Wall clock time and date at job start Tue Mar 9 2021 14:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.47291 * 2 1 4 4 C 1.86296 * 109.46889 * 239.99718 * 2 1 3 5 5 C 1.86803 * 109.46831 * 120.00018 * 2 1 3 6 6 C 1.38236 * 119.99592 * 89.99862 * 5 2 1 7 7 C 1.38240 * 119.99414 * 180.02562 * 6 5 2 8 8 C 1.38234 * 120.00082 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99642 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47174 * 89.99574 * 9 8 7 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 N 1.46499 * 109.47257 * 180.27849 * 13 11 10 15 15 C 1.36831 * 125.06576 * 265.02681 * 14 13 11 16 16 C 1.34238 * 109.94345 * 179.97438 * 15 14 13 17 17 C 1.50704 * 126.50078 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.46836 * 104.97476 * 17 16 15 19 19 Si 1.86295 * 109.47128 * 344.97443 * 17 16 15 20 20 H 1.48500 * 109.47070 * 60.00092 * 19 17 16 21 21 H 1.48501 * 109.47243 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47234 * 300.00131 * 19 17 16 23 23 C 1.46487 * 106.99387 * 359.97438 * 16 15 14 24 24 C 1.39596 * 134.03335 * 180.02562 * 23 16 15 25 25 C 1.36665 * 119.76280 * 179.97438 * 24 23 16 26 26 C 1.38787 * 120.53031 * 0.02562 * 25 24 23 27 27 C 1.37788 * 120.66478 * 359.97438 * 26 25 24 28 28 C 1.37692 * 125.06410 * 84.71785 * 14 13 11 29 29 C 1.38232 * 120.00083 * 0.24513 * 8 7 6 30 30 C 1.38234 * 119.99903 * 270.02341 * 5 2 1 31 31 H 1.08999 * 109.47015 * 300.00220 * 1 2 3 32 32 H 1.09007 * 109.46923 * 59.99765 * 1 2 3 33 33 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.46666 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46674 * 300.00081 * 3 2 1 36 36 H 1.09005 * 109.46844 * 59.99980 * 3 2 1 37 37 H 1.08993 * 109.47658 * 300.00446 * 4 2 1 38 38 H 1.08999 * 109.47536 * 60.00543 * 4 2 1 39 39 H 1.09000 * 109.46908 * 179.97438 * 4 2 1 40 40 H 1.07996 * 120.00390 * 0.02562 * 6 5 2 41 41 H 1.08008 * 119.99809 * 179.97438 * 7 6 5 42 42 H 1.08995 * 109.46956 * 329.99278 * 9 8 7 43 43 H 1.09001 * 109.46317 * 209.99724 * 9 8 7 44 44 H 0.97000 * 120.00580 * 0.02562 * 10 9 8 45 45 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 46 46 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 47 47 H 1.08010 * 125.02566 * 359.95763 * 15 14 13 48 48 H 1.09001 * 109.46395 * 224.97588 * 17 16 15 49 49 H 0.96696 * 114.00171 * 299.99575 * 18 17 16 50 50 H 1.07998 * 120.12193 * 359.97438 * 24 23 16 51 51 H 1.08000 * 119.73803 * 180.02562 * 25 24 23 52 52 H 1.07996 * 119.66824 * 180.02562 * 26 25 24 53 53 H 1.08005 * 120.11288 * 180.02562 * 27 26 25 54 54 H 1.08000 * 119.99855 * 179.72380 * 29 8 7 55 55 H 1.07996 * 120.00199 * 359.97438 * 30 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7159 -2.2432 1.4910 7 6 3.1762 -2.8950 2.6199 8 6 3.4055 -2.1842 3.7831 9 6 3.9067 -2.8949 5.0139 10 7 5.3717 -2.8951 5.0152 11 6 6.0445 -3.4786 6.0268 12 8 5.4372 -4.0038 6.9358 13 6 7.5515 -3.4842 6.0251 14 7 8.0386 -4.1793 7.2192 15 6 8.3959 -3.5713 8.3918 16 6 8.7963 -4.4929 9.2819 17 6 9.2685 -4.2340 10.6894 18 8 8.2436 -4.6084 11.6121 19 14 9.6547 -2.4227 10.8916 20 1 8.4321 -1.6232 10.6247 21 1 10.1194 -2.1675 12.2787 22 1 10.7198 -2.0336 9.9326 23 6 8.6860 -5.7980 8.6259 24 6 8.9486 -7.1097 9.0248 25 6 8.7356 -8.1397 8.1521 26 6 8.2607 -7.8922 6.8717 27 6 7.9949 -6.6052 6.4574 28 6 8.1995 -5.5422 7.3307 29 6 3.1699 -0.8226 3.8189 30 6 2.7155 -0.1698 2.6883 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.5740 1.7563 0.0005 35 1 2.1207 2.2702 -0.8900 36 1 2.1207 2.2702 0.8900 37 1 2.1206 -1.9059 -1.5211 38 1 2.1207 -0.3645 -2.4111 39 1 3.5739 -0.8779 -1.5213 40 1 2.5363 -2.7986 0.5823 41 1 3.3557 -3.9597 2.5933 42 1 3.5432 -3.9224 5.0134 43 1 3.5426 -2.3811 5.9036 44 1 5.8575 -2.4747 4.2884 45 1 7.9119 -3.9975 5.1335 46 1 7.9187 -2.4580 6.0269 47 1 8.3611 -2.5073 8.5741 48 1 10.1659 -4.8209 10.8852 49 1 7.4142 -4.1251 11.4960 50 1 9.3187 -7.3100 10.0194 51 1 8.9386 -9.1544 8.4612 52 1 8.0970 -8.7166 6.1936 53 1 7.6251 -6.4229 5.4591 54 1 3.3448 -0.2681 4.7290 55 1 2.5356 0.8948 2.7151 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_9818708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:20:12 Heat of formation + Delta-G solvation = -16.627964 kcal Electronic energy + Delta-G solvation = -33268.759531 eV Core-core repulsion = 28973.545104 eV Total energy + Delta-G solvation = -4295.214427 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 396.178 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.55708 -40.89631 -39.88802 -38.10999 -37.63407 -36.08239 -34.14355 -32.49499 -31.87457 -31.35934 -30.25502 -29.48187 -29.06681 -28.29075 -28.27788 -26.93373 -25.48445 -23.75439 -23.46735 -22.75191 -22.09996 -21.71656 -20.68951 -18.90338 -18.50931 -17.89934 -17.51829 -17.21837 -16.72434 -16.68677 -16.41809 -16.11038 -15.91984 -15.84178 -15.55793 -15.31879 -14.84480 -14.75411 -14.53177 -14.39989 -14.35141 -14.16389 -14.03325 -13.98951 -13.91072 -13.72797 -13.62831 -13.46004 -13.15877 -13.15325 -13.10871 -12.96840 -12.71725 -12.67287 -12.58236 -12.34056 -12.15486 -11.93648 -11.91061 -11.68747 -11.33374 -10.91067 -10.77289 -10.75687 -10.57135 -10.31102 -10.28128 -9.80731 -9.67336 -9.17258 -8.64339 0.11597 0.18340 0.51852 0.64037 1.21825 1.37351 1.39776 1.48482 1.58014 1.67786 1.84590 1.94751 2.02956 2.03504 2.26586 2.66653 2.93157 2.97807 3.54206 3.61724 3.63537 3.68124 3.74222 3.80514 3.88492 4.02962 4.10080 4.14639 4.21731 4.29281 4.31946 4.51078 4.54241 4.57339 4.59779 4.71426 4.74020 4.78331 4.83473 4.83785 4.88268 4.89648 4.89934 4.89967 4.90471 5.00133 5.13797 5.16990 5.19518 5.40157 5.50487 5.58233 5.59022 5.61394 5.66212 5.67266 5.71545 5.73271 5.74651 6.11836 6.15289 6.21802 6.39672 6.75238 7.03735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.129 2.871 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.372 4.372 6 C -0.100 4.100 7 C -0.122 4.122 8 C -0.106 4.106 9 C 0.167 3.833 10 N -0.707 5.707 11 C 0.492 3.508 12 O -0.571 6.571 13 C 0.089 3.911 14 N -0.467 5.467 15 C 0.061 3.939 16 C -0.216 4.216 17 C -0.053 4.053 18 O -0.560 6.560 19 Si 0.992 3.008 20 H -0.247 1.247 21 H -0.273 1.273 22 H -0.249 1.249 23 C -0.114 4.114 24 C -0.084 4.084 25 C -0.154 4.154 26 C -0.106 4.106 27 C -0.137 4.137 28 C 0.090 3.910 29 C -0.121 4.121 30 C -0.100 4.100 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.418 0.582 45 H 0.144 0.856 46 H 0.161 0.839 47 H 0.192 0.808 48 H 0.110 0.890 49 H 0.384 0.616 50 H 0.124 0.876 51 H 0.138 0.862 52 H 0.145 0.855 53 H 0.131 0.869 54 H 0.127 0.873 55 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 5.753 -8.142 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.316 2.684 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.118 4.118 7 C -0.141 4.141 8 C -0.106 4.106 9 C 0.043 3.957 10 N -0.361 5.361 11 C 0.277 3.723 12 O -0.449 6.449 13 C -0.036 4.036 14 N -0.150 5.150 15 C -0.064 4.064 16 C -0.224 4.224 17 C -0.162 4.162 18 O -0.366 6.366 19 Si 0.814 3.186 20 H -0.171 1.171 21 H -0.197 1.197 22 H -0.173 1.173 23 C -0.119 4.119 24 C -0.103 4.103 25 C -0.173 4.173 26 C -0.125 4.125 27 C -0.157 4.157 28 C -0.015 4.015 29 C -0.140 4.140 30 C -0.118 4.118 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.155 0.845 41 H 0.143 0.857 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.255 0.745 45 H 0.162 0.838 46 H 0.179 0.821 47 H 0.208 0.792 48 H 0.128 0.872 49 H 0.232 0.768 50 H 0.142 0.858 51 H 0.156 0.844 52 H 0.163 0.837 53 H 0.148 0.852 54 H 0.145 0.855 55 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.667 5.996 -7.392 9.541 hybrid contribution -0.611 -0.359 -0.195 0.734 sum 0.057 5.637 -7.587 9.452 Atomic orbital electron populations 1.26353 1.22191 1.04332 1.04454 0.77117 0.64787 0.64671 0.61824 1.26278 1.06537 1.19330 1.04785 1.26286 1.06532 1.08421 1.15741 1.27933 1.02519 0.99611 1.11106 1.21374 0.97065 0.95096 0.98257 1.21340 0.99556 1.00195 0.93007 1.19763 1.02011 0.94329 0.94533 1.20072 0.79949 0.99983 0.95658 1.45904 1.06785 1.58202 1.25189 1.21472 0.91248 0.77798 0.81765 1.90805 1.70796 1.45847 1.37429 1.21955 0.89869 1.02931 0.88844 1.43417 1.55240 1.04016 1.12323 1.21989 1.00440 0.99043 0.84910 1.20852 1.12345 0.91542 0.97651 1.24531 0.93517 1.13781 0.84399 1.86459 1.25905 1.68254 1.56028 0.85158 0.80848 0.72563 0.80045 1.17075 1.19746 1.17268 1.19324 1.04813 0.93994 0.93728 1.20485 0.99148 0.90822 0.99841 1.20934 1.02448 0.99598 0.94278 1.21135 0.98587 0.96121 0.96655 1.20239 1.05172 0.90967 0.99324 1.18431 1.02621 0.84217 0.96251 1.21340 0.99502 0.93818 0.99333 1.21379 0.97063 1.00720 0.92608 0.91525 0.90836 0.91554 0.91057 0.90848 0.90969 0.91014 0.90852 0.91074 0.84544 0.85707 0.91779 0.91514 0.74472 0.83824 0.82139 0.79152 0.87192 0.76781 0.85841 0.84403 0.83699 0.85154 0.85533 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.21 8.65 113.37 0.98 3.19 16 2 Si 1.13 -9.01 12.32 68.60 0.85 -8.16 16 3 C -0.46 3.03 8.53 113.37 0.97 4.00 16 4 C -0.46 2.97 8.53 113.37 0.97 3.94 16 5 C -0.37 1.50 4.59 22.27 0.10 1.60 16 6 C -0.10 0.30 9.29 22.27 0.21 0.51 16 7 C -0.12 0.22 9.70 22.27 0.22 0.44 16 8 C -0.11 0.17 5.25 -19.86 -0.10 0.06 16 9 C 0.17 -0.04 5.80 85.64 0.50 0.46 16 10 N -0.71 2.70 5.55 -466.79 -2.59 0.11 16 11 C 0.49 0.53 7.90 87.66 0.69 1.22 16 12 O -0.57 -7.15 16.42 -3.04 -0.05 -7.20 16 13 C 0.09 -0.45 6.48 85.63 0.56 0.11 16 14 N -0.47 -1.62 2.27 -519.98 -1.18 -2.80 16 15 C 0.06 0.19 9.89 83.00 0.82 1.01 16 16 C -0.22 -1.45 5.58 -18.63 -0.10 -1.55 16 17 C -0.05 -0.21 3.06 71.24 0.22 0.01 16 18 O -0.56 -3.73 12.88 -148.98 -1.92 -5.65 16 19 Si 0.99 -0.17 26.08 68.60 1.79 1.62 16 20 H -0.25 0.37 7.03 99.48 0.70 1.07 16 21 H -0.27 -0.90 7.11 99.48 0.71 -0.20 16 22 H -0.25 0.11 7.11 99.48 0.71 0.82 16 23 C -0.11 -1.21 6.35 -20.20 -0.13 -1.34 16 24 C -0.08 -0.81 10.05 22.23 0.22 -0.59 16 25 C -0.15 -1.05 9.97 22.03 0.22 -0.83 16 26 C -0.11 -0.58 10.01 22.29 0.22 -0.35 16 27 C -0.14 -0.86 10.00 22.37 0.22 -0.63 16 28 C 0.09 0.76 6.79 39.03 0.27 1.03 16 29 C -0.12 0.26 9.70 22.27 0.22 0.47 16 30 C -0.10 0.32 9.29 22.27 0.21 0.53 16 31 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 32 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 35 H 0.07 -0.47 7.96 -2.39 -0.02 -0.48 16 36 H 0.07 -0.49 7.69 -2.38 -0.02 -0.51 16 37 H 0.07 -0.47 7.69 -2.39 -0.02 -0.49 16 38 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 39 H 0.07 -0.44 7.96 -2.39 -0.02 -0.45 16 40 H 0.14 -0.88 7.43 -2.91 -0.02 -0.90 16 41 H 0.12 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.06 0.17 8.09 -2.39 -0.02 0.15 16 43 H 0.07 0.14 8.08 -2.39 -0.02 0.12 16 44 H 0.42 -4.05 8.46 -92.71 -0.78 -4.84 16 45 H 0.14 -1.45 8.14 -2.38 -0.02 -1.47 16 46 H 0.16 -2.08 8.12 -2.39 -0.02 -2.10 16 47 H 0.19 -0.66 6.29 -2.91 -0.02 -0.68 16 48 H 0.11 0.37 7.96 -2.39 -0.02 0.35 16 49 H 0.38 0.41 8.70 -74.06 -0.64 -0.24 16 50 H 0.12 0.99 8.06 -2.91 -0.02 0.97 16 51 H 0.14 0.34 8.06 -2.91 -0.02 0.32 16 52 H 0.15 0.04 8.06 -2.91 -0.02 0.01 16 53 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 54 H 0.13 -0.51 8.06 -2.91 -0.02 -0.54 16 55 H 0.14 -0.94 7.43 -2.91 -0.02 -0.96 16 Total: 0.00 -25.55 460.35 4.58 -20.97 By element: Atomic # 1 Polarization: -12.39 SS G_CDS: 0.22 Total: -12.17 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 7.47 Total: 13.29 kcal Atomic # 7 Polarization: 1.08 SS G_CDS: -3.77 Total: -2.69 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -1.97 Total: -12.85 kcal Atomic # 14 Polarization: -9.18 SS G_CDS: 2.63 Total: -6.55 kcal Total: -25.55 4.58 -20.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_9818708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.343 kcal (2) G-P(sol) polarization free energy of solvation -25.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds