Wall clock time and date at job start Tue Mar 9 2021 14:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47274 * 2 1 4 4 H 1.08996 * 109.47133 * 55.00296 * 3 2 1 5 5 C 1.53004 * 109.47259 * 174.99635 * 3 2 1 6 6 C 1.53001 * 109.47259 * 179.97438 * 5 3 2 7 7 C 1.53010 * 109.46987 * 300.00348 * 6 5 3 8 8 H 1.08998 * 109.46942 * 299.99981 * 7 6 5 9 9 N 1.46494 * 109.46932 * 179.97438 * 7 6 5 10 10 C 1.34774 * 120.00035 * 154.99981 * 9 7 6 11 11 O 1.21283 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00384 * 180.02562 * 10 9 7 13 13 O 1.42894 * 109.47536 * 179.97438 * 12 10 9 14 14 C 1.35897 * 117.00168 * 179.97438 * 13 12 10 15 15 C 1.38708 * 120.05417 * 180.02562 * 14 13 12 16 16 N 1.48009 * 120.03072 * 0.02562 * 15 14 13 17 17 O 1.21804 * 119.99935 * 179.97438 * 16 15 14 18 18 O 1.21798 * 119.99887 * 359.97333 * 16 15 14 19 19 C 1.38166 * 119.94492 * 179.97438 * 15 14 13 20 20 C 1.38246 * 120.05710 * 359.97438 * 19 15 14 21 21 C 1.50699 * 119.94884 * 179.97438 * 20 19 15 22 22 O 1.42907 * 109.46603 * 65.00493 * 21 20 19 23 23 Si 1.86298 * 109.47032 * 184.99796 * 21 20 19 24 24 C 1.38295 * 120.10956 * 0.27243 * 20 19 15 25 25 C 1.38128 * 120.05137 * 359.45363 * 24 20 19 26 26 C 1.53000 * 109.46915 * 59.99879 * 7 6 5 27 27 C 1.52996 * 109.47089 * 295.00071 * 3 2 1 28 28 H 1.08995 * 109.47173 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47148 * 300.00355 * 1 2 3 30 30 H 1.09007 * 109.47123 * 60.00153 * 1 2 3 31 31 H 1.08996 * 109.47529 * 240.00012 * 2 1 3 32 32 H 1.09007 * 109.47123 * 119.99847 * 2 1 3 33 33 H 1.09006 * 109.46506 * 60.00429 * 5 3 2 34 34 H 1.08995 * 109.47345 * 300.00226 * 5 3 2 35 35 H 1.08996 * 109.46888 * 180.02562 * 6 5 3 36 36 H 1.08996 * 109.46770 * 59.99973 * 6 5 3 37 37 H 0.97001 * 120.00093 * 335.00276 * 9 7 6 38 38 H 1.09005 * 109.47157 * 59.99508 * 12 10 9 39 39 H 1.09001 * 109.46707 * 300.00001 * 12 10 9 40 40 H 1.08004 * 119.97704 * 179.97438 * 19 15 14 41 41 H 1.08996 * 109.47117 * 305.00406 * 21 20 19 42 42 H 0.96697 * 114.00527 * 59.99993 * 22 21 20 43 43 H 1.48506 * 109.99834 * 58.68765 * 23 21 20 44 44 H 1.48502 * 110.00011 * 180.02562 * 23 21 20 45 45 H 1.07993 * 119.97443 * 179.72587 * 24 20 19 46 46 H 1.07997 * 120.02612 * 180.26833 * 25 24 20 47 47 H 1.08998 * 109.47232 * 60.00279 * 26 7 6 48 48 H 1.09003 * 109.47104 * 179.97438 * 26 7 6 49 49 H 1.09008 * 109.46944 * 299.99896 * 27 3 2 50 50 H 1.09002 * 109.47079 * 59.99826 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 6 4.0750 2.8868 0.1252 7 6 3.6702 3.5703 -1.1826 8 1 4.1048 3.0308 -2.0241 9 7 4.1581 4.9516 -1.1829 10 6 4.3827 5.5866 -2.3502 11 8 4.1815 5.0144 -3.4005 12 6 4.8852 7.0074 -2.3507 13 8 5.0446 7.4560 -3.6980 14 6 5.4933 8.7262 -3.8764 15 6 5.6705 9.2269 -5.1578 16 7 5.3704 8.3782 -6.3327 17 8 5.5257 8.8186 -7.4577 18 8 4.9681 7.2395 -6.1746 19 6 6.1263 10.5189 -5.3366 20 6 6.4053 11.3127 -4.2397 21 6 6.9029 12.7213 -4.4375 22 8 5.8844 13.5024 -5.0657 23 14 7.3269 13.4680 -2.7842 24 6 6.2343 10.8142 -2.9610 25 6 5.7735 9.5251 -2.7771 26 6 2.1454 3.5684 -1.3083 27 6 1.6352 2.1265 -1.3073 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9994 0.9053 -0.7161 34 1 3.8532 0.9570 1.0572 35 1 5.1613 2.8880 0.2143 36 1 3.6403 3.4262 0.9667 37 1 4.3195 5.4092 -0.3430 38 1 5.8454 7.0534 -1.8368 39 1 4.1672 7.6468 -1.8370 40 1 6.2648 10.9091 -6.3341 41 1 7.7914 12.7075 -5.0686 42 1 5.0628 13.5586 -4.5588 43 1 8.3623 12.6470 -2.1066 44 1 7.8184 14.8576 -2.9655 45 1 6.4572 11.4347 -2.1057 46 1 5.6360 9.1377 -1.7784 47 1 1.7108 4.1079 -0.4667 48 1 1.8570 4.0557 -2.2397 49 1 2.0699 1.5874 -2.1492 50 1 0.5489 2.1252 -1.3969 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466078_4549638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:12:19 Heat of formation + Delta-G solvation = -91.061296 kcal Electronic energy + Delta-G solvation = -32944.692035 eV Core-core repulsion = 28327.777024 eV Total energy + Delta-G solvation = -4616.915010 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.176 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.30633 -41.81060 -41.03249 -39.82917 -39.11708 -37.60739 -37.37537 -36.13360 -33.67983 -33.38688 -32.25971 -31.77130 -30.41526 -28.59998 -27.82571 -26.55324 -24.73217 -24.05246 -23.59232 -22.81857 -21.75262 -21.61910 -20.75959 -20.50999 -19.78668 -19.19296 -18.65261 -18.48802 -18.10781 -17.58044 -17.31073 -17.06519 -16.35535 -16.19716 -16.06126 -15.72745 -15.56642 -15.51696 -15.08686 -14.97994 -14.70324 -14.40329 -14.27534 -14.03688 -13.92584 -13.83744 -13.69627 -13.22650 -13.17916 -12.79700 -12.72217 -12.50450 -12.40043 -12.31061 -12.29120 -12.23799 -12.20641 -12.07674 -11.97556 -11.66675 -11.43932 -11.26519 -11.05461 -10.87952 -10.83883 -10.55757 -10.11992 -9.80941 -5.00448 -1.32642 -0.25112 0.14583 0.34397 1.21234 1.27165 1.46879 1.65332 2.02513 2.04470 2.33214 3.11254 3.24415 3.38814 3.51646 3.59138 3.68563 3.70806 3.71823 3.78161 3.86537 3.93198 4.00815 4.08060 4.17007 4.27480 4.34924 4.35961 4.39645 4.49084 4.50832 4.53871 4.55236 4.62876 4.70680 4.77078 4.83445 4.83489 5.02237 5.06830 5.08624 5.13704 5.15551 5.18219 5.19938 5.25910 5.30041 5.32745 5.44144 5.52018 5.59914 5.75826 6.40205 6.47851 6.73912 7.18282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.083 4.083 4 H 0.081 0.919 5 C -0.113 4.113 6 C -0.115 4.115 7 C 0.148 3.852 8 H 0.057 0.943 9 N -0.704 5.704 10 C 0.506 3.494 11 O -0.567 6.567 12 C 0.025 3.975 13 O -0.292 6.292 14 C 0.194 3.806 15 C -0.105 4.105 16 N 0.034 4.966 17 O -0.203 6.203 18 O -0.175 6.175 19 C -0.004 4.004 20 C -0.151 4.151 21 C -0.083 4.083 22 O -0.558 6.558 23 Si 0.801 3.199 24 C -0.002 4.002 25 C -0.188 4.188 26 C -0.124 4.124 27 C -0.113 4.113 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.423 0.577 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.108 0.892 42 H 0.398 0.602 43 H -0.266 1.266 44 H -0.306 1.306 45 H 0.192 0.808 46 H 0.208 0.792 47 H 0.082 0.918 48 H 0.039 0.961 49 H 0.048 0.952 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 4.498 17.009 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.101 4.101 4 H 0.099 0.901 5 C -0.151 4.151 6 C -0.153 4.153 7 C 0.043 3.957 8 H 0.075 0.925 9 N -0.359 5.359 10 C 0.291 3.709 11 O -0.444 6.444 12 C -0.052 4.052 13 O -0.203 6.203 14 C 0.144 3.856 15 C -0.191 4.191 16 N 0.544 4.456 17 O -0.411 6.411 18 O -0.388 6.388 19 C -0.024 4.024 20 C -0.152 4.152 21 C -0.191 4.191 22 O -0.366 6.366 23 Si 0.704 3.296 24 C -0.020 4.020 25 C -0.206 4.206 26 C -0.162 4.162 27 C -0.151 4.151 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.261 0.739 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.125 0.875 42 H 0.248 0.752 43 H -0.192 1.192 44 H -0.234 1.234 45 H 0.208 0.792 46 H 0.225 0.775 47 H 0.100 0.900 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.989 4.708 16.663 17.343 hybrid contribution 0.095 -0.653 -1.661 1.788 sum 1.084 4.055 15.001 15.577 Atomic orbital electron populations 1.21832 0.95944 1.01617 1.01925 1.21574 0.95930 0.96428 1.01954 1.21187 0.95603 0.95777 0.97546 0.90072 1.21560 0.94934 0.96045 1.02581 1.21746 1.01864 0.96031 0.95659 1.20969 0.93865 0.81405 0.99447 0.92492 1.45725 1.67193 1.14743 1.08197 1.20565 0.77683 0.88438 0.84172 1.90850 1.51967 1.68360 1.33271 1.23138 1.06660 0.93456 0.81923 1.86474 1.78327 1.25070 1.30380 1.18988 0.89989 0.84914 0.91745 1.20874 1.20812 0.94551 0.82822 1.43920 0.97541 1.01408 1.02749 1.94501 1.58148 1.77343 1.11076 1.94681 1.47613 1.03694 1.92845 1.20853 0.90726 0.88167 1.02609 1.20465 1.04539 0.97882 0.92334 1.25488 0.93883 0.87986 1.11723 1.86535 1.27492 1.71226 1.51358 0.93847 0.85263 0.75789 0.74676 1.21728 0.88858 0.94507 0.96879 1.21832 1.05420 0.94680 0.98697 1.21844 0.95174 0.97538 1.01676 1.21575 1.00936 0.94759 0.97837 0.92977 0.92288 0.92912 0.92791 0.91357 0.92801 0.90129 0.90441 0.89051 0.73915 0.83875 0.83602 0.83349 0.87452 0.75159 1.19223 1.23406 0.79184 0.77536 0.89970 0.94228 0.93355 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.28 9.67 71.98 0.70 0.98 16 2 C -0.12 0.28 5.40 30.59 0.17 0.45 16 3 C -0.08 0.30 2.19 -10.79 -0.02 0.28 16 4 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 5 C -0.11 0.55 5.20 30.60 0.16 0.71 16 6 C -0.12 0.84 5.39 30.60 0.16 1.00 16 7 C 0.15 -0.27 2.46 45.00 0.11 -0.16 16 8 H 0.06 0.32 7.58 -2.39 -0.02 0.30 16 9 N -0.70 4.19 5.08 -442.53 -2.25 1.94 16 10 C 0.51 0.73 7.87 87.66 0.69 1.42 16 11 O -0.57 -8.91 16.16 16.00 0.26 -8.65 16 12 C 0.03 -0.19 5.22 71.24 0.37 0.19 16 13 O -0.29 -1.35 7.68 -63.37 -0.49 -1.84 16 14 C 0.19 0.10 6.67 22.51 0.15 0.25 16 15 C -0.11 -0.77 6.87 36.47 0.25 -0.52 16 16 N 0.03 0.59 4.45 -46.24 -0.21 0.39 16 17 O -0.20 -3.93 18.45 18.88 0.35 -3.58 16 18 O -0.17 -3.91 17.24 25.61 0.44 -3.47 16 19 C 0.00 -0.01 9.19 22.25 0.20 0.19 16 20 C -0.15 0.87 5.35 -19.85 -0.11 0.76 16 21 C -0.08 0.51 2.80 71.24 0.20 0.71 16 22 O -0.56 2.01 12.83 -148.98 -1.91 0.09 16 23 Si 0.80 -8.30 29.80 68.60 2.04 -6.25 16 24 C 0.00 0.03 8.66 22.26 0.19 0.22 16 25 C -0.19 2.12 9.04 22.37 0.20 2.32 16 26 C -0.12 0.06 5.49 30.58 0.17 0.23 16 27 C -0.11 0.04 4.96 30.58 0.15 0.19 16 28 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.05 -0.04 6.57 -2.38 -0.02 -0.06 16 31 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 33 H 0.05 -0.11 8.14 -2.38 -0.02 -0.12 16 34 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 37 H 0.42 -6.39 8.60 -92.71 -0.80 -7.18 16 38 H 0.14 -2.32 7.67 -2.38 -0.02 -2.34 16 39 H 0.15 -2.42 7.66 -2.39 -0.02 -2.44 16 40 H 0.15 0.63 7.61 -2.91 -0.02 0.61 16 41 H 0.11 -0.42 7.96 -2.39 -0.02 -0.44 16 42 H 0.40 -4.99 8.70 -74.06 -0.64 -5.64 16 43 H -0.27 2.10 7.11 99.48 0.71 2.81 16 44 H -0.31 0.16 7.11 99.48 0.71 0.86 16 45 H 0.19 -3.90 4.90 -2.91 -0.01 -3.91 16 46 H 0.21 -4.47 6.30 -2.91 -0.02 -4.49 16 47 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 49 H 0.05 0.15 8.14 -2.38 -0.02 0.13 16 50 H 0.07 -0.01 6.56 -2.39 -0.02 -0.02 16 Total: 0.00 -39.02 406.14 1.57 -37.45 By element: Atomic # 1 Polarization: -24.87 SS G_CDS: -0.42 Total: -25.29 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 3.75 Total: 9.22 kcal Atomic # 7 Polarization: 4.78 SS G_CDS: -2.45 Total: 2.33 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -1.35 Total: -17.45 kcal Atomic # 14 Polarization: -8.30 SS G_CDS: 2.04 Total: -6.25 kcal Total: -39.02 1.57 -37.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466078_4549638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.609 kcal (2) G-P(sol) polarization free energy of solvation -39.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds