Wall clock time and date at job start Tue Mar 9 2021 14:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86300 * 109.47001 * 2 1 4 4 C 1.86299 * 109.46874 * 240.00203 * 2 1 3 5 5 C 1.86799 * 109.47028 * 120.00401 * 2 1 3 6 6 C 1.38234 * 120.00228 * 90.00161 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 N 1.46500 * 109.47298 * 89.99945 * 9 8 7 11 11 C 1.34770 * 119.99686 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00567 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99863 * 179.97438 * 11 10 9 14 14 O 1.42898 * 109.47207 * 179.97438 * 13 11 10 15 15 C 1.35905 * 116.99833 * 180.02562 * 14 13 11 16 16 C 1.38711 * 120.05821 * 359.72504 * 15 14 13 17 17 C 1.38158 * 119.94224 * 179.74778 * 16 15 14 18 18 C 1.38240 * 120.05804 * 0.52649 * 17 16 15 19 19 C 1.50706 * 119.94623 * 179.72603 * 18 17 16 20 20 O 1.42904 * 109.46977 * 245.02523 * 19 18 17 21 21 Si 1.86301 * 109.47024 * 5.02085 * 19 18 17 22 22 H 1.48503 * 109.46960 * 60.00043 * 21 19 18 23 23 H 1.48504 * 109.46936 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47251 * 300.00276 * 21 19 18 25 25 C 1.38283 * 120.11443 * 359.74594 * 18 17 16 26 26 C 1.38134 * 120.05093 * 359.97438 * 25 18 17 27 27 N 1.48000 * 120.02440 * 180.02562 * 26 25 18 28 28 O 1.21799 * 120.00608 * 359.97438 * 27 26 25 29 29 O 1.21800 * 120.00106 * 179.97438 * 27 26 25 30 30 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 31 31 C 1.38235 * 119.99567 * 270.01874 * 5 2 1 32 32 H 1.09001 * 109.47205 * 299.99925 * 1 2 3 33 33 H 1.08999 * 109.47227 * 59.99973 * 1 2 3 34 34 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.46574 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47152 * 300.00073 * 3 2 1 37 37 H 1.09000 * 109.46711 * 60.00392 * 3 2 1 38 38 H 1.09007 * 109.47223 * 300.00044 * 4 2 1 39 39 H 1.08999 * 109.47337 * 59.99891 * 4 2 1 40 40 H 1.09000 * 109.47073 * 180.02562 * 4 2 1 41 41 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 42 42 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 43 43 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 44 44 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 45 45 H 0.96993 * 119.99824 * 0.02562 * 10 9 8 46 46 H 1.08994 * 109.47437 * 299.99933 * 13 11 10 47 47 H 1.09001 * 109.46970 * 60.00315 * 13 11 10 48 48 H 1.08000 * 120.02619 * 0.02562 * 16 15 14 49 49 H 1.08007 * 119.97291 * 180.27715 * 17 16 15 50 50 H 1.08999 * 109.47034 * 125.02276 * 19 18 17 51 51 H 0.96692 * 114.00332 * 59.99698 * 20 19 18 52 52 H 1.07998 * 119.97684 * 179.97438 * 25 18 17 53 53 H 1.08001 * 120.00279 * 180.02562 * 30 8 7 54 54 H 1.07997 * 120.00423 * 359.97438 * 31 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7161 -2.2433 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4067 -2.1841 3.7827 9 6 3.9021 -2.8958 5.0152 10 7 5.3671 -2.9027 5.0195 11 6 6.0352 -3.4889 6.0325 12 8 5.4237 -4.0104 6.9409 13 6 7.5422 -3.4965 6.0367 14 8 8.0119 -4.1713 7.2055 15 6 9.3583 -4.2664 7.3638 16 6 10.2098 -3.7267 6.4110 17 6 11.5781 -3.8202 6.5769 18 6 12.0990 -4.4605 7.6858 19 6 13.5921 -4.5665 7.8611 20 8 13.9831 -5.9394 7.7955 21 14 14.4455 -3.6125 6.5075 22 1 14.0391 -2.1858 6.5755 23 1 15.9168 -3.7174 6.6799 24 1 14.0609 -4.1743 5.1877 25 6 11.2525 -5.0044 8.6343 26 6 9.8836 -4.9085 8.4760 27 7 8.9780 -5.4903 9.4918 28 8 9.4396 -6.0543 10.4677 29 8 7.7711 -5.4051 9.3520 30 6 3.1773 -0.8214 3.8166 31 6 2.7157 -0.1698 2.6882 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 3.5740 1.7564 0.0005 36 1 2.1207 2.2703 -0.8900 37 1 2.1207 2.2702 0.8900 38 1 2.1206 -1.9059 -1.5212 39 1 2.1206 -0.3644 -2.4111 40 1 3.5740 -0.8786 -1.5210 41 1 2.5358 -2.7987 0.5824 42 1 3.3560 -3.9596 2.5931 43 1 3.5386 -2.3794 5.9037 44 1 3.5339 -3.9217 5.0151 45 1 5.8561 -2.4853 4.2933 46 1 7.9054 -4.0128 5.1482 47 1 7.9107 -2.4707 6.0371 48 1 9.8033 -3.2299 5.5424 49 1 12.2416 -3.3962 5.8375 50 1 13.8744 -4.1541 8.8298 51 1 13.7627 -6.3717 6.9592 52 1 11.6618 -5.5045 9.4996 53 1 3.3576 -0.2659 4.7251 54 1 2.5358 0.8947 2.7150 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_4549638.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:06:01 Heat of formation + Delta-G solvation = -88.508572 kcal Electronic energy + Delta-G solvation = -36171.482979 eV Core-core repulsion = 31200.868758 eV Total energy + Delta-G solvation = -4970.614221 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 418.161 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.30453 -41.81469 -40.90737 -40.00513 -39.33947 -37.59575 -37.37886 -36.08101 -33.53352 -32.62470 -32.21005 -31.85392 -30.02857 -29.36070 -28.27724 -28.26709 -27.83515 -26.95902 -26.27690 -24.08733 -23.44471 -22.85349 -22.09655 -21.80225 -20.54433 -19.79351 -19.26309 -18.77471 -18.64848 -18.24584 -17.66824 -17.42781 -17.27249 -16.68990 -16.48826 -16.30074 -16.08528 -15.85499 -15.66158 -15.57525 -15.29464 -14.97503 -14.33448 -14.18129 -14.10815 -14.06141 -14.01978 -13.89850 -13.89372 -13.74291 -13.53804 -13.44403 -13.25291 -13.13965 -13.09968 -12.95488 -12.70840 -12.66152 -12.41018 -12.31353 -12.27511 -12.20589 -12.08864 -11.91418 -11.73138 -11.22755 -10.88528 -10.86088 -10.75292 -10.74392 -10.52410 -10.30874 -9.82438 -9.78561 -9.65348 -1.33119 -0.26553 0.13582 0.17235 0.33935 0.54030 1.14093 1.22776 1.39547 1.47519 1.54796 1.85906 1.98236 2.01160 2.04337 2.07081 2.35312 2.67922 2.96290 3.10317 3.21568 3.38120 3.52635 3.58400 3.66495 3.68358 3.77006 3.87801 3.88930 3.96787 4.17134 4.27500 4.34762 4.37635 4.55668 4.56629 4.60641 4.61580 4.76179 4.79635 4.84524 4.84820 4.89559 4.90837 4.91298 4.91861 5.02098 5.05668 5.16728 5.19334 5.20384 5.42175 5.60187 5.60236 5.63592 5.68375 5.71404 5.72984 6.13943 6.36591 6.41759 6.68156 7.06423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.128 2.872 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.372 4.372 6 C -0.100 4.100 7 C -0.121 4.121 8 C -0.106 4.106 9 C 0.165 3.835 10 N -0.704 5.704 11 C 0.508 3.492 12 O -0.565 6.565 13 C 0.026 3.974 14 O -0.291 6.291 15 C 0.193 3.807 16 C -0.190 4.190 17 C -0.018 4.018 18 C -0.149 4.149 19 C -0.086 4.086 20 O -0.554 6.554 21 Si 0.985 3.015 22 H -0.242 1.242 23 H -0.279 1.279 24 H -0.231 1.231 25 C 0.003 3.997 26 C -0.103 4.103 27 N 0.034 4.966 28 O -0.195 6.195 29 O -0.178 6.178 30 C -0.121 4.121 31 C -0.100 4.100 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.127 0.873 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.420 0.580 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.202 0.798 49 H 0.177 0.823 50 H 0.126 0.874 51 H 0.392 0.608 52 H 0.157 0.843 53 H 0.126 0.874 54 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 7.872 -13.826 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.315 2.685 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.412 4.412 6 C -0.118 4.118 7 C -0.139 4.139 8 C -0.106 4.106 9 C 0.042 3.958 10 N -0.359 5.359 11 C 0.294 3.706 12 O -0.442 6.442 13 C -0.051 4.051 14 O -0.201 6.201 15 C 0.143 3.857 16 C -0.209 4.209 17 C -0.035 4.035 18 C -0.151 4.151 19 C -0.195 4.195 20 O -0.362 6.362 21 Si 0.806 3.194 22 H -0.165 1.165 23 H -0.205 1.205 24 H -0.153 1.153 25 C -0.017 4.017 26 C -0.188 4.188 27 N 0.545 4.455 28 O -0.404 6.404 29 O -0.390 6.390 30 C -0.139 4.139 31 C -0.118 4.118 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.155 0.845 42 H 0.144 0.856 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.258 0.742 46 H 0.161 0.839 47 H 0.161 0.839 48 H 0.219 0.781 49 H 0.194 0.806 50 H 0.144 0.856 51 H 0.241 0.759 52 H 0.175 0.825 53 H 0.144 0.856 54 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.383 8.225 -13.489 16.691 hybrid contribution -0.859 -0.783 0.667 1.340 sum 4.524 7.441 -12.823 15.500 Atomic orbital electron populations 1.26365 1.22309 1.04317 1.04418 0.77138 0.64741 0.64734 0.61917 1.26275 1.06582 1.19291 1.04761 1.26275 1.06581 1.08399 1.15646 1.27924 1.02535 0.99653 1.11046 1.21370 0.97067 0.95050 0.98289 1.21343 0.99423 1.00253 0.92903 1.19747 1.02134 0.94282 0.94455 1.20119 0.79546 1.00310 0.95791 1.45708 1.06867 1.58347 1.24935 1.20508 0.89920 0.78193 0.81964 1.90854 1.70558 1.45510 1.37283 1.23083 0.91495 1.01850 0.88624 1.86472 1.17595 1.72031 1.43983 1.18946 0.84097 0.91136 0.91545 1.21745 0.93063 1.05250 1.00793 1.21733 0.95473 0.91130 0.95206 1.20467 0.97478 1.01903 0.95231 1.25287 0.90768 0.89882 1.13591 1.86552 1.83022 1.23052 1.43532 0.85207 0.78582 0.78998 0.76579 1.16496 1.20469 1.15345 1.20898 0.87728 0.93276 0.99752 1.20890 0.90908 1.13909 0.93135 1.43877 1.01951 0.98422 1.01267 1.94499 1.80397 1.43799 1.21752 1.94688 0.97521 1.63698 1.83142 1.21346 0.99422 0.93830 0.99335 1.21374 0.97066 1.00720 0.92625 0.91572 0.90869 0.91567 0.90969 0.90869 0.91011 0.91007 0.90870 0.90968 0.84500 0.85551 0.91428 0.91416 0.74226 0.83901 0.83938 0.78103 0.80589 0.85622 0.75895 0.82502 0.85563 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.27 8.65 113.37 0.98 3.25 16 2 Si 1.13 -9.41 12.32 68.60 0.85 -8.57 16 3 C -0.46 3.23 8.53 113.37 0.97 4.20 16 4 C -0.46 3.24 8.53 113.37 0.97 4.21 16 5 C -0.37 1.66 4.59 22.27 0.10 1.76 16 6 C -0.10 0.36 9.29 22.27 0.21 0.57 16 7 C -0.12 0.29 9.70 22.27 0.22 0.50 16 8 C -0.11 0.20 5.25 -19.87 -0.10 0.09 16 9 C 0.17 0.00 5.80 85.63 0.50 0.50 16 10 N -0.70 2.70 5.55 -466.79 -2.59 0.11 16 11 C 0.51 1.22 7.91 87.66 0.69 1.91 16 12 O -0.56 -9.01 16.50 16.01 0.26 -8.75 16 13 C 0.03 -0.16 5.22 71.24 0.37 0.21 16 14 O -0.29 -1.54 7.68 -63.46 -0.49 -2.03 16 15 C 0.19 0.25 6.67 22.50 0.15 0.40 16 16 C -0.19 1.79 9.04 22.36 0.20 1.99 16 17 C -0.02 0.18 8.66 22.25 0.19 0.38 16 18 C -0.15 0.81 5.35 -19.85 -0.11 0.71 16 19 C -0.09 0.60 2.80 71.24 0.20 0.80 16 20 O -0.55 2.17 12.83 -148.98 -1.91 0.26 16 21 Si 0.99 -9.38 25.13 68.60 1.72 -7.66 16 22 H -0.24 2.43 7.11 99.48 0.71 3.14 16 23 H -0.28 1.01 7.11 99.48 0.71 1.71 16 24 H -0.23 2.81 7.04 99.48 0.70 3.51 16 25 C 0.00 0.00 9.19 22.26 0.20 0.21 16 26 C -0.10 -0.74 6.87 36.48 0.25 -0.49 16 27 N 0.03 0.57 4.45 -46.24 -0.21 0.37 16 28 O -0.20 -3.57 18.45 18.89 0.35 -3.22 16 29 O -0.18 -3.92 17.24 25.61 0.44 -3.48 16 30 C -0.12 0.28 9.70 22.27 0.22 0.50 16 31 C -0.10 0.36 9.29 22.27 0.21 0.56 16 32 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 33 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 34 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 35 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 36 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 37 H 0.07 -0.51 7.69 -2.39 -0.02 -0.53 16 38 H 0.07 -0.51 7.69 -2.38 -0.02 -0.53 16 39 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 40 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 41 H 0.14 -0.97 7.43 -2.91 -0.02 -0.99 16 42 H 0.13 -0.52 8.06 -2.91 -0.02 -0.54 16 43 H 0.07 0.18 8.08 -2.39 -0.02 0.16 16 44 H 0.07 0.18 8.09 -2.39 -0.02 0.16 16 45 H 0.42 -4.62 8.46 -92.71 -0.78 -5.41 16 46 H 0.14 -2.10 7.65 -2.39 -0.02 -2.12 16 47 H 0.14 -2.08 7.67 -2.39 -0.02 -2.10 16 48 H 0.20 -3.82 6.30 -2.91 -0.02 -3.84 16 49 H 0.18 -2.92 4.86 -2.91 -0.01 -2.93 16 50 H 0.13 -0.94 7.96 -2.39 -0.02 -0.96 16 51 H 0.39 -4.35 8.70 -74.06 -0.64 -4.99 16 52 H 0.16 0.40 7.61 -2.91 -0.02 0.37 16 53 H 0.13 -0.51 8.06 -2.91 -0.02 -0.53 16 54 H 0.14 -0.97 7.43 -2.91 -0.02 -0.99 16 Total: 0.00 -36.25 459.93 5.12 -31.13 By element: Atomic # 1 Polarization: -20.69 SS G_CDS: 0.28 Total: -20.41 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 6.41 Total: 22.26 kcal Atomic # 7 Polarization: 3.28 SS G_CDS: -2.80 Total: 0.48 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -1.35 Total: -17.22 kcal Atomic # 14 Polarization: -18.80 SS G_CDS: 2.57 Total: -16.23 kcal Total: -36.25 5.12 -31.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_4549638.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.382 kcal (2) G-P(sol) polarization free energy of solvation -36.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds