Wall clock time and date at job start Tue Mar 9 2021 12:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.47218 * 2 1 4 4 C 1.50700 * 109.47136 * 119.99834 * 2 1 3 5 5 C 1.34455 * 126.48532 * 255.02661 * 4 2 1 6 6 N 1.36553 * 109.98523 * 179.97438 * 5 4 2 7 7 C 1.37825 * 109.86326 * 0.02562 * 6 5 4 8 8 C 1.38651 * 133.38450 * 180.35469 * 7 6 5 9 9 C 1.39320 * 119.66604 * 180.17166 * 8 7 6 10 10 C 1.47583 * 119.82664 * 179.72756 * 9 8 7 11 11 O 1.21589 * 120.00571 * 359.72901 * 10 9 8 12 12 N 1.34783 * 119.99396 * 179.72691 * 10 9 8 13 13 C 1.46502 * 119.99683 * 179.97438 * 12 10 9 14 14 H 1.09007 * 112.90475 * 23.75266 * 13 12 10 15 15 C 1.53779 * 113.61301 * 154.99921 * 13 12 10 16 16 C 1.53787 * 87.07963 * 89.11687 * 15 13 12 17 17 H 1.08994 * 113.61447 * 270.88515 * 16 15 13 18 18 C 1.50702 * 113.61150 * 139.98062 * 16 15 13 19 19 C 1.38247 * 119.97271 * 299.72778 * 18 16 15 20 20 C 1.38202 * 120.02096 * 179.73142 * 19 18 16 21 21 C 1.38462 * 119.97431 * 0.52104 * 20 19 18 22 22 F 1.35104 * 120.02434 * 179.72821 * 21 20 19 23 23 C 1.38459 * 119.94749 * 359.75169 * 21 20 19 24 24 C 1.38192 * 119.97427 * 0.02562 * 23 21 20 25 25 C 1.53779 * 113.61564 * 252.49989 * 13 12 10 26 26 C 1.40196 * 120.33862 * 359.45261 * 9 8 7 27 27 C 1.36232 * 120.37509 * 0.25216 * 26 9 8 28 28 C 1.39873 * 119.96218 * 0.02562 * 27 26 9 29 29 H 0.96705 * 113.99489 * 60.00073 * 1 2 3 30 30 H 1.09002 * 109.47543 * 240.00490 * 2 1 3 31 31 H 1.48507 * 109.99869 * 298.68090 * 3 2 1 32 32 H 1.48502 * 109.99888 * 59.99450 * 3 2 1 33 33 H 1.07997 * 125.00203 * 359.97438 * 5 4 2 34 34 H 0.97000 * 125.06784 * 179.97438 * 6 5 4 35 35 H 1.08003 * 120.16679 * 359.90191 * 8 7 6 36 36 H 0.96996 * 119.99920 * 0.02562 * 12 10 9 37 37 H 1.08997 * 113.61646 * 334.57319 * 15 13 12 38 38 H 1.09000 * 113.61527 * 203.66590 * 15 13 12 39 39 H 1.07993 * 119.99225 * 359.97438 * 19 18 16 40 40 H 1.07999 * 120.00942 * 180.25206 * 20 19 18 41 41 H 1.07997 * 120.00860 * 180.02562 * 23 21 20 42 42 H 1.08000 * 119.98472 * 180.02562 * 24 23 21 43 43 H 1.09002 * 113.61557 * 156.33711 * 25 13 12 44 44 H 1.09004 * 113.61501 * 25.43131 * 25 13 12 45 45 H 1.07998 * 119.81426 * 180.27449 * 26 9 8 46 46 H 1.08006 * 120.01990 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.4612 -0.1363 2.3248 6 7 2.8026 -1.0946 3.2357 7 6 2.4946 -2.3431 2.7397 8 6 2.6253 -3.6275 3.2452 9 6 2.2135 -4.7155 2.4786 10 6 2.3565 -6.0846 3.0107 11 8 2.8373 -6.2612 4.1134 12 7 1.9542 -7.1392 2.2742 13 6 2.0967 -8.4983 2.8021 14 1 2.1379 -8.5284 3.8910 15 6 1.1022 -9.5022 2.1954 16 6 2.1513 -9.7601 1.1010 17 1 2.0603 -9.0939 0.2432 18 6 2.2694 -11.2101 0.7077 19 6 2.6292 -12.1545 1.6510 20 6 2.7324 -13.4853 1.2927 21 6 2.4857 -13.8710 -0.0140 22 9 2.5917 -15.1709 -0.3666 23 6 2.1310 -12.9234 -0.9591 24 6 2.0240 -11.5939 -0.5975 25 6 3.2109 -9.3102 2.1208 26 6 1.6586 -4.5160 1.2066 27 6 1.5209 -3.2569 0.7048 28 6 1.9350 -2.1548 1.4600 29 1 -0.3933 0.4417 -0.7651 30 1 1.7924 -0.5137 -0.8900 31 1 1.5879 2.4586 -1.2243 32 1 1.5614 2.4679 1.2084 33 1 2.5967 0.9262 2.4629 34 1 3.2030 -0.9224 4.1022 35 1 3.0483 -3.7841 4.2265 36 1 1.5709 -6.9983 1.3943 37 1 0.1877 -9.0403 1.8234 38 1 0.9125 -10.3672 2.8310 39 1 2.8259 -11.8529 2.6692 40 1 3.0095 -14.2235 2.0308 41 1 1.9380 -13.2232 -1.9786 42 1 1.7469 -10.8547 -1.3345 43 1 3.5976 -10.1227 2.7359 44 1 3.9987 -8.6933 1.6884 45 1 1.3381 -5.3652 0.6214 46 1 1.0923 -3.1098 -0.2756 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466350_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:12 Heat of formation + Delta-G solvation = 8.482114 kcal Electronic energy + Delta-G solvation = -30746.943785 eV Core-core repulsion = 26290.882437 eV Total energy + Delta-G solvation = -4456.061348 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.90650 -42.44969 -41.56822 -40.36718 -38.73353 -37.86284 -37.49552 -34.59513 -33.34585 -32.10917 -31.55988 -30.76316 -30.33608 -26.66972 -26.55307 -26.12130 -24.68505 -23.97105 -23.62575 -22.56958 -21.61629 -20.59447 -20.17388 -19.30739 -18.73087 -18.42861 -18.20675 -17.45719 -17.30039 -17.14792 -16.64404 -16.60979 -16.09674 -15.97061 -15.82671 -15.47712 -15.29875 -15.05973 -14.99720 -14.76308 -14.69105 -14.45712 -14.42214 -14.17067 -13.93250 -13.82250 -13.62971 -13.40618 -13.14824 -12.92772 -12.63984 -12.57585 -12.17582 -12.17458 -11.86267 -11.82850 -11.64598 -11.20704 -11.10862 -10.76042 -10.32147 -10.13736 -10.04514 -9.46859 -9.34837 -8.78552 -4.84488 -0.30999 0.13753 0.28632 0.39464 1.36279 1.40276 1.66135 1.88265 1.90871 2.02150 2.24958 2.57415 2.87759 3.31545 3.47977 3.57325 3.60434 3.68320 3.72750 3.75481 3.83899 3.85187 3.97485 3.99749 4.05952 4.12028 4.23333 4.30607 4.34357 4.38892 4.43911 4.52586 4.60328 4.67188 4.79479 4.80571 4.89306 4.91999 4.99401 5.04351 5.06507 5.07449 5.16440 5.20699 5.23861 5.30317 5.42890 5.48802 5.55560 5.62704 5.67948 5.94113 5.99505 6.48648 6.52757 6.71629 7.16069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.049 4.049 3 Si 0.767 3.233 4 C -0.190 4.190 5 C 0.087 3.913 6 N -0.578 5.578 7 C 0.066 3.934 8 C -0.067 4.067 9 C -0.135 4.135 10 C 0.565 3.435 11 O -0.581 6.581 12 N -0.693 5.693 13 C 0.113 3.887 14 H 0.086 0.914 15 C -0.125 4.125 16 C -0.063 4.063 17 H 0.118 0.882 18 C -0.080 4.080 19 C -0.091 4.091 20 C -0.160 4.160 21 C 0.064 3.936 22 F -0.156 7.156 23 C -0.160 4.160 24 C -0.087 4.087 25 C -0.143 4.143 26 C -0.106 4.106 27 C -0.082 4.082 28 C -0.081 4.081 29 H 0.391 0.609 30 H 0.085 0.915 31 H -0.290 1.290 32 H -0.288 1.288 33 H 0.202 0.798 34 H 0.434 0.566 35 H 0.128 0.872 36 H 0.416 0.584 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.156 0.844 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.156 0.844 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 4.813 -4.050 6.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.158 4.158 3 Si 0.671 3.329 4 C -0.197 4.197 5 C -0.042 4.042 6 N -0.181 5.181 7 C -0.040 4.040 8 C -0.089 4.089 9 C -0.140 4.140 10 C 0.354 3.646 11 O -0.463 6.463 12 N -0.345 5.345 13 C 0.007 3.993 14 H 0.104 0.896 15 C -0.163 4.163 16 C -0.081 4.081 17 H 0.136 0.864 18 C -0.081 4.081 19 C -0.109 4.109 20 C -0.179 4.179 21 C 0.045 3.955 22 F -0.135 7.135 23 C -0.178 4.178 24 C -0.105 4.105 25 C -0.182 4.182 26 C -0.125 4.125 27 C -0.100 4.100 28 C -0.086 4.086 29 H 0.241 0.759 30 H 0.103 0.897 31 H -0.217 1.217 32 H -0.215 1.215 33 H 0.219 0.781 34 H 0.275 0.725 35 H 0.146 0.854 36 H 0.254 0.746 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.174 0.826 43 H 0.117 0.883 44 H 0.088 0.912 45 H 0.173 0.827 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.981 5.165 -2.617 5.873 hybrid contribution -1.030 -0.555 -0.375 1.228 sum -0.049 4.610 -2.992 5.496 Atomic orbital electron populations 1.86595 1.19233 1.80583 1.50733 1.24292 0.83320 1.11168 0.97019 0.94234 0.90073 0.71549 0.76996 1.19799 1.10612 0.91172 0.98104 1.22190 0.98362 0.95424 0.88245 1.41763 1.54338 1.03350 1.18631 1.18144 1.03977 0.86790 0.95112 1.20136 0.99955 0.88729 1.00060 1.19458 1.06151 0.91649 0.96724 1.18348 0.76792 0.85349 0.84118 1.90768 1.46571 1.86785 1.22128 1.45439 1.63164 1.04803 1.21087 1.21895 0.97816 0.80675 0.98911 0.89575 1.23399 0.97270 0.98615 0.97040 1.21608 0.96834 0.91712 0.97963 0.86417 1.19955 0.98923 0.95805 0.93376 1.21123 0.97796 0.91112 1.00867 1.21357 1.03336 0.98414 0.94766 1.18130 1.04201 0.78158 0.95029 1.91471 1.94048 1.35199 1.92795 1.21394 1.02758 0.93542 1.00134 1.21229 0.97751 0.95017 0.96524 1.23582 0.96822 0.99853 0.97928 1.20916 0.99459 0.98136 0.94014 1.20418 0.98870 0.90507 1.00241 1.19563 1.01036 0.94065 0.93983 0.75922 0.89686 1.21729 1.21474 0.78114 0.72550 0.85368 0.74574 0.89223 0.87943 0.83340 0.84099 0.83874 0.82643 0.88278 0.91240 0.82653 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.88 12.86 -148.98 -1.92 -2.80 16 2 C -0.05 0.08 3.05 71.24 0.22 0.30 16 3 Si 0.77 -3.55 30.79 68.60 2.11 -1.44 16 4 C -0.19 -0.29 5.60 -18.64 -0.10 -0.40 16 5 C 0.09 -0.17 10.43 83.09 0.87 0.70 16 6 N -0.58 0.76 6.06 -187.72 -1.14 -0.38 16 7 C 0.07 0.26 7.26 38.96 0.28 0.55 16 8 C -0.07 -0.37 9.61 22.63 0.22 -0.16 16 9 C -0.14 -0.55 5.87 -20.08 -0.12 -0.67 16 10 C 0.56 3.35 7.76 86.71 0.67 4.02 16 11 O -0.58 -8.27 15.91 -4.00 -0.06 -8.34 16 12 N -0.69 1.10 5.21 -443.14 -2.31 -1.21 16 13 C 0.11 -0.22 4.32 45.52 0.20 -0.02 16 14 H 0.09 0.24 7.47 -2.38 -0.02 0.22 16 15 C -0.13 0.80 7.29 31.12 0.23 1.03 16 16 C -0.06 0.42 3.86 -11.01 -0.04 0.37 16 17 H 0.12 -1.16 8.09 -2.39 -0.02 -1.18 16 18 C -0.08 0.26 5.29 -19.86 -0.11 0.16 16 19 C -0.09 0.17 8.62 22.26 0.19 0.37 16 20 C -0.16 -0.23 10.03 22.31 0.22 -0.01 16 21 C 0.06 0.28 7.30 22.38 0.16 0.44 16 22 F -0.16 -1.28 17.27 44.97 0.78 -0.50 16 23 C -0.16 -0.13 10.03 22.31 0.22 0.10 16 24 C -0.09 0.25 9.71 22.26 0.22 0.47 16 25 C -0.14 0.52 7.25 31.12 0.23 0.75 16 26 C -0.11 0.08 9.46 22.28 0.21 0.29 16 27 C -0.08 -0.10 10.03 22.20 0.22 0.12 16 28 C -0.08 -0.34 6.35 -20.14 -0.13 -0.46 16 29 H 0.39 -2.52 8.74 -74.05 -0.65 -3.17 16 30 H 0.09 -0.40 7.96 -2.39 -0.02 -0.42 16 31 H -0.29 -0.11 7.11 99.48 0.71 0.60 16 32 H -0.29 -0.23 7.04 99.48 0.70 0.47 16 33 H 0.20 -1.63 6.30 -2.91 -0.02 -1.65 16 34 H 0.43 -3.04 8.96 -92.71 -0.83 -3.87 16 35 H 0.13 0.78 7.62 -2.91 -0.02 0.76 16 36 H 0.42 -3.22 6.69 -92.71 -0.62 -3.84 16 37 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.10 -0.66 7.73 -2.39 -0.02 -0.68 16 39 H 0.15 -0.82 6.64 -2.91 -0.02 -0.84 16 40 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 41 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.16 -1.25 8.05 -2.91 -0.02 -1.28 16 43 H 0.10 -0.42 6.29 -2.39 -0.02 -0.43 16 44 H 0.07 -0.12 8.14 -2.39 -0.02 -0.13 16 45 H 0.16 -1.27 6.36 -2.91 -0.02 -1.28 16 46 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 Total: 0.00 -25.25 388.75 0.33 -24.92 By element: Atomic # 1 Polarization: -17.20 SS G_CDS: -0.99 Total: -18.19 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 3.86 Total: 7.94 kcal Atomic # 7 Polarization: 1.86 SS G_CDS: -3.45 Total: -1.59 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.98 Total: -11.14 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.78 Total: -0.50 kcal Atomic # 14 Polarization: -3.55 SS G_CDS: 2.11 Total: -1.44 kcal Total: -25.25 0.33 -24.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466350_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.401 kcal (2) G-P(sol) polarization free energy of solvation -25.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds