Wall clock time and date at job start Tue Mar 9 2021 12:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37782 * 119.85043 * 2 1 4 4 C 1.39709 * 119.90703 * 179.69757 * 3 2 1 5 5 C 1.47538 * 120.19040 * 180.30209 * 4 3 2 6 6 O 1.21591 * 119.99589 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00302 * 0.02562 * 5 4 3 8 8 C 1.46495 * 120.00101 * 179.97438 * 7 5 4 9 9 H 1.09001 * 112.84945 * 23.81027 * 8 7 5 10 10 C 1.53783 * 113.61218 * 155.00434 * 8 7 5 11 11 C 1.53777 * 87.08289 * 89.11587 * 10 8 7 12 12 H 1.08992 * 113.61340 * 270.88532 * 11 10 8 13 13 C 1.50699 * 113.61333 * 140.06035 * 11 10 8 14 14 C 1.38247 * 119.98104 * 299.72632 * 13 11 10 15 15 C 1.38195 * 120.02629 * 179.76732 * 14 13 11 16 16 C 1.38461 * 119.97481 * 0.50670 * 15 14 13 17 17 F 1.35100 * 120.02407 * 179.76625 * 16 15 14 18 18 C 1.38461 * 119.94775 * 359.75039 * 16 15 14 19 19 C 1.38188 * 119.97404 * 359.97438 * 18 16 15 20 20 C 1.53782 * 113.61657 * 252.49974 * 8 7 5 21 21 C 1.40133 * 119.61658 * 0.28656 * 4 3 2 22 22 O 1.35660 * 120.15161 * 179.97438 * 21 4 3 23 23 C 1.38710 * 119.70194 * 359.97438 * 21 4 3 24 24 C 1.50702 * 119.95959 * 180.02562 * 23 21 4 25 25 O 1.42903 * 109.47187 * 285.00352 * 24 23 21 26 26 Si 1.86290 * 109.47198 * 165.00353 * 24 23 21 27 27 C 1.38053 * 120.08112 * 0.02894 * 23 21 4 28 28 H 1.08991 * 109.46930 * 89.99696 * 1 2 3 29 29 H 1.08999 * 109.46951 * 209.99808 * 1 2 3 30 30 H 1.09002 * 109.46645 * 329.99713 * 1 2 3 31 31 H 1.08002 * 120.04937 * 359.97438 * 3 2 1 32 32 H 0.96999 * 119.99617 * 0.02562 * 7 5 4 33 33 H 1.09008 * 113.61152 * 203.66483 * 10 8 7 34 34 H 1.08997 * 113.61427 * 334.47742 * 10 8 7 35 35 H 1.08005 * 119.98216 * 0.02562 * 14 13 11 36 36 H 1.07997 * 120.01119 * 180.25630 * 15 14 13 37 37 H 1.07996 * 120.00831 * 180.02562 * 18 16 15 38 38 H 1.08008 * 119.98593 * 179.97438 * 19 18 16 39 39 H 1.08999 * 113.61069 * 25.43245 * 20 8 7 40 40 H 1.09002 * 113.61560 * 156.33578 * 20 8 7 41 41 H 0.96695 * 113.99619 * 89.99571 * 22 21 4 42 42 H 1.09000 * 109.46936 * 44.99927 * 24 23 21 43 43 H 0.96703 * 113.99942 * 300.00006 * 25 24 23 44 44 H 1.48496 * 110.00387 * 58.67840 * 26 24 23 45 45 H 1.48499 * 110.00118 * 180.02562 * 26 24 23 46 46 H 1.08000 * 119.80301 * 179.97438 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1950 0.0000 4 6 3.5899 1.1964 0.0064 5 6 4.3306 2.4724 0.0132 6 8 5.5464 2.4695 0.0182 7 7 3.6595 3.6412 0.0137 8 6 4.3949 4.9081 0.0210 9 1 5.4040 4.8141 -0.3802 10 6 3.6024 6.0838 -0.5744 11 6 3.0569 6.3310 0.8419 12 1 2.1439 5.7773 1.0609 13 6 2.9575 7.7904 1.2044 14 6 4.0932 8.5787 1.2140 15 6 4.0024 9.9182 1.5415 16 6 2.7751 10.4683 1.8704 17 9 2.6860 11.7766 2.1954 18 6 1.6392 9.6766 1.8656 19 6 1.7315 8.3387 1.5322 20 6 4.3316 5.6495 1.3668 21 6 4.2837 -0.0211 0.0067 22 8 5.6402 -0.0325 0.0123 23 6 3.5771 -1.2148 0.0011 24 6 4.3172 -2.5275 0.0020 25 8 4.8610 -2.7686 -1.2974 26 14 3.1424 -3.9025 0.4485 27 6 2.1966 -1.2017 -0.0052 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6512 2.1294 -0.0004 32 1 2.6895 3.6434 0.0100 33 1 4.2329 6.8914 -0.9466 34 1 2.8396 5.7781 -1.2905 35 1 5.0510 8.1484 0.9613 36 1 4.8891 10.5347 1.5449 37 1 0.6813 10.1048 2.1216 38 1 0.8456 7.7209 1.5289 39 1 4.1564 4.9929 2.2191 40 1 5.1614 6.3383 1.5254 41 1 6.0297 -0.0376 0.8973 42 1 5.1253 -2.4885 0.7324 43 1 4.1971 -2.8158 -1.9990 44 1 2.0190 -3.9459 -0.5217 45 1 3.8603 -5.2025 0.4534 46 1 1.6510 -2.1337 -0.0099 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466350_13422088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:19 Heat of formation + Delta-G solvation = -70.712891 kcal Electronic energy + Delta-G solvation = -30787.042177 eV Core-core repulsion = 26330.742676 eV Total energy + Delta-G solvation = -4456.299501 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.141 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.91381 -41.92151 -41.15025 -39.92439 -38.60824 -38.01508 -37.74010 -34.70532 -33.05406 -32.72961 -32.11452 -31.15620 -27.52729 -26.81203 -26.69065 -26.35759 -24.91996 -24.00623 -22.63812 -21.98715 -21.62452 -20.23650 -19.61011 -18.78573 -18.47592 -17.97911 -17.49002 -17.34181 -16.92643 -16.80250 -16.61872 -16.46705 -16.05399 -15.93842 -15.75171 -15.39593 -15.37180 -14.89282 -14.71001 -14.46742 -14.42429 -14.21652 -14.15693 -13.91420 -13.65320 -13.56485 -13.43432 -13.34179 -12.92414 -12.87387 -12.50923 -12.24430 -12.18941 -11.86429 -11.80771 -11.71187 -11.66012 -11.22534 -11.02613 -10.53384 -10.25677 -10.07006 -9.99203 -9.49535 -9.47062 -4.95109 -0.33857 0.09139 0.12812 0.27852 1.25257 1.55040 1.71316 1.93173 2.03320 2.55461 2.57755 3.18133 3.30839 3.34787 3.46297 3.52909 3.60338 3.66749 3.73092 3.79120 3.83496 3.96675 3.98069 4.13104 4.18291 4.22987 4.33389 4.38211 4.43111 4.51916 4.63911 4.65839 4.78248 4.82424 4.86266 4.90873 4.91466 4.99289 5.02455 5.05282 5.05949 5.14513 5.19396 5.21076 5.26787 5.29406 5.44194 5.50674 5.66166 5.69917 5.93308 6.46478 6.46801 6.75002 7.16957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.059 4.059 4 C -0.180 4.180 5 C 0.558 3.442 6 O -0.564 6.564 7 N -0.695 5.695 8 C 0.113 3.887 9 H 0.081 0.919 10 C -0.126 4.126 11 C -0.061 4.061 12 H 0.120 0.880 13 C -0.081 4.081 14 C -0.092 4.092 15 C -0.161 4.161 16 C 0.064 3.936 17 F -0.156 7.156 18 C -0.159 4.159 19 C -0.086 4.086 20 C -0.142 4.142 21 C 0.164 3.836 22 O -0.492 6.492 23 C -0.154 4.154 24 C -0.085 4.085 25 O -0.547 6.547 26 Si 0.784 3.216 27 C -0.080 4.080 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.162 0.838 32 H 0.414 0.586 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.402 0.598 42 H 0.114 0.886 43 H 0.383 0.617 44 H -0.267 1.267 45 H -0.306 1.306 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 -1.442 2.619 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.078 4.078 4 C -0.184 4.184 5 C 0.346 3.654 6 O -0.443 6.443 7 N -0.347 5.347 8 C 0.008 3.992 9 H 0.100 0.900 10 C -0.164 4.164 11 C -0.079 4.079 12 H 0.138 0.862 13 C -0.081 4.081 14 C -0.110 4.110 15 C -0.180 4.180 16 C 0.045 3.955 17 F -0.135 7.135 18 C -0.178 4.178 19 C -0.104 4.104 20 C -0.181 4.181 21 C 0.118 3.882 22 O -0.304 6.304 23 C -0.155 4.155 24 C -0.192 4.192 25 O -0.355 6.355 26 Si 0.688 3.312 27 C -0.098 4.098 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.175 0.825 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.261 0.739 42 H 0.132 0.868 43 H 0.232 0.768 44 H -0.193 1.193 45 H -0.234 1.234 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.316 -2.085 2.114 8.830 hybrid contribution 0.500 0.795 -0.654 1.144 sum -7.816 -1.291 1.460 8.055 Atomic orbital electron populations 1.20926 0.88031 1.04867 1.03601 1.20109 0.98082 0.91737 0.99461 1.21433 0.90898 0.99906 0.95521 1.20400 0.95074 0.92446 1.10460 1.18321 0.86890 0.84369 0.75788 1.90816 1.15076 1.87877 1.50537 1.45432 1.10658 1.04103 1.74555 1.21863 0.96703 0.82704 0.97956 0.90032 1.23400 0.99985 0.96740 0.96297 1.21590 0.99345 0.90701 0.96225 0.86186 1.19958 0.92984 0.96085 0.99098 1.21115 0.99808 0.92049 0.98000 1.21351 0.96685 0.97196 1.02726 1.18134 0.96076 0.78214 1.03074 1.91471 1.97181 1.34285 1.90580 1.21403 0.98017 0.95193 1.03184 1.21238 0.98604 0.93730 0.96812 1.23565 0.98326 0.99054 0.97115 1.18557 0.83485 0.90858 0.95323 1.84768 1.15510 1.96068 1.34101 1.20639 0.94608 0.95012 1.05271 1.25305 1.05880 1.00166 0.87863 1.86642 1.38017 1.93556 1.17310 0.94081 0.75539 0.73146 0.88471 1.21411 0.92211 0.99785 0.96371 0.90239 0.89960 0.89453 0.82108 0.74724 0.88173 0.89192 0.83517 0.84199 0.83795 0.82452 0.91088 0.88495 0.73876 0.86823 0.76810 1.19328 1.23425 0.82978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.32 10.00 71.24 0.71 2.03 16 2 C -0.09 0.57 5.87 -19.90 -0.12 0.45 16 3 C -0.06 0.31 9.18 22.52 0.21 0.51 16 4 C -0.18 -0.38 5.89 -20.01 -0.12 -0.50 16 5 C 0.56 2.88 7.76 86.70 0.67 3.56 16 6 O -0.56 -8.05 14.76 16.92 0.25 -7.80 16 7 N -0.69 1.95 5.21 -443.20 -2.31 -0.36 16 8 C 0.11 -0.28 4.32 45.52 0.20 -0.08 16 9 H 0.08 0.26 7.46 -2.39 -0.02 0.24 16 10 C -0.13 0.88 7.29 31.12 0.23 1.11 16 11 C -0.06 0.47 3.85 -11.01 -0.04 0.43 16 12 H 0.12 -1.39 8.09 -2.39 -0.02 -1.41 16 13 C -0.08 0.33 5.29 -19.86 -0.11 0.23 16 14 C -0.09 0.21 8.62 22.26 0.19 0.41 16 15 C -0.16 -0.17 10.03 22.31 0.22 0.05 16 16 C 0.06 0.24 7.30 22.38 0.16 0.41 16 17 F -0.16 -1.20 17.27 44.97 0.78 -0.42 16 18 C -0.16 0.01 10.03 22.31 0.22 0.24 16 19 C -0.09 0.34 9.71 22.26 0.22 0.56 16 20 C -0.14 0.64 7.25 31.12 0.23 0.87 16 21 C 0.16 0.82 6.69 22.84 0.15 0.97 16 22 O -0.49 -4.48 10.91 -68.84 -0.75 -5.23 16 23 C -0.15 -0.08 5.27 -19.80 -0.10 -0.19 16 24 C -0.08 -0.07 2.38 71.24 0.17 0.10 16 25 O -0.55 -3.30 12.88 -148.98 -1.92 -5.22 16 26 Si 0.78 -2.68 30.24 68.60 2.07 -0.61 16 27 C -0.08 0.32 8.30 22.30 0.19 0.51 16 28 H 0.08 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H 0.08 -1.02 8.08 -2.39 -0.02 -1.04 16 30 H 0.09 -1.20 8.08 -2.39 -0.02 -1.22 16 31 H 0.16 -1.98 6.40 -2.91 -0.02 -2.00 16 32 H 0.41 -4.01 6.73 -92.71 -0.62 -4.63 16 33 H 0.10 -0.66 7.73 -2.38 -0.02 -0.68 16 34 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 35 H 0.15 -0.83 6.65 -2.91 -0.02 -0.85 16 36 H 0.14 -0.12 8.06 -2.91 -0.02 -0.14 16 37 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 38 H 0.16 -1.50 8.05 -2.91 -0.02 -1.53 16 39 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.10 -0.44 6.31 -2.39 -0.02 -0.46 16 41 H 0.40 0.91 9.06 -74.06 -0.67 0.24 16 42 H 0.11 0.04 7.83 -2.39 -0.02 0.02 16 43 H 0.38 -0.13 8.70 -74.06 -0.64 -0.78 16 44 H -0.27 0.55 6.68 99.48 0.66 1.22 16 45 H -0.31 -1.57 7.11 99.48 0.71 -0.86 16 46 H 0.15 -1.18 4.83 -2.91 -0.01 -1.19 16 Total: 0.00 -25.93 384.65 0.53 -25.41 By element: Atomic # 1 Polarization: -16.55 SS G_CDS: -0.88 Total: -17.43 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 3.28 Total: 11.65 kcal Atomic # 7 Polarization: 1.95 SS G_CDS: -2.31 Total: -0.36 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -2.42 Total: -18.25 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.78 Total: -0.42 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.07 Total: -0.61 kcal Total: -25.93 0.53 -25.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466350_13422088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.306 kcal (2) G-P(sol) polarization free energy of solvation -25.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds