Wall clock time and date at job start Tue Mar 9 2021 13:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99694 * 2 1 4 4 C 1.38715 * 120.05243 * 179.97438 * 3 2 1 5 5 C 1.38166 * 119.94528 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.97278 * 180.02562 * 5 4 3 7 7 H 1.09003 * 112.85245 * 11.19837 * 6 5 4 8 8 C 1.53778 * 113.61462 * 142.50679 * 6 5 4 9 9 C 1.53785 * 87.08335 * 139.98143 * 8 6 5 10 10 H 1.09001 * 113.61347 * 220.02148 * 9 8 6 11 11 N 1.46492 * 113.69046 * 89.12658 * 9 8 6 12 12 C 1.34780 * 120.00244 * 107.46819 * 11 9 8 13 13 O 1.21642 * 119.99526 * 359.97438 * 12 11 9 14 14 C 1.47053 * 120.00208 * 179.97438 * 12 11 9 15 15 C 1.35863 * 125.42889 * 179.69187 * 14 12 11 16 16 C 1.41597 * 107.73195 * 179.84890 * 15 14 12 17 17 C 1.40064 * 133.38161 * 180.08614 * 16 15 14 18 18 C 1.36469 * 119.83116 * 180.33526 * 17 16 15 19 19 C 1.38907 * 120.61354 * 359.97438 * 18 17 16 20 20 C 1.50693 * 119.67369 * 180.02562 * 19 18 17 21 21 O 1.42906 * 109.47211 * 120.02788 * 20 19 18 22 22 Si 1.86300 * 109.47546 * 0.02562 * 20 19 18 23 23 C 1.37714 * 120.64530 * 0.02562 * 19 18 17 24 24 C 1.39184 * 119.81217 * 359.97400 * 23 19 18 25 25 N 1.37487 * 133.18670 * 179.97438 * 24 23 19 26 26 C 1.53781 * 87.07856 * 334.56713 * 9 8 6 27 27 C 1.38244 * 120.05257 * 0.02562 * 5 4 3 28 28 C 1.38289 * 120.11625 * 359.95507 * 27 5 4 29 29 C 1.38125 * 120.05375 * 0.04238 * 28 27 5 30 30 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47292 * 300.00273 * 1 2 3 32 32 H 1.08998 * 109.47042 * 60.00021 * 1 2 3 33 33 H 1.08002 * 120.02716 * 359.70556 * 4 3 2 34 34 H 1.09007 * 113.61481 * 254.52830 * 8 6 5 35 35 H 1.08996 * 113.61695 * 25.43100 * 8 6 5 36 36 H 0.97004 * 120.00163 * 287.46184 * 11 9 8 37 37 H 1.08003 * 126.13210 * 0.02562 * 15 14 12 38 38 H 1.08002 * 120.08427 * 0.33798 * 17 16 15 39 39 H 1.07990 * 119.69575 * 179.97438 * 18 17 16 40 40 H 1.09004 * 109.46994 * 240.02230 * 20 19 18 41 41 H 0.96702 * 113.99199 * 299.99610 * 21 20 19 42 42 H 1.48497 * 110.00102 * 179.97438 * 22 20 19 43 43 H 1.48497 * 110.00223 * 301.32254 * 22 20 19 44 44 H 1.08003 * 120.09089 * 180.02562 * 23 19 18 45 45 H 0.97001 * 125.60433 * 0.02562 * 25 24 23 46 46 H 1.09002 * 113.61377 * 270.88505 * 26 9 8 47 47 H 1.09002 * 113.61445 * 139.98473 * 26 9 8 48 48 H 1.08000 * 119.94046 * 179.97438 * 27 5 4 49 49 H 1.07992 * 119.97564 * 180.02562 * 28 27 5 50 50 H 1.07995 * 120.03202 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4311 1.2848 0.0005 5 6 4.0560 2.5171 0.0000 6 6 5.5608 2.5982 0.0000 7 1 6.0365 1.6369 -0.1946 8 6 6.1158 3.7472 -0.8581 9 6 7.1514 3.9741 0.2558 10 1 7.3471 5.0264 0.4623 11 7 8.3773 3.1897 0.0885 12 6 9.5213 3.7981 -0.2823 13 8 9.5358 4.9985 -0.4786 14 6 10.7520 3.0107 -0.4497 15 6 11.9599 3.5073 -0.8241 16 6 12.8763 2.4286 -0.8635 17 6 14.2388 2.3346 -1.1743 18 6 14.8634 1.1220 -1.1287 19 6 14.1604 -0.0229 -0.7759 20 6 14.8714 -1.3509 -0.7319 21 8 14.7903 -1.8910 0.5887 22 14 16.6597 -1.1137 -1.1971 23 6 12.8203 0.0437 -0.4661 24 6 12.1610 1.2689 -0.5054 25 7 10.8630 1.6473 -0.2563 26 6 6.1380 3.3353 1.2200 27 6 3.3019 3.6758 -0.0005 28 6 1.9208 3.6048 -0.0015 29 6 1.2913 2.3753 -0.0010 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.0206 0.3799 0.0058 34 1 6.5532 3.4167 -1.8003 35 1 5.4187 4.5760 -0.9817 36 1 8.3656 2.2324 0.2447 37 1 12.1821 4.5402 -1.0483 38 1 14.7937 3.2194 -1.4492 39 1 15.9138 1.0520 -1.3691 40 1 14.4011 -2.0383 -1.4351 41 1 15.1900 -1.3307 1.2679 42 1 17.3720 -2.4161 -1.1568 43 1 16.7570 -0.5228 -2.5559 44 1 12.2825 -0.8522 -0.1926 45 1 10.1433 1.0544 0.0111 46 1 5.4469 4.0514 1.6646 47 1 6.5933 2.6722 1.9556 48 1 3.7922 4.6380 -0.0005 49 1 1.3340 4.5113 -0.0023 50 1 0.2128 2.3203 -0.0021 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_13158378.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:24 Heat of formation + Delta-G solvation = 16.692600 kcal Electronic energy + Delta-G solvation = -32522.402199 eV Core-core repulsion = 28061.931049 eV Total energy + Delta-G solvation = -4460.471150 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.73744 -41.64328 -40.84460 -39.74577 -38.90461 -37.90669 -36.87653 -34.71441 -33.27223 -32.20534 -31.28701 -30.76747 -30.40139 -28.27165 -27.26585 -26.73267 -25.93401 -24.41200 -23.61122 -23.22371 -22.36573 -22.00158 -21.31910 -20.38095 -19.57753 -18.79422 -18.38818 -17.80137 -17.27142 -17.06141 -16.92123 -16.82909 -16.70000 -16.53315 -16.14425 -15.87726 -15.82664 -15.52861 -15.27082 -15.09897 -14.82788 -14.69357 -14.53890 -14.43750 -14.32716 -14.11955 -14.03388 -13.52934 -13.30624 -13.24366 -13.12460 -12.70518 -12.58519 -12.51535 -12.34632 -12.15346 -12.02508 -11.71025 -11.63921 -11.62735 -11.42907 -11.31062 -10.97093 -10.42890 -10.29179 -9.77707 -9.33581 -9.18113 -8.83859 -4.93838 -0.38616 0.29869 0.45279 0.52386 0.92753 1.35168 1.68426 1.72103 1.91406 2.02583 2.14496 2.32622 2.70961 2.77144 3.39876 3.47669 3.57608 3.64864 3.69333 3.70665 3.73471 3.84851 3.91786 4.03915 4.05443 4.16255 4.24862 4.25030 4.29289 4.32255 4.35860 4.43949 4.50011 4.51642 4.57412 4.58734 4.64930 4.68460 4.75367 4.79610 4.88015 4.91847 4.97841 4.98408 5.05102 5.07943 5.29250 5.31856 5.40059 5.43110 5.48836 5.53390 5.57515 5.66173 5.80043 5.97592 6.22410 6.40667 6.40973 6.79904 6.91754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.109 3.891 4 C -0.166 4.166 5 C -0.034 4.034 6 C -0.069 4.069 7 H 0.108 0.892 8 C -0.140 4.140 9 C 0.116 3.884 10 H 0.096 0.904 11 N -0.696 5.696 12 C 0.589 3.411 13 O -0.557 6.557 14 C 0.010 3.990 15 C -0.116 4.116 16 C -0.135 4.135 17 C -0.057 4.057 18 C -0.148 4.148 19 C -0.089 4.089 20 C -0.071 4.071 21 O -0.555 6.555 22 Si 0.777 3.223 23 C -0.110 4.110 24 C 0.108 3.892 25 N -0.565 5.565 26 C -0.122 4.122 27 C -0.160 4.160 28 C -0.083 4.083 29 C -0.222 4.222 30 H 0.115 0.885 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.131 0.869 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.411 0.589 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.109 0.891 41 H 0.396 0.604 42 H -0.302 1.302 43 H -0.286 1.286 44 H 0.134 0.866 45 H 0.431 0.569 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -0.691 2.700 3.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.064 3.936 4 C -0.185 4.185 5 C -0.034 4.034 6 C -0.087 4.087 7 H 0.126 0.874 8 C -0.178 4.178 9 C 0.011 3.989 10 H 0.114 0.886 11 N -0.346 5.346 12 C 0.377 3.623 13 O -0.435 6.435 14 C -0.100 4.100 15 C -0.143 4.143 16 C -0.140 4.140 17 C -0.076 4.076 18 C -0.166 4.166 19 C -0.091 4.091 20 C -0.181 4.181 21 O -0.363 6.363 22 Si 0.684 3.316 23 C -0.131 4.131 24 C -0.003 4.003 25 N -0.171 5.171 26 C -0.160 4.160 27 C -0.178 4.178 28 C -0.101 4.101 29 C -0.240 4.240 30 H 0.133 0.867 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.247 0.753 37 H 0.174 0.826 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.126 0.874 41 H 0.246 0.754 42 H -0.230 1.230 43 H -0.213 1.213 44 H 0.152 0.848 45 H 0.271 0.729 46 H 0.125 0.875 47 H 0.106 0.894 48 H 0.159 0.841 49 H 0.161 0.839 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.443 -0.748 1.762 2.397 hybrid contribution -1.510 -0.855 -0.194 1.746 sum -2.952 -1.603 1.568 3.707 Atomic orbital electron populations 1.23292 0.76641 1.05383 1.02119 1.86039 1.23295 1.27340 1.88795 1.19300 0.92856 0.84643 0.96804 1.20501 0.91467 0.98858 1.07673 1.19600 0.95487 0.91848 0.96496 1.21627 0.90000 0.99469 0.97622 0.87433 1.23566 0.97789 0.98883 0.97596 1.21924 0.82844 0.96610 0.97537 0.88592 1.45439 1.08138 1.12092 1.68977 1.17260 0.82304 0.86348 0.76430 1.90859 1.85384 1.15178 1.52065 1.19957 0.95652 0.83444 1.10963 1.21110 0.90636 0.99720 1.02817 1.18445 0.95233 0.92740 1.07564 1.20638 0.91722 0.98820 0.96384 1.20694 1.00399 0.91839 1.03696 1.20162 0.93602 0.95724 0.99582 1.25163 1.11105 0.93232 0.88622 1.86466 1.83749 1.49768 1.16325 0.93565 0.74711 0.80474 0.82864 1.19981 0.94211 0.94589 1.04305 1.18443 0.84495 0.95496 1.01863 1.41790 1.09455 1.06457 1.59372 1.23383 0.96799 0.99901 0.95906 1.21185 0.93788 0.98806 1.04002 1.21251 0.95041 0.97537 0.96309 1.21494 1.00935 0.92444 1.09172 0.86691 0.91801 0.91901 0.85131 0.91414 0.87830 0.75257 0.82601 0.83409 0.83607 0.87375 0.75419 1.23031 1.21251 0.84803 0.72868 0.87532 0.89374 0.84120 0.83880 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.75 10.50 -92.40 -0.97 -2.72 16 3 C 0.11 0.51 6.69 22.51 0.15 0.66 16 4 C -0.17 -0.51 9.65 22.37 0.22 -0.29 16 5 C -0.03 0.00 5.29 -19.88 -0.11 -0.10 16 6 C -0.07 0.30 3.86 -11.02 -0.04 0.26 16 7 H 0.11 -0.70 8.09 -2.39 -0.02 -0.71 16 8 C -0.14 0.42 7.25 31.12 0.23 0.65 16 9 C 0.12 -0.30 4.32 45.52 0.20 -0.10 16 10 H 0.10 0.10 7.46 -2.39 -0.02 0.09 16 11 N -0.70 1.93 5.26 -443.66 -2.33 -0.40 16 12 C 0.59 2.47 7.80 86.55 0.68 3.14 16 13 O -0.56 -6.81 16.44 -4.16 -0.07 -6.88 16 14 C 0.01 0.03 6.97 39.91 0.28 0.30 16 15 C -0.12 -0.53 10.53 22.55 0.24 -0.29 16 16 C -0.14 -0.45 6.16 -21.36 -0.13 -0.58 16 17 C -0.06 -0.01 10.06 22.30 0.22 0.22 16 18 C -0.15 0.24 8.59 22.02 0.19 0.43 16 19 C -0.09 0.06 5.40 -19.83 -0.11 -0.04 16 20 C -0.07 0.12 2.81 71.23 0.20 0.32 16 21 O -0.56 0.66 12.76 -148.98 -1.90 -1.25 16 22 Si 0.78 -2.26 29.75 68.60 2.04 -0.22 16 23 C -0.11 -0.03 9.61 22.37 0.22 0.19 16 24 C 0.11 0.17 7.25 39.13 0.28 0.46 16 25 N -0.56 0.99 6.07 -177.19 -1.08 -0.09 16 26 C -0.12 0.71 7.29 31.12 0.23 0.94 16 27 C -0.16 0.11 8.61 22.28 0.19 0.31 16 28 C -0.08 0.00 10.04 22.25 0.22 0.22 16 29 C -0.22 -0.42 9.04 22.37 0.20 -0.22 16 30 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.06 -0.26 7.66 -2.39 -0.02 -0.28 16 32 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 33 H 0.13 0.19 8.05 -2.91 -0.02 0.16 16 34 H 0.07 -0.06 8.14 -2.38 -0.02 -0.08 16 35 H 0.10 -0.38 6.31 -2.39 -0.02 -0.40 16 36 H 0.41 -3.55 7.76 -92.71 -0.72 -4.27 16 37 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.15 -0.58 8.06 -2.91 -0.02 -0.61 16 39 H 0.15 -0.84 4.82 -2.92 -0.01 -0.86 16 40 H 0.11 -0.08 7.96 -2.38 -0.02 -0.09 16 41 H 0.40 -3.54 8.70 -74.06 -0.64 -4.18 16 42 H -0.30 -1.46 7.11 99.48 0.71 -0.75 16 43 H -0.29 -0.53 7.10 99.48 0.71 0.18 16 44 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 45 H 0.43 -3.58 8.12 -92.71 -0.75 -4.34 16 46 H 0.11 -0.65 7.72 -2.39 -0.02 -0.67 16 47 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 48 H 0.14 -0.62 6.65 -2.91 -0.02 -0.64 16 49 H 0.14 -0.60 8.06 -2.91 -0.02 -0.62 16 50 H 0.14 -0.22 6.30 -2.91 -0.02 -0.24 16 Total: 0.00 -22.86 411.94 -0.70 -23.56 By element: Atomic # 1 Polarization: -18.49 SS G_CDS: -1.06 Total: -19.54 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 4.66 Total: 7.53 kcal Atomic # 7 Polarization: 2.92 SS G_CDS: -3.41 Total: -0.49 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -2.94 Total: -10.84 kcal Atomic # 14 Polarization: -2.26 SS G_CDS: 2.04 Total: -0.22 kcal Total: -22.86 -0.70 -23.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_13158378.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.257 kcal (2) G-P(sol) polarization free energy of solvation -22.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds