Wall clock time and date at job start Tue Mar 9 2021 14:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47555 * 2 1 4 4 H 1.09002 * 109.47168 * 305.00618 * 3 2 1 5 5 C 1.53002 * 109.46748 * 64.99849 * 3 2 1 6 6 C 1.53007 * 109.47118 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47079 * 300.00323 * 6 5 3 8 8 H 1.09002 * 109.47395 * 300.00081 * 7 6 5 9 9 N 1.46503 * 109.47346 * 179.97438 * 7 6 5 10 10 C 1.34779 * 119.99579 * 84.99849 * 9 7 6 11 11 O 1.21281 * 120.00098 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99893 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47194 * 179.97438 * 12 10 9 14 14 C 1.36837 * 125.06654 * 265.04155 * 13 12 10 15 15 C 1.34228 * 109.94006 * 179.97438 * 14 13 12 16 16 C 1.50705 * 126.50220 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.47119 * 254.97629 * 16 15 14 18 18 Si 1.86300 * 109.46577 * 14.97542 * 16 15 14 19 19 C 1.46491 * 106.99909 * 359.97438 * 15 14 13 20 20 C 1.39594 * 134.03489 * 179.97438 * 19 15 14 21 21 C 1.36662 * 119.76463 * 180.02562 * 20 19 15 22 22 C 1.38791 * 120.52795 * 0.02562 * 21 20 19 23 23 C 1.37791 * 120.66406 * 0.26219 * 22 21 20 24 24 C 1.37694 * 125.06094 * 85.00316 * 13 12 10 25 25 C 1.53002 * 109.47410 * 59.99856 * 7 6 5 26 26 C 1.52997 * 109.47443 * 184.99738 * 3 2 1 27 27 H 1.09007 * 109.47300 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47244 * 300.00018 * 1 2 3 29 29 H 1.09005 * 109.46898 * 59.99870 * 1 2 3 30 30 H 1.09004 * 109.46936 * 240.00140 * 2 1 3 31 31 H 1.09005 * 109.46898 * 120.00130 * 2 1 3 32 32 H 1.09000 * 109.47861 * 299.99822 * 5 3 2 33 33 H 1.09005 * 109.47383 * 60.00389 * 5 3 2 34 34 H 1.08999 * 109.47429 * 180.02562 * 6 5 3 35 35 H 1.09005 * 109.46766 * 59.99901 * 6 5 3 36 36 H 0.96991 * 120.00286 * 264.99980 * 9 7 6 37 37 H 1.09005 * 109.46717 * 60.00120 * 12 10 9 38 38 H 1.08996 * 109.46876 * 300.00242 * 12 10 9 39 39 H 1.07997 * 125.02565 * 0.02562 * 14 13 12 40 40 H 1.09003 * 109.46996 * 134.97421 * 16 15 14 41 41 H 0.96696 * 113.99944 * 59.99741 * 17 16 15 42 42 H 1.48505 * 109.99570 * 179.97438 * 18 16 15 43 43 H 1.48491 * 110.00285 * 301.31531 * 18 16 15 44 44 H 1.08005 * 120.11859 * 0.02682 * 20 19 15 45 45 H 1.08004 * 119.73468 * 180.02562 * 21 20 19 46 46 H 1.08002 * 119.66399 * 179.97438 * 22 21 20 47 47 H 1.08000 * 120.10578 * 179.72137 * 23 22 21 48 48 H 1.08998 * 109.47067 * 60.00019 * 25 7 6 49 49 H 1.09007 * 109.47288 * 180.02562 * 25 7 6 50 50 H 1.08999 * 109.47003 * 60.00597 * 26 3 2 51 51 H 1.08998 * 109.47252 * 300.00328 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 2.1448 3.5691 1.3072 7 6 3.6695 3.5715 1.1812 8 1 4.1046 3.0326 2.0229 9 7 4.1574 4.9529 1.1804 10 6 4.3820 5.5888 2.3473 11 8 4.1807 5.0173 3.3979 12 6 4.8834 7.0100 2.3465 13 7 5.0458 7.4713 3.7275 14 6 4.1110 8.1760 4.4360 15 6 4.5740 8.4405 5.6678 16 6 3.8511 9.1939 6.7546 17 8 4.4090 10.5036 6.8784 18 14 2.0441 9.3269 6.3214 19 6 5.9148 7.8570 5.7558 20 6 6.8843 7.7999 6.7586 21 6 8.0694 7.1622 6.5210 22 6 8.3174 6.5710 5.2900 23 6 7.3768 6.6207 4.2843 24 6 6.1615 7.2595 4.5061 25 6 4.0743 2.8874 -0.1262 26 6 3.5648 1.4442 -0.1257 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5489 2.1252 1.3970 33 1 2.0699 1.5874 2.1492 34 1 1.8568 4.0563 2.2387 35 1 1.7098 4.1079 0.4653 36 1 4.3188 5.4097 0.3402 37 1 4.1647 7.6485 1.8327 38 1 5.8433 7.0563 1.8323 39 1 3.1436 8.4745 4.0600 40 1 3.9600 8.6617 7.6997 41 1 4.3470 11.0352 6.0730 42 1 1.3199 10.0672 7.3857 43 1 1.8838 10.0224 5.0193 44 1 6.6984 8.2580 7.7189 45 1 8.8189 7.1179 7.2973 46 1 9.2590 6.0710 5.1172 47 1 7.5811 6.1614 3.3284 48 1 3.6394 3.4263 -0.9680 49 1 5.1607 2.8887 -0.2158 50 1 3.8532 0.9569 -1.0571 51 1 3.9994 0.9051 0.7161 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466078_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:13:09 Heat of formation + Delta-G solvation = -16.162947 kcal Electronic energy + Delta-G solvation = -30194.942843 eV Core-core repulsion = 26253.558485 eV Total energy + Delta-G solvation = -3941.384358 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.54806 -41.03252 -39.48364 -38.15915 -37.70784 -36.11217 -34.19772 -33.39856 -31.77472 -31.45912 -30.25517 -29.69978 -28.38992 -25.85099 -24.55139 -23.82666 -23.57702 -22.67079 -21.70926 -21.56725 -20.82720 -20.59682 -18.69740 -18.39902 -17.83284 -17.41611 -16.94055 -16.42026 -16.41803 -16.13551 -15.92887 -15.61147 -15.52421 -15.24333 -15.04578 -14.85132 -14.72048 -14.50066 -14.29558 -14.25441 -14.08041 -13.83289 -13.61445 -13.20518 -13.18405 -12.76758 -12.72867 -12.58061 -12.50215 -12.41073 -12.30376 -12.08264 -12.01019 -11.74508 -11.66848 -11.45370 -11.28959 -11.06072 -10.95867 -10.54686 -10.45793 -10.08825 -9.16999 -8.64259 -4.87198 0.13170 0.63160 1.34160 1.40987 1.49189 1.57329 1.68042 1.96071 2.22505 2.94156 3.52864 3.57834 3.65232 3.67777 3.70668 3.74357 3.83058 3.89378 4.02113 4.07572 4.13349 4.17057 4.21130 4.28918 4.35823 4.40005 4.48886 4.49144 4.53745 4.54838 4.58043 4.70698 4.70882 4.76806 4.78019 4.83382 4.88609 5.02390 5.08390 5.12824 5.13347 5.15417 5.19591 5.25776 5.29648 5.32937 5.45604 5.49932 5.52722 5.59462 5.65474 5.72802 5.74357 6.18342 6.22895 6.50912 6.59862 7.17952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.084 4.084 4 H 0.078 0.922 5 C -0.112 4.112 6 C -0.121 4.121 7 C 0.149 3.851 8 H 0.057 0.943 9 N -0.709 5.709 10 C 0.491 3.509 11 O -0.568 6.568 12 C 0.087 3.913 13 N -0.465 5.465 14 C 0.074 3.926 15 C -0.215 4.215 16 C -0.050 4.050 17 O -0.553 6.553 18 Si 0.763 3.237 19 C -0.116 4.116 20 C -0.088 4.088 21 C -0.154 4.154 22 C -0.107 4.107 23 C -0.135 4.135 24 C 0.091 3.909 25 C -0.117 4.117 26 C -0.112 4.112 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.419 0.581 37 H 0.160 0.840 38 H 0.142 0.858 39 H 0.196 0.804 40 H 0.103 0.897 41 H 0.384 0.616 42 H -0.301 1.301 43 H -0.259 1.259 44 H 0.119 0.881 45 H 0.137 0.863 46 H 0.145 0.855 47 H 0.132 0.868 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 -1.375 -9.678 9.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.102 4.102 4 H 0.097 0.903 5 C -0.150 4.150 6 C -0.160 4.160 7 C 0.044 3.956 8 H 0.075 0.925 9 N -0.362 5.362 10 C 0.277 3.723 11 O -0.446 6.446 12 C -0.037 4.037 13 N -0.148 5.148 14 C -0.052 4.052 15 C -0.222 4.222 16 C -0.159 4.159 17 O -0.360 6.360 18 Si 0.666 3.334 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.173 4.173 22 C -0.126 4.126 23 C -0.155 4.155 24 C -0.014 4.014 25 C -0.155 4.155 26 C -0.150 4.150 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.257 0.743 37 H 0.178 0.822 38 H 0.160 0.840 39 H 0.213 0.787 40 H 0.121 0.879 41 H 0.233 0.767 42 H -0.229 1.229 43 H -0.184 1.184 44 H 0.137 0.863 45 H 0.154 0.846 46 H 0.163 0.837 47 H 0.150 0.850 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.096 0.904 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.004 -1.556 -8.843 9.200 hybrid contribution 0.837 0.868 -0.138 1.214 sum -1.167 -0.688 -8.982 9.083 Atomic orbital electron populations 1.21833 0.95878 1.01637 1.01959 1.21570 0.95978 0.96392 1.01923 1.21189 0.95468 0.95826 0.97722 0.90338 1.21574 1.00990 0.94779 0.97627 1.21833 0.94967 0.97445 1.01766 1.20925 0.93988 0.81619 0.99041 0.92452 1.45924 1.66955 1.14735 1.08620 1.21388 0.77490 0.89419 0.84040 1.90802 1.52490 1.68338 1.32926 1.21972 1.07450 0.92748 0.81533 1.43431 1.12704 1.46669 1.11981 1.22001 0.95052 0.96619 0.91502 1.20701 0.95561 1.09362 0.96597 1.24573 1.08560 0.82985 0.99748 1.86560 1.82412 1.25904 1.41163 0.94042 0.72969 0.88842 0.77543 1.19342 0.95743 1.02728 0.94217 1.20457 0.93132 0.98892 0.98163 1.20922 0.97628 1.00370 0.98354 1.21135 0.99488 0.99326 0.92676 1.20247 0.91668 1.02550 1.01028 1.18401 0.90102 1.01564 0.91332 1.21760 1.01659 0.96133 0.95970 1.21557 0.95060 0.95953 1.02474 0.92968 0.92708 0.92419 0.91568 0.92656 0.91310 0.93199 0.93651 0.90353 0.74344 0.82205 0.84044 0.78695 0.87877 0.76746 1.22850 1.18439 0.86303 0.84551 0.83684 0.84992 0.89477 0.90772 0.90444 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.39 9.67 71.98 0.70 1.08 16 2 C -0.12 0.34 5.40 30.59 0.17 0.51 16 3 C -0.08 0.34 2.19 -10.80 -0.02 0.32 16 4 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 5 C -0.11 0.19 4.96 30.60 0.15 0.34 16 6 C -0.12 0.25 5.49 30.59 0.17 0.42 16 7 C 0.15 -0.42 2.45 44.99 0.11 -0.31 16 8 H 0.06 0.23 7.58 -2.39 -0.02 0.22 16 9 N -0.71 4.51 5.08 -442.52 -2.25 2.26 16 10 C 0.49 -0.32 7.86 87.66 0.69 0.37 16 11 O -0.57 -6.16 16.09 -3.03 -0.05 -6.21 16 12 C 0.09 -0.57 6.48 85.63 0.56 -0.02 16 13 N -0.47 -1.06 2.27 -520.00 -1.18 -2.24 16 14 C 0.07 0.14 9.89 83.00 0.82 0.96 16 15 C -0.21 -1.35 5.58 -18.63 -0.10 -1.45 16 16 C -0.05 -0.24 3.06 71.24 0.22 -0.02 16 17 O -0.55 -3.87 12.88 -148.98 -1.92 -5.79 16 18 Si 0.76 0.14 30.82 68.60 2.11 2.25 16 19 C -0.12 -1.21 6.35 -20.20 -0.13 -1.34 16 20 C -0.09 -0.88 10.05 22.23 0.22 -0.66 16 21 C -0.15 -1.09 9.97 22.03 0.22 -0.87 16 22 C -0.11 -0.58 10.01 22.30 0.22 -0.35 16 23 C -0.13 -0.78 10.00 22.37 0.22 -0.56 16 24 C 0.09 0.71 6.80 39.03 0.27 0.98 16 25 C -0.12 0.82 5.39 30.61 0.17 0.98 16 26 C -0.11 0.55 5.21 30.61 0.16 0.71 16 27 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 28 H 0.05 -0.11 6.56 -2.39 -0.02 -0.12 16 29 H 0.06 -0.18 8.14 -2.38 -0.02 -0.20 16 30 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 31 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 32 H 0.07 -0.11 6.57 -2.39 -0.02 -0.13 16 33 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 34 H 0.04 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.08 -0.38 8.14 -2.38 -0.02 -0.40 16 36 H 0.42 -5.76 8.60 -92.71 -0.80 -6.55 16 37 H 0.16 -2.30 8.12 -2.38 -0.02 -2.32 16 38 H 0.14 -1.60 8.14 -2.39 -0.02 -1.62 16 39 H 0.20 -0.94 6.27 -2.91 -0.02 -0.96 16 40 H 0.10 0.59 7.96 -2.39 -0.02 0.58 16 41 H 0.38 0.12 8.70 -74.06 -0.64 -0.52 16 42 H -0.30 -2.32 7.11 99.48 0.71 -1.61 16 43 H -0.26 -0.01 7.00 99.48 0.70 0.69 16 44 H 0.12 1.07 8.06 -2.91 -0.02 1.05 16 45 H 0.14 0.40 8.06 -2.91 -0.02 0.37 16 46 H 0.15 0.03 8.06 -2.91 -0.02 0.00 16 47 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 48 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 49 H 0.07 -0.54 8.14 -2.38 -0.02 -0.56 16 50 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 51 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 Total: 0.00 -23.88 406.49 1.03 -22.85 By element: Atomic # 1 Polarization: -13.74 SS G_CDS: -0.49 Total: -14.23 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 4.80 Total: 1.10 kcal Atomic # 7 Polarization: 3.45 SS G_CDS: -3.43 Total: 0.02 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -1.97 Total: -12.00 kcal Atomic # 14 Polarization: 0.14 SS G_CDS: 2.11 Total: 2.25 kcal Total: -23.88 1.03 -22.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466078_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.688 kcal (2) G-P(sol) polarization free energy of solvation -23.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds