Wall clock time and date at job start Tue Mar 9 2021 14:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35986 * 117.00135 * 2 1 4 4 C 1.38670 * 119.99746 * 0.02562 * 3 2 1 5 5 C 1.38164 * 119.99454 * 179.74710 * 4 3 2 6 6 C 1.38668 * 120.00164 * 0.51189 * 5 4 3 7 7 O 1.35984 * 120.00205 * 179.74284 * 6 5 4 8 8 C 1.42898 * 116.99866 * 359.72559 * 7 6 5 9 9 C 1.50702 * 109.47207 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99570 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99863 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99686 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47298 * 180.02562 * 12 11 9 14 14 C 1.38234 * 119.99895 * 269.72894 * 13 12 11 15 15 C 1.38240 * 120.00062 * 180.32314 * 14 13 12 16 16 C 1.38235 * 119.99708 * 359.94741 * 15 14 13 17 17 Si 1.86799 * 119.99567 * 180.02562 * 16 15 14 18 18 C 1.86304 * 109.47028 * 270.01874 * 17 16 15 19 19 C 1.86300 * 109.47557 * 30.01935 * 17 16 15 20 20 C 1.86299 * 109.47132 * 150.02230 * 17 16 15 21 21 C 1.38234 * 120.00204 * 0.02562 * 16 15 14 22 22 C 1.38230 * 119.99885 * 0.02562 * 21 16 15 23 23 C 1.38727 * 119.99897 * 359.46763 * 6 5 4 24 24 C 1.50700 * 119.99854 * 180.29521 * 23 6 5 25 25 O 1.42898 * 109.47376 * 285.00215 * 24 23 6 26 26 Si 1.86300 * 109.46755 * 165.00137 * 24 23 6 27 27 H 1.48501 * 109.47156 * 60.00272 * 26 24 23 28 28 H 1.48498 * 109.46933 * 180.02562 * 26 24 23 29 29 H 1.48506 * 109.46982 * 300.00028 * 26 24 23 30 30 C 1.38108 * 119.99733 * 0.27560 * 23 6 5 31 31 H 1.09000 * 109.46472 * 60.00290 * 1 2 3 32 32 H 1.08992 * 109.47358 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47191 * 300.00769 * 1 2 3 34 34 H 1.07997 * 120.00508 * 0.02902 * 4 3 2 35 35 H 1.08001 * 119.99546 * 180.25364 * 5 4 3 36 36 H 1.08994 * 109.46877 * 59.99912 * 8 7 6 37 37 H 1.09001 * 109.46887 * 299.99923 * 8 7 6 38 38 H 0.96993 * 120.00490 * 359.97438 * 11 9 8 39 39 H 1.09003 * 109.47105 * 60.00289 * 12 11 9 40 40 H 1.09001 * 109.47682 * 300.00402 * 12 11 9 41 41 H 1.08001 * 120.00299 * 0.24986 * 14 13 12 42 42 H 1.07997 * 119.99868 * 179.97438 * 15 14 13 43 43 H 1.09001 * 109.47205 * 60.00326 * 18 17 16 44 44 H 1.08999 * 109.47227 * 180.02562 * 18 17 16 45 45 H 1.09001 * 109.47246 * 300.00625 * 18 17 16 46 46 H 1.09000 * 109.46574 * 59.99905 * 19 17 16 47 47 H 1.08999 * 109.47152 * 179.97438 * 19 17 16 48 48 H 1.09000 * 109.46711 * 300.00315 * 19 17 16 49 49 H 1.09007 * 109.47223 * 59.99783 * 20 17 16 50 50 H 1.08999 * 109.47337 * 179.97438 * 20 17 16 51 51 H 1.09000 * 109.47073 * 300.00140 * 20 17 16 52 52 H 1.07992 * 119.99701 * 179.97438 * 21 16 15 53 53 H 1.08000 * 120.00356 * 179.97438 * 22 21 16 54 54 H 1.09003 * 109.47015 * 45.00738 * 24 23 6 55 55 H 0.96700 * 113.99960 * 60.00021 * 25 24 23 56 56 H 1.08004 * 119.99515 * 179.97438 * 30 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2911 2.3746 0.0005 5 6 1.9185 3.6056 0.0058 6 6 3.3032 3.6781 -0.0001 7 8 3.9207 4.8897 -0.0002 8 6 3.0808 6.0458 -0.0001 9 6 3.9350 7.2874 -0.0009 10 8 5.1440 7.1915 -0.0019 11 7 3.3554 8.5041 -0.0014 12 6 4.1858 9.7110 -0.0016 13 6 3.3001 10.9302 -0.0015 14 6 2.8984 11.4927 -1.1987 15 6 2.0914 12.6151 -1.1987 16 6 1.6853 13.1743 -0.0015 17 14 0.5943 14.6906 -0.0015 18 6 1.6573 16.2205 0.0022 19 6 -0.4787 14.6837 -1.5245 20 6 -0.4839 14.6798 1.5177 21 6 2.0866 12.6115 1.1956 22 6 2.8944 11.4898 1.1956 23 6 4.0588 2.5147 -0.0003 24 6 5.5637 2.5935 0.0000 25 8 6.0214 2.9670 -1.3012 26 14 6.2725 0.9316 0.4543 27 1 5.8301 -0.0827 -0.5360 28 1 7.7554 1.0094 0.4552 29 1 5.7968 0.5436 1.8066 30 6 3.4317 1.2842 -0.0002 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5140 0.8899 34 1 0.2126 2.3182 0.0014 35 1 1.3302 4.5114 0.0104 36 1 2.4517 6.0377 0.8899 37 1 2.4514 6.0378 -0.8900 38 1 2.3885 8.5807 -0.0017 39 1 4.8153 9.7187 -0.8914 40 1 4.8150 9.7193 0.8885 41 1 3.2159 11.0559 -2.1340 42 1 1.7779 13.0547 -2.1340 43 1 2.2881 16.2269 -0.8867 44 1 1.0207 17.1053 0.0027 45 1 2.2851 16.2246 0.8933 46 1 -1.1006 13.7885 -1.5266 47 1 -1.1156 15.5682 -1.5242 48 1 0.1522 14.6899 -2.4134 49 1 0.1439 14.6839 2.4089 50 1 -1.1202 15.5648 1.5180 51 1 -1.1058 13.7847 1.5156 52 1 1.7697 13.0487 2.1309 53 1 3.2083 11.0503 2.1308 54 1 5.8884 3.3380 0.7270 55 1 5.6908 3.8240 -1.6034 56 1 4.0199 0.3784 -0.0007 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_4974302.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:07:02 Heat of formation + Delta-G solvation = -129.403053 kcal Electronic energy + Delta-G solvation = -34368.381018 eV Core-core repulsion = 29752.790103 eV Total energy + Delta-G solvation = -4615.590914 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 403.182 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.84488 -40.99904 -40.13851 -39.65327 -38.13493 -36.95297 -36.04998 -32.88138 -32.56324 -31.85222 -31.01758 -29.65842 -29.30137 -28.27987 -28.26715 -28.02356 -26.62591 -26.55104 -23.76129 -23.44436 -22.43105 -22.08895 -21.70513 -19.57112 -18.84133 -18.76916 -18.11178 -17.60328 -17.50377 -17.34030 -16.77129 -16.67385 -16.38383 -16.25076 -15.82778 -15.67879 -15.58688 -15.46067 -15.24307 -14.78613 -14.33360 -14.27540 -14.19266 -14.08090 -14.01685 -13.89538 -13.84562 -13.67912 -13.58492 -13.44370 -13.39000 -13.14319 -13.10184 -13.05893 -12.95745 -12.65693 -12.52647 -12.29786 -12.26565 -11.91274 -11.83330 -11.46493 -11.29606 -11.13130 -11.09419 -10.87818 -10.75113 -10.74605 -10.28927 -10.12225 -9.78433 -9.64966 -8.84492 0.03664 0.18440 0.31017 0.54168 1.14816 1.41936 1.44166 1.48722 1.50115 1.85965 1.90470 2.04027 2.09850 2.31866 2.52339 2.59058 2.67852 2.99183 3.48374 3.55250 3.66182 3.72544 3.87450 3.90650 3.95789 4.06814 4.08228 4.12398 4.17208 4.20903 4.33334 4.35471 4.40624 4.42072 4.56603 4.60984 4.67306 4.75303 4.76368 4.84695 4.84859 4.89314 4.90710 4.91041 4.91485 4.96911 5.02498 5.10214 5.17927 5.19416 5.20877 5.39064 5.42478 5.60094 5.60230 5.63699 5.68298 5.72740 6.11483 6.14283 6.36923 6.43337 6.56895 7.06384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.089 3.911 4 C -0.160 4.160 5 C -0.157 4.157 6 C 0.096 3.904 7 O -0.311 6.311 8 C 0.039 3.961 9 C 0.514 3.486 10 O -0.568 6.568 11 N -0.706 5.706 12 C 0.166 3.834 13 C -0.106 4.106 14 C -0.121 4.121 15 C -0.101 4.101 16 C -0.372 4.372 17 Si 1.127 2.873 18 C -0.467 4.467 19 C -0.462 4.462 20 C -0.462 4.462 21 C -0.100 4.100 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.088 4.088 25 O -0.549 6.549 26 Si 1.034 2.966 27 H -0.261 1.261 28 H -0.271 1.271 29 H -0.239 1.239 30 C -0.137 4.137 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.418 0.582 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.127 0.873 42 H 0.137 0.863 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.137 0.863 53 H 0.127 0.873 54 H 0.079 0.921 55 H 0.375 0.625 56 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.654 5.077 1.084 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.044 3.956 4 C -0.179 4.179 5 C -0.176 4.176 6 C 0.051 3.949 7 O -0.225 6.225 8 C -0.039 4.039 9 C 0.300 3.700 10 O -0.446 6.446 11 N -0.361 5.361 12 C 0.043 3.957 13 C -0.107 4.107 14 C -0.140 4.140 15 C -0.118 4.118 16 C -0.412 4.412 17 Si 1.315 2.685 18 C -0.573 4.573 19 C -0.569 4.569 20 C -0.569 4.569 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.117 4.117 24 C -0.196 4.196 25 O -0.356 6.356 26 Si 0.855 3.145 27 H -0.185 1.185 28 H -0.196 1.196 29 H -0.162 1.162 30 C -0.155 4.155 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.180 0.820 35 H 0.187 0.813 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.255 0.745 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.091 0.909 51 H 0.089 0.911 52 H 0.155 0.845 53 H 0.145 0.855 54 H 0.097 0.903 55 H 0.224 0.776 56 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.809 3.452 1.350 9.557 hybrid contribution -0.851 1.112 -0.238 1.420 sum -9.659 4.564 1.111 10.741 Atomic orbital electron populations 1.23362 0.76242 1.05599 1.02492 1.86080 1.23581 1.26624 1.89021 1.18977 0.91863 0.85412 0.99352 1.21406 1.01567 0.90837 1.04077 1.21398 0.92170 0.99928 1.04082 1.18709 0.91566 0.84195 1.00424 1.86086 1.35308 1.11716 1.89356 1.22695 0.92570 0.81787 1.06868 1.20523 0.88352 0.85237 0.75872 1.90778 1.16547 1.87299 1.49993 1.45760 1.11399 1.03966 1.74948 1.20125 0.91941 0.80999 1.02635 1.19768 0.99768 0.96991 0.94162 1.21353 0.98201 0.96882 0.97536 1.21376 0.96254 0.95106 0.99096 1.27923 1.06879 1.12437 0.93950 0.77140 0.63724 0.61593 0.66087 1.26350 1.10240 1.16426 1.04297 1.26280 1.10194 1.04724 1.15743 1.26280 1.10253 1.04720 1.15681 1.21371 0.96263 0.95097 0.99095 1.21349 0.98194 0.96912 0.97531 1.19424 0.96437 0.90652 1.05146 1.25288 0.92195 1.13440 0.88638 1.86633 1.74168 1.42521 1.32282 0.84218 0.78247 0.72337 0.79707 1.18545 1.19559 1.16233 1.20286 0.92837 0.97290 1.05130 0.91407 0.86832 0.91265 0.82047 0.81323 0.85834 0.85711 0.74461 0.91246 0.91300 0.85521 0.84526 0.91528 0.90858 0.91529 0.91057 0.90859 0.90987 0.90987 0.90859 0.91051 0.84524 0.85537 0.90288 0.77590 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.04 16 2 O -0.34 -1.50 10.50 -93.40 -0.98 -2.48 16 3 C 0.09 0.41 6.69 22.49 0.15 0.56 16 4 C -0.16 0.16 9.03 22.36 0.20 0.36 16 5 C -0.16 0.33 9.03 22.35 0.20 0.53 16 6 C 0.10 0.33 6.62 22.49 0.15 0.48 16 7 O -0.31 -1.21 8.56 -74.33 -0.64 -1.84 16 8 C 0.04 -0.17 5.22 71.24 0.37 0.21 16 9 C 0.51 0.99 7.91 87.66 0.69 1.68 16 10 O -0.57 -7.41 16.50 16.01 0.26 -7.15 16 11 N -0.71 2.41 5.55 -466.79 -2.59 -0.18 16 12 C 0.17 -0.06 5.80 85.63 0.50 0.44 16 13 C -0.11 0.18 5.25 -19.87 -0.10 0.07 16 14 C -0.12 0.25 9.70 22.27 0.22 0.46 16 15 C -0.10 0.32 9.29 22.27 0.21 0.52 16 16 C -0.37 1.50 4.59 22.27 0.10 1.61 16 17 Si 1.13 -8.98 12.32 68.60 0.85 -8.13 16 18 C -0.47 2.21 8.65 113.37 0.98 3.19 16 19 C -0.46 3.01 8.53 113.37 0.97 3.97 16 20 C -0.46 3.02 8.53 113.37 0.97 3.98 16 21 C -0.10 0.32 9.29 22.27 0.21 0.53 16 22 C -0.12 0.25 9.70 22.27 0.22 0.46 16 23 C -0.12 -0.79 5.28 -19.78 -0.10 -0.89 16 24 C -0.09 -0.68 2.33 71.24 0.17 -0.52 16 25 O -0.55 -5.52 12.65 -148.98 -1.89 -7.40 16 26 Si 1.03 6.69 25.74 68.60 1.77 8.46 16 27 H -0.26 -2.02 6.73 99.48 0.67 -1.35 16 28 H -0.27 -2.32 7.11 99.48 0.71 -1.61 16 29 H -0.24 -1.12 7.11 99.48 0.71 -0.41 16 30 C -0.14 -0.97 8.59 22.35 0.19 -0.78 16 31 H 0.07 -0.46 7.66 -2.39 -0.02 -0.48 16 32 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 33 H 0.07 -0.50 7.66 -2.38 -0.02 -0.51 16 34 H 0.16 -1.12 6.29 -2.91 -0.02 -1.14 16 35 H 0.17 -1.69 6.29 -2.91 -0.02 -1.70 16 36 H 0.12 -1.27 7.65 -2.39 -0.02 -1.29 16 37 H 0.13 -1.31 7.67 -2.39 -0.02 -1.33 16 38 H 0.42 -3.94 8.46 -92.71 -0.78 -4.72 16 39 H 0.07 0.12 8.08 -2.39 -0.02 0.11 16 40 H 0.07 0.13 8.08 -2.39 -0.02 0.11 16 41 H 0.13 -0.49 8.06 -2.91 -0.02 -0.51 16 42 H 0.14 -0.91 7.43 -2.91 -0.02 -0.93 16 43 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 44 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 45 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 46 H 0.07 -0.45 7.96 -2.39 -0.02 -0.46 16 47 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 48 H 0.07 -0.48 7.69 -2.39 -0.02 -0.50 16 49 H 0.07 -0.48 7.69 -2.38 -0.02 -0.50 16 50 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 51 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 52 H 0.14 -0.91 7.43 -2.91 -0.02 -0.93 16 53 H 0.13 -0.49 8.06 -2.91 -0.02 -0.51 16 54 H 0.08 0.59 7.82 -2.39 -0.02 0.57 16 55 H 0.38 2.59 8.60 -74.06 -0.64 1.96 16 56 H 0.14 0.93 4.89 -2.91 -0.01 0.92 16 Total: 0.00 -23.63 462.01 4.37 -19.26 By element: Atomic # 1 Polarization: -18.64 SS G_CDS: 0.20 Total: -18.44 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 7.39 Total: 17.91 kcal Atomic # 7 Polarization: 2.41 SS G_CDS: -2.59 Total: -0.18 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -3.24 Total: -18.87 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: 2.61 Total: 0.32 kcal Total: -23.63 4.37 -19.26 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_4974302.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.144 kcal (2) G-P(sol) polarization free energy of solvation -23.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds