0.92958 0.92514 0.91259 0.92343 0.90028 0.90484 0.89657 0.74828 0.87842 0.87799 0.84732 0.84114 0.88457 0.75509 1.23009 1.21020 0.83492 0.83315 0.73047 0.79095 0.90738 0.94364 0.92908 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.08 9.67 71.98 0.70 0.78 16 2 C -0.12 0.14 5.40 30.60 0.17 0.30 16 3 C -0.08 0.13 2.19 -10.80 -0.02 0.11 16 4 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 5 C -0.11 0.32 5.20 30.60 0.16 0.48 16 6 C -0.12 0.43 5.39 30.60 0.16 0.59 16 7 C 0.15 0.30 2.45 44.99 0.11 0.41 16 8 H 0.06 0.48 7.58 -2.39 -0.02 0.46 16 9 N -0.70 -1.02 5.07 -445.85 -2.26 -3.28 16 10 C 0.58 4.83 7.78 86.65 0.67 5.50 16 11 O -0.57 -9.14 14.51 -4.07 -0.06 -9.20 16 12 C -0.22 -1.17 6.31 -18.99 -0.12 -1.29 16 13 C 0.04 0.26 7.00 25.26 0.18 0.44 16 14 C 0.13 0.89 4.73 71.24 0.34 1.23 16 15 O -0.32 -3.62 10.12 -92.41 -0.94 -4.56 16 16 C 0.12 1.23 6.69 22.50 0.15 1.38 16 17 C -0.16 -1.47 9.99 22.37 0.22 -1.25 16 18 C -0.06 -0.42 9.60 22.25 0.21 -0.20 16 19 C -0.12 -0.74 5.42 -19.85 -0.11 -0.85 16 20 C -0.08 -0.15 2.81 71.23 0.20 0.05 16 21 O -0.56 -2.65 12.74 -148.98 -1.90 -4.55 16 22 Si 0.76 0.05 29.78 68.60 2.04 2.09 16 23 C -0.08 -0.39 8.66 22.26 0.19 -0.20 16 24 C -0.20 -1.31 9.04 22.37 0.20 -1.11 16 25 O -0.18 -0.58 10.52 4.54 0.05 -0.54 16 26 C -0.01 0.04 12.03 66.89 0.80 0.84 16 27 C -0.20 0.55 10.60 23.65 0.25 0.80 16 28 C -0.12 -0.41 5.50 30.61 0.17 -0.24 16 29 C -0.11 -0.20 4.96 30.61 0.15 -0.05 16 30 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.05 0.03 6.56 -2.39 -0.02 0.01 16 33 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 35 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.41 -2.07 7.77 -92.71 -0.72 -2.79 16 40 H 0.10 0.86 6.03 -2.39 -0.01 0.85 16 41 H 0.10 0.12 7.66 -2.39 -0.02 0.11 16 42 H 0.13 0.99 8.06 -2.91 -0.02 0.96 16 43 H 0.14 0.61 8.06 -2.91 -0.02 0.58 16 44 H 0.10 -0.25 7.96 -2.39 -0.02 -0.27 16 45 H 0.39 -1.47 8.74 -74.06 -0.65 -2.12 16 46 H -0.30 -2.41 7.11 99.48 0.71 -1.70 16 47 H -0.28 -1.01 7.11 99.48 0.71 -0.30 16 48 H 0.15 0.04 4.87 -2.91 -0.01 0.03 16 49 H 0.15 0.29 6.30 -2.91 -0.02 0.27 16 50 H 0.25 -3.32 8.06 -2.91 -0.02 -3.35 16 51 H 0.19 -1.92 7.74 -2.91 -0.02 -1.94 16 52 H 0.07 0.08 8.14 -2.38 -0.02 0.06 16 53 H 0.04 0.37 8.14 -2.38 -0.02 0.35 16 54 H 0.05 0.22 8.14 -2.38 -0.02 0.20 16 55 H 0.07 0.14 6.57 -2.39 -0.02 0.12 16 Total: 0.00 -24.03 438.06 1.31 -22.71 By element: Atomic # 1 Polarization: -9.97 SS G_CDS: -0.41 Total: -10.39 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 4.79 Total: 7.71 kcal Atomic # 7 Polarization: -1.02 SS G_CDS: -2.26 Total: -3.28 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -2.84 Total: -18.84 kcal Atomic # 14 Polarization: 0.05 SS G_CDS: 2.04 Total: 2.09 kcal Total: -24.03 1.31 -22.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466078_4549634.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.838 kcal (2) G-P(sol) polarization free energy of solvation -24.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds