Wall clock time and date at job start Tue Mar 9 2021 14:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86295 * 109.47215 * 2 1 4 4 C 1.86304 * 109.47046 * 240.00435 * 2 1 3 5 5 C 1.86796 * 109.47431 * 120.00355 * 2 1 3 6 6 C 1.38241 * 120.00104 * 90.00035 * 5 2 1 7 7 C 1.38228 * 119.99881 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00141 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00153 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47011 * 89.99639 * 9 8 7 11 11 C 1.34784 * 119.99635 * 180.02562 * 10 9 8 12 12 O 1.21279 * 119.99925 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99961 * 180.02562 * 11 10 9 14 14 C 1.52992 * 109.47257 * 180.02562 * 13 11 10 15 15 O 1.42902 * 109.47288 * 179.97438 * 14 13 11 16 16 C 1.35898 * 117.00159 * 180.02562 * 15 14 13 17 17 C 1.38716 * 120.05282 * 359.72524 * 16 15 14 18 18 C 1.38173 * 119.94117 * 179.72730 * 17 16 15 19 19 C 1.38244 * 120.05428 * 0.57011 * 18 17 16 20 20 C 1.38291 * 120.11093 * 359.67991 * 19 18 17 21 21 C 1.50703 * 119.97256 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.47552 * 245.02918 * 21 20 19 23 23 Si 1.86303 * 109.46947 * 5.02627 * 21 20 19 24 24 H 1.48500 * 109.47250 * 59.99776 * 23 21 20 25 25 H 1.48504 * 109.47203 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47308 * 299.99906 * 23 21 20 27 27 C 1.38121 * 120.05835 * 0.04923 * 20 19 18 28 28 C 1.38237 * 119.99998 * 0.25439 * 8 7 6 29 29 C 1.38233 * 119.99870 * 359.49219 * 28 8 7 30 30 H 1.09000 * 109.47054 * 299.99644 * 1 2 3 31 31 H 1.09004 * 109.47402 * 59.99861 * 1 2 3 32 32 H 1.09004 * 109.46753 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47631 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47502 * 300.00638 * 3 2 1 35 35 H 1.09000 * 109.46818 * 60.00212 * 3 2 1 36 36 H 1.09001 * 109.47313 * 300.00021 * 4 2 1 37 37 H 1.09004 * 109.47262 * 59.99618 * 4 2 1 38 38 H 1.09000 * 109.47298 * 179.97438 * 4 2 1 39 39 H 1.08001 * 119.99831 * 359.97438 * 6 5 2 40 40 H 1.08000 * 119.99797 * 179.97438 * 7 6 5 41 41 H 1.09005 * 109.46877 * 329.99631 * 9 8 7 42 42 H 1.09002 * 109.46993 * 209.99978 * 9 8 7 43 43 H 0.96995 * 120.00292 * 0.27660 * 10 9 8 44 44 H 1.09004 * 109.46932 * 300.00223 * 13 11 10 45 45 H 1.08997 * 109.47392 * 59.99562 * 13 11 10 46 46 H 1.09004 * 109.47330 * 299.99977 * 14 13 11 47 47 H 1.09005 * 109.47124 * 59.99773 * 14 13 11 48 48 H 1.07996 * 120.03450 * 359.97438 * 17 16 15 49 49 H 1.08001 * 119.97389 * 180.27979 * 18 17 16 50 50 H 1.07996 * 119.94561 * 179.71021 * 19 18 17 51 51 H 1.09001 * 109.47136 * 125.02528 * 21 20 19 52 52 H 0.96698 * 114.00122 * 59.99548 * 22 21 20 53 53 H 1.07999 * 120.02728 * 180.02562 * 27 20 19 54 54 H 1.08001 * 119.99559 * 179.72982 * 28 8 7 55 55 H 1.08001 * 120.00142 * 180.23110 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7162 -2.2433 1.4908 7 6 3.1765 -2.8950 2.6195 8 6 3.4069 -2.1841 3.7825 9 6 3.9082 -2.8948 5.0133 10 7 5.3732 -2.8959 5.0138 11 6 6.0462 -3.4803 6.0248 12 8 5.4390 -4.0049 6.9342 13 6 7.5532 -3.4810 6.0258 14 6 8.0621 -4.2036 7.2745 15 8 9.4912 -4.2048 7.2751 16 6 10.1072 -4.8121 8.3232 17 6 9.3520 -5.3898 9.3332 18 6 9.9807 -6.0115 10.3949 19 6 11.3613 -6.0478 10.4572 20 6 12.1164 -5.4680 9.4541 21 6 13.6212 -5.5099 9.5248 22 8 14.1286 -4.1816 9.6672 23 14 14.1458 -6.5352 10.9892 24 1 13.6185 -7.9156 10.8414 25 1 15.6286 -6.5771 11.0586 26 1 13.6084 -5.9309 12.2346 27 6 11.4927 -4.8502 8.3879 28 6 3.1720 -0.8223 3.8182 29 6 2.7166 -0.1697 2.6879 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5740 1.7565 -0.0005 34 1 2.1206 2.2703 -0.8899 35 1 2.1207 2.2702 0.8900 36 1 2.1206 -1.9058 -1.5213 37 1 2.1206 -0.3643 -2.4112 38 1 3.5740 -0.8778 -1.5215 39 1 2.5358 -2.7987 0.5823 40 1 3.3561 -3.9596 2.5928 41 1 3.5441 -3.9222 5.0133 42 1 3.5449 -2.3805 5.9031 43 1 5.8588 -2.4728 4.2886 44 1 7.9169 -3.9945 5.1357 45 1 7.9170 -2.4535 6.0265 46 1 7.6985 -3.6905 8.1649 47 1 7.6983 -5.2312 7.2734 48 1 8.2734 -5.3572 9.2877 49 1 9.3932 -6.4655 11.1793 50 1 11.8509 -6.5302 11.2902 51 1 14.0157 -5.9536 8.6107 52 1 13.8183 -3.7250 10.4611 53 1 12.0829 -4.3979 7.6046 54 1 3.3479 -0.2677 4.7281 55 1 2.5366 0.8949 2.7146 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_4549614.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:00:42 Heat of formation + Delta-G solvation = -102.066670 kcal Electronic energy + Delta-G solvation = -31026.267989 eV Core-core repulsion = 26730.544661 eV Total energy + Delta-G solvation = -4295.723328 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 387.182 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.44523 -40.94004 -39.93625 -39.12804 -37.27321 -36.07455 -33.54281 -32.49288 -32.16130 -31.86309 -30.82090 -29.42105 -28.28648 -28.27236 -27.47744 -26.82030 -24.92224 -23.72833 -23.45514 -22.19043 -22.03586 -21.42255 -19.40451 -18.39714 -17.81816 -17.70970 -17.55870 -17.18433 -16.85390 -16.70113 -16.57239 -16.15079 -15.80436 -15.77164 -15.60575 -14.99926 -14.76998 -14.59211 -14.38246 -14.35664 -14.24174 -14.15273 -14.02731 -13.90217 -13.75751 -13.54823 -13.45581 -13.25088 -13.13530 -13.10706 -12.96463 -12.95568 -12.87606 -12.65673 -12.39180 -12.15109 -11.92729 -11.92365 -11.83690 -11.52547 -11.27246 -10.89185 -10.76029 -10.75263 -10.46167 -10.26383 -9.95890 -9.79543 -9.65495 -9.30341 0.17288 0.18917 0.35365 0.53088 1.16717 1.46166 1.47751 1.54875 1.69922 1.85139 1.92781 2.03178 2.09384 2.49901 2.63458 2.67233 2.99470 3.50100 3.54321 3.65513 3.67757 3.82508 3.85110 3.91079 3.94723 4.04619 4.15902 4.17925 4.26408 4.34023 4.37643 4.54435 4.55259 4.60586 4.64195 4.64571 4.75009 4.75466 4.84358 4.84448 4.88754 4.90185 4.90380 4.90807 4.95827 5.01678 5.18246 5.22399 5.25219 5.33973 5.40230 5.41454 5.59176 5.59502 5.62703 5.66820 5.67785 5.71943 6.13267 6.29887 6.38667 6.69167 7.06567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.126 2.874 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.373 4.373 6 C -0.101 4.101 7 C -0.122 4.122 8 C -0.108 4.108 9 C 0.164 3.836 10 N -0.712 5.712 11 C 0.520 3.480 12 O -0.583 6.583 13 C -0.132 4.132 14 C 0.074 3.926 15 O -0.322 6.322 16 C 0.118 3.882 17 C -0.212 4.212 18 C -0.077 4.077 19 C -0.170 4.170 20 C -0.083 4.083 21 C -0.083 4.083 22 O -0.552 6.552 23 Si 0.990 3.010 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.250 1.250 27 C -0.136 4.136 28 C -0.122 4.122 29 C -0.101 4.101 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.416 0.584 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.136 0.864 49 H 0.149 0.851 50 H 0.136 0.864 51 H 0.125 0.875 52 H 0.389 0.611 53 H 0.135 0.865 54 H 0.126 0.874 55 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 2.243 -3.746 4.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.313 2.687 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.413 4.413 6 C -0.119 4.119 7 C -0.140 4.140 8 C -0.108 4.108 9 C 0.041 3.959 10 N -0.364 5.364 11 C 0.308 3.692 12 O -0.463 6.463 13 C -0.171 4.171 14 C -0.001 4.001 15 O -0.237 6.237 16 C 0.073 3.927 17 C -0.230 4.230 18 C -0.095 4.095 19 C -0.188 4.188 20 C -0.084 4.084 21 C -0.193 4.193 22 O -0.359 6.359 23 Si 0.814 3.186 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.174 1.174 27 C -0.154 4.154 28 C -0.141 4.141 29 C -0.119 4.119 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.155 0.845 40 H 0.144 0.856 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.253 0.747 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.154 0.846 49 H 0.166 0.834 50 H 0.153 0.847 51 H 0.143 0.857 52 H 0.238 0.762 53 H 0.152 0.848 54 H 0.144 0.856 55 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.974 1.288 -3.059 3.459 hybrid contribution -0.627 0.323 0.147 0.720 sum -1.601 1.611 -2.912 3.693 Atomic orbital electron populations 1.26328 1.21979 1.04380 1.04483 0.77163 0.64958 0.64686 0.61859 1.26280 1.06494 1.19364 1.04799 1.26281 1.06493 1.08439 1.15721 1.27943 1.02582 0.99641 1.11087 1.21379 0.97117 0.95093 0.98275 1.21344 0.99473 1.00261 0.92966 1.19809 1.01944 0.94364 0.94721 1.20132 0.79848 1.00280 0.95669 1.45947 1.06913 1.58041 1.25475 1.20648 0.90244 0.77079 0.81236 1.90739 1.71373 1.46834 1.37383 1.21425 0.90247 1.05456 1.00001 1.22431 0.77284 1.01370 0.99016 1.85953 1.21755 1.73278 1.42669 1.19164 0.92507 0.93638 0.87436 1.21536 1.00875 1.04196 0.96432 1.21199 0.94511 0.96372 0.97390 1.21200 0.94681 1.03208 0.99737 1.20251 0.96674 0.97395 0.94060 1.25133 0.90271 0.91100 1.12751 1.86491 1.72472 1.26883 1.50023 0.85111 0.78862 0.78390 0.76283 1.18132 1.19972 1.17358 1.20355 0.90995 1.03593 1.00477 1.21349 0.99485 0.93868 0.99349 1.21379 0.97133 1.00703 0.92647 0.91486 0.90800 0.91488 0.91144 0.90805 0.90965 0.90966 0.90806 0.91145 0.84505 0.85575 0.91246 0.91258 0.74678 0.85554 0.85558 0.91627 0.91630 0.84587 0.83351 0.84665 0.85707 0.76169 0.84750 0.85570 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.99 8.65 113.37 0.98 2.97 16 2 Si 1.13 -8.04 12.32 68.60 0.85 -7.19 16 3 C -0.46 2.61 8.53 113.37 0.97 3.58 16 4 C -0.46 2.61 8.53 113.37 0.97 3.58 16 5 C -0.37 1.11 4.59 22.27 0.10 1.22 16 6 C -0.10 0.21 9.29 22.27 0.21 0.41 16 7 C -0.12 0.10 9.70 22.27 0.22 0.32 16 8 C -0.11 0.05 5.25 -19.86 -0.10 -0.06 16 9 C 0.16 0.08 5.80 85.64 0.50 0.58 16 10 N -0.71 1.28 5.55 -466.77 -2.59 -1.31 16 11 C 0.52 1.09 7.83 87.66 0.69 1.77 16 12 O -0.58 -6.34 15.98 -3.03 -0.05 -6.39 16 13 C -0.13 0.37 6.07 29.85 0.18 0.55 16 14 C 0.07 0.16 4.03 71.98 0.29 0.45 16 15 O -0.32 -1.63 10.14 -92.40 -0.94 -2.56 16 16 C 0.12 0.69 6.69 22.51 0.15 0.85 16 17 C -0.21 -0.89 9.04 22.37 0.20 -0.69 16 18 C -0.08 -0.16 10.04 22.26 0.22 0.07 16 19 C -0.17 -0.31 8.67 22.28 0.19 -0.12 16 20 C -0.08 -0.22 5.35 -19.88 -0.11 -0.33 16 21 C -0.08 -0.01 2.80 71.24 0.20 0.19 16 22 O -0.55 -0.81 12.83 -148.98 -1.91 -2.72 16 23 Si 0.99 -0.96 25.14 68.60 1.72 0.77 16 24 H -0.26 -0.05 7.11 99.48 0.71 0.66 16 25 H -0.27 -0.64 7.11 99.48 0.71 0.07 16 26 H -0.25 0.34 7.04 99.48 0.70 1.04 16 27 C -0.14 -0.68 9.62 22.36 0.22 -0.47 16 28 C -0.12 0.10 9.70 22.27 0.22 0.32 16 29 C -0.10 0.21 9.29 22.27 0.21 0.41 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 32 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 33 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 34 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 35 H 0.07 -0.43 7.68 -2.39 -0.02 -0.44 16 36 H 0.07 -0.43 7.69 -2.39 -0.02 -0.44 16 37 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 38 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 39 H 0.14 -0.77 7.43 -2.91 -0.02 -0.80 16 40 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 41 H 0.07 0.16 8.09 -2.38 -0.02 0.14 16 42 H 0.07 0.16 8.08 -2.39 -0.02 0.14 16 43 H 0.42 -2.71 8.46 -92.71 -0.78 -3.49 16 44 H 0.13 -0.80 8.14 -2.38 -0.02 -0.82 16 45 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 46 H 0.07 0.22 7.61 -2.38 -0.02 0.20 16 47 H 0.07 0.22 7.63 -2.38 -0.02 0.20 16 48 H 0.14 0.37 6.30 -2.91 -0.02 0.35 16 49 H 0.15 -0.37 8.06 -2.91 -0.02 -0.39 16 50 H 0.14 -0.20 4.86 -2.91 -0.01 -0.21 16 51 H 0.13 -0.19 7.96 -2.39 -0.02 -0.21 16 52 H 0.39 -1.92 8.70 -74.06 -0.64 -2.56 16 53 H 0.13 0.60 8.06 -2.91 -0.02 0.58 16 54 H 0.13 -0.34 8.06 -2.91 -0.02 -0.37 16 55 H 0.14 -0.77 7.43 -2.91 -0.02 -0.80 16 Total: 0.00 -18.42 454.86 3.79 -14.64 By element: Atomic # 1 Polarization: -11.05 SS G_CDS: 0.21 Total: -10.84 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 6.49 Total: 15.61 kcal Atomic # 7 Polarization: 1.28 SS G_CDS: -2.59 Total: -1.31 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -2.90 Total: -11.67 kcal Atomic # 14 Polarization: -8.99 SS G_CDS: 2.57 Total: -6.42 kcal Total: -18.42 3.79 -14.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_4549614.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.431 kcal (2) G-P(sol) polarization free energy of solvation -18.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds