Wall clock time and date at job start Tue Mar 9 2021 14:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35983 * 117.00135 * 2 1 4 4 C 1.38673 * 119.99754 * 179.97438 * 3 2 1 5 5 C 1.38155 * 119.99689 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.99666 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.46671 * 104.98288 * 6 5 4 8 8 Si 1.86291 * 109.47352 * 344.98214 * 6 5 4 9 9 C 1.38677 * 120.00221 * 0.02562 * 5 4 3 10 10 O 1.35985 * 119.99986 * 180.02562 * 9 5 4 11 11 C 1.42902 * 116.99599 * 179.97438 * 10 9 5 12 12 C 1.50699 * 109.46585 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00610 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99665 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99919 * 179.97438 * 14 12 11 16 16 H 1.09006 * 112.85317 * 336.20205 * 15 14 12 17 17 C 1.53788 * 113.69020 * 107.46473 * 15 14 12 18 18 C 1.53780 * 87.07911 * 89.12630 * 17 15 14 19 19 H 1.08994 * 113.69256 * 270.87835 * 18 17 15 20 20 C 1.50702 * 113.61135 * 139.98074 * 18 17 15 21 21 C 1.38123 * 119.96824 * 142.50712 * 20 18 17 22 22 C 1.38760 * 119.94204 * 180.02562 * 21 20 18 23 23 O 1.35891 * 120.05416 * 180.02562 * 22 21 20 24 24 C 1.42901 * 116.99958 * 179.97438 * 23 22 21 25 25 F 1.39903 * 109.47153 * 60.00031 * 24 23 22 26 26 F 1.39900 * 109.47363 * 180.02562 * 24 23 22 27 27 F 1.39900 * 109.47210 * 300.00465 * 24 23 22 28 28 C 1.38714 * 119.88696 * 359.97438 * 22 21 20 29 29 C 1.38161 * 119.94312 * 0.25907 * 28 22 21 30 30 C 1.38250 * 120.05761 * 359.46537 * 29 28 22 31 31 C 1.53776 * 113.61907 * 204.99919 * 15 14 12 32 32 C 1.38714 * 119.99495 * 0.26895 * 9 5 4 33 33 C 1.38111 * 120.00647 * 359.45271 * 32 9 5 34 34 H 1.08997 * 109.47123 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.46443 * 299.99749 * 1 2 3 36 36 H 1.08997 * 109.46925 * 59.99659 * 1 2 3 37 37 H 1.07998 * 120.00285 * 0.04556 * 4 3 2 38 38 H 1.08997 * 109.47090 * 224.97848 * 6 5 4 39 39 H 0.96705 * 114.00122 * 59.99814 * 7 6 5 40 40 H 1.48505 * 110.00011 * 178.67698 * 8 6 5 41 41 H 1.48502 * 110.00458 * 299.99761 * 8 6 5 42 42 H 1.08996 * 109.47005 * 60.00289 * 11 10 9 43 43 H 1.08999 * 109.47000 * 299.99864 * 11 10 9 44 44 H 0.96995 * 119.99944 * 0.02562 * 14 12 11 45 45 H 1.09005 * 113.60957 * 334.57947 * 17 15 14 46 46 H 1.09000 * 113.61491 * 203.67535 * 17 15 14 47 47 H 1.07992 * 120.03265 * 0.02562 * 21 20 18 48 48 H 1.08002 * 120.02359 * 179.97438 * 28 22 21 49 49 H 1.07998 * 119.97295 * 179.74769 * 29 28 22 50 50 H 1.08001 * 119.94284 * 180.25991 * 30 29 28 51 51 H 1.08997 * 113.61526 * 156.24886 * 31 15 14 52 52 H 1.09004 * 113.61058 * 25.34951 * 31 15 14 53 53 H 1.08004 * 119.99717 * 179.70436 * 32 9 5 54 54 H 1.08000 * 120.00555 * 180.25184 * 33 32 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4313 1.2841 0.0005 5 6 4.0585 2.5151 0.0011 6 6 5.5635 2.5938 0.0011 7 8 6.0208 2.9671 -1.3003 8 14 6.2724 0.9320 0.4554 9 6 3.3033 3.6781 0.0016 10 8 3.9207 4.8897 0.0016 11 6 3.0807 6.0458 0.0016 12 6 3.9350 7.2873 0.0022 13 8 5.1441 7.1916 0.0022 14 7 3.3554 8.5041 0.0018 15 6 4.1858 9.7110 0.0030 16 1 5.1825 9.5387 0.4094 17 6 4.1894 10.4599 -1.3402 18 6 2.9675 11.2359 -0.8211 19 1 2.0153 10.7563 -1.0479 20 6 2.9855 12.6997 -1.1789 21 6 1.8096 13.3429 -1.5126 22 6 1.8269 14.6906 -1.8425 23 8 0.6713 15.3258 -2.1707 24 6 0.7643 16.7136 -2.4986 25 9 1.6092 16.8765 -3.6017 26 9 -0.5080 17.2059 -2.8085 27 9 1.2829 17.4171 -1.4062 28 6 3.0256 15.3886 -1.8356 29 6 4.1997 14.7394 -1.5056 30 6 4.1790 13.3980 -1.1719 31 6 3.4824 10.9423 0.5979 32 6 1.9181 3.6055 0.0072 33 6 1.2909 2.3750 0.0009 34 1 -0.3633 -1.0276 0.0005 35 1 -0.3632 0.5138 0.8901 36 1 -0.3633 0.5139 -0.8899 37 1 4.0195 0.3783 0.0002 38 1 5.8883 3.3384 0.7278 39 1 5.6902 3.8242 -1.6025 40 1 7.7561 0.9880 0.4279 41 1 5.8042 0.5323 1.8068 42 1 2.4515 6.0377 0.8916 43 1 2.4515 6.0377 -0.8884 44 1 2.3885 8.5807 0.0015 45 1 3.9700 9.8219 -2.1963 46 1 5.0710 11.0831 -1.4903 47 1 0.8775 12.7975 -1.5169 48 1 3.0416 16.4375 -2.0923 49 1 5.1338 15.2814 -1.5041 50 1 5.0973 12.8934 -0.9102 51 1 4.1707 11.6973 0.9777 52 1 2.6922 10.6938 1.3064 53 1 1.3298 4.5113 0.0125 54 1 0.2124 2.3185 0.0012 There are 83 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 83 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10860230_4974302.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:20 Heat of formation + Delta-G solvation = -240.420767 kcal Electronic energy + Delta-G solvation = -43801.464320 eV Core-core repulsion = 37450.458159 eV Total energy + Delta-G solvation = -6351.006160 eV No. of doubly occupied orbitals = 83 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 454.153 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -51.55445 -49.27259 -49.15292 -41.93000 -41.66466 -41.05601 -40.21454 -39.55692 -38.29406 -37.96991 -36.91972 -34.67426 -32.81447 -32.29745 -31.39530 -30.90741 -29.37529 -27.95713 -27.25957 -26.68883 -26.58942 -26.05883 -24.01124 -23.80402 -22.98817 -22.40952 -21.89870 -21.03230 -20.27225 -20.13982 -19.73722 -19.49136 -18.81621 -18.49906 -18.10055 -17.90474 -17.48195 -17.41283 -17.15506 -16.96367 -16.60304 -16.40841 -16.36439 -16.09862 -15.95147 -15.90594 -15.69545 -15.62944 -15.56388 -15.53250 -15.44113 -15.29984 -15.26691 -15.25330 -14.90755 -14.55000 -14.42186 -14.23614 -14.17244 -14.08116 -13.91727 -13.54502 -13.50240 -13.42038 -13.03433 -12.94907 -12.82760 -12.70917 -12.50192 -12.30139 -12.02850 -11.83699 -11.71939 -11.43859 -11.31186 -11.30532 -11.23086 -11.00488 -10.17428 -10.09087 -9.93202 -9.59045 -8.81653 -4.93255 0.07076 0.08705 0.21598 0.33969 0.36595 1.33851 1.41580 1.43593 1.58319 1.72806 1.91600 2.35581 2.48259 2.54635 2.57521 2.66132 2.88351 3.42269 3.47027 3.54989 3.57533 3.60047 3.67828 3.74745 3.86113 3.87235 3.92429 3.95797 4.04126 4.08923 4.10241 4.14055 4.18097 4.21774 4.27375 4.28412 4.40762 4.45529 4.46296 4.63299 4.71052 4.77964 4.80441 4.83141 4.87036 4.95565 4.97953 4.99254 5.03223 5.12822 5.12880 5.21467 5.25030 5.34597 5.41552 5.45399 5.61676 5.87477 6.13478 6.41194 6.46821 6.52730 7.11473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.090 3.910 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.080 4.080 7 O -0.545 6.545 8 Si 0.809 3.191 9 C 0.090 3.910 10 O -0.316 6.316 11 C 0.037 3.963 12 C 0.516 3.484 13 O -0.569 6.569 14 N -0.692 5.692 15 C 0.115 3.885 16 H 0.084 0.916 17 C -0.142 4.142 18 C -0.065 4.065 19 H 0.120 0.880 20 C -0.035 4.035 21 C -0.126 4.126 22 C 0.084 3.916 23 O -0.319 6.319 24 C 0.608 3.392 25 F -0.166 7.166 26 F -0.133 7.133 27 F -0.166 7.166 28 C -0.208 4.208 29 C -0.081 4.081 30 C -0.134 4.134 31 C -0.123 4.123 32 C -0.159 4.159 33 C -0.162 4.162 34 H 0.114 0.886 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.152 0.848 38 H 0.062 0.938 39 H 0.372 0.628 40 H -0.294 1.294 41 H -0.264 1.264 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.421 0.579 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.151 0.849 48 H 0.130 0.870 49 H 0.150 0.850 50 H 0.149 0.851 51 H 0.102 0.898 52 H 0.092 0.908 53 H 0.168 0.832 54 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 0.162 0.791 8.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.045 3.955 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.188 4.188 7 O -0.351 6.351 8 Si 0.710 3.290 9 C 0.045 3.955 10 O -0.230 6.230 11 C -0.041 4.041 12 C 0.302 3.698 13 O -0.447 6.447 14 N -0.346 5.346 15 C 0.010 3.990 16 H 0.102 0.898 17 C -0.180 4.180 18 C -0.083 4.083 19 H 0.138 0.862 20 C -0.035 4.035 21 C -0.144 4.144 22 C 0.042 3.958 23 O -0.239 6.239 24 C 0.517 3.483 25 F -0.148 7.148 26 F -0.114 7.114 27 F -0.148 7.148 28 C -0.227 4.227 29 C -0.098 4.098 30 C -0.152 4.152 31 C -0.161 4.161 32 C -0.177 4.177 33 C -0.180 4.180 34 H 0.132 0.868 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.169 0.831 38 H 0.080 0.920 39 H 0.220 0.780 40 H -0.222 1.222 41 H -0.190 1.190 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.260 0.740 45 H 0.090 0.910 46 H 0.117 0.883 47 H 0.169 0.831 48 H 0.148 0.852 49 H 0.168 0.832 50 H 0.167 0.833 51 H 0.121 0.879 52 H 0.111 0.889 53 H 0.186 0.814 54 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.632 -1.086 1.374 6.860 hybrid contribution -0.916 2.710 0.114 2.863 sum -7.549 1.624 1.488 7.863 Atomic orbital electron populations 1.23356 0.76380 1.05607 1.02373 1.86089 1.23395 1.26352 1.88938 1.18985 0.91941 0.85371 0.99209 1.20181 0.92434 0.96794 1.04280 1.19453 0.96004 0.91021 1.05522 1.25491 0.92843 1.12425 0.88012 1.86662 1.74215 1.42250 1.31999 0.92226 0.76268 0.79129 0.81337 1.18783 0.91718 0.84234 1.00746 1.86085 1.35544 1.11927 1.89449 1.22727 0.92632 0.81849 1.06887 1.20511 0.88300 0.85419 0.75526 1.90778 1.16737 1.87310 1.49915 1.45336 1.11144 1.03630 1.74507 1.21847 0.95542 0.83864 0.97793 0.89779 1.23578 0.98673 0.98446 0.97322 1.21669 1.00206 0.89578 0.96869 0.86173 1.19691 0.91631 0.95970 0.96175 1.20534 1.00542 0.90239 1.03123 1.18974 0.82828 0.93222 1.00769 1.86396 1.34004 1.20023 1.83495 1.19274 0.74550 0.79442 0.75025 1.93306 1.71427 1.95259 1.54806 1.93319 1.39152 1.86190 1.92724 1.93305 1.86722 1.79643 1.55088 1.21680 0.92902 1.01130 1.06949 1.21238 0.97778 0.94995 0.95830 1.21374 0.98904 0.94134 1.00797 1.23391 1.00918 0.95908 0.95868 1.21375 0.92039 1.00025 1.04295 1.21424 1.01592 0.90941 1.04052 0.86777 0.91534 0.91387 0.83134 0.92018 0.77967 1.22182 1.18988 0.85916 0.85539 0.74043 0.90992 0.88264 0.83136 0.85181 0.83246 0.83345 0.87922 0.88903 0.81434 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.58 10.50 -93.36 -0.98 -1.56 16 3 C 0.09 0.19 6.69 22.49 0.15 0.34 16 4 C -0.12 -0.47 8.59 22.35 0.19 -0.28 16 5 C -0.12 -0.64 5.27 -19.78 -0.10 -0.75 16 6 C -0.08 -0.61 2.33 71.24 0.17 -0.45 16 7 O -0.55 -5.13 12.65 -148.98 -1.89 -7.01 16 8 Si 0.81 4.11 30.17 68.60 2.07 6.18 16 9 C 0.09 0.23 6.62 22.49 0.15 0.38 16 10 O -0.32 -1.06 8.56 -74.34 -0.64 -1.69 16 11 C 0.04 -0.22 5.22 71.24 0.37 0.16 16 12 C 0.52 -0.16 7.91 87.66 0.69 0.53 16 13 O -0.57 -6.57 16.10 16.00 0.26 -6.31 16 14 N -0.69 5.24 5.27 -440.02 -2.32 2.93 16 15 C 0.12 -0.64 4.32 45.52 0.20 -0.45 16 16 H 0.08 0.00 7.47 -2.38 -0.02 -0.01 16 17 C -0.14 0.93 7.25 31.12 0.23 1.16 16 18 C -0.07 0.60 3.86 -11.01 -0.04 0.55 16 19 H 0.12 -1.51 8.09 -2.39 -0.02 -1.53 16 20 C -0.03 0.17 5.29 -19.88 -0.11 0.06 16 21 C -0.13 0.27 9.65 22.37 0.22 0.48 16 22 C 0.08 0.15 6.48 22.51 0.15 0.29 16 23 O -0.32 -1.03 10.37 -92.33 -0.96 -1.99 16 24 C 0.61 1.43 3.42 113.37 0.39 1.82 16 25 F -0.17 -0.44 15.56 44.97 0.70 0.26 16 26 F -0.13 -0.36 17.53 44.97 0.79 0.43 16 27 F -0.17 -0.41 15.56 44.97 0.70 0.29 16 28 C -0.21 -0.18 8.26 22.37 0.18 0.00 16 29 C -0.08 0.20 10.04 22.25 0.22 0.42 16 30 C -0.13 0.60 8.60 22.28 0.19 0.79 16 31 C -0.12 1.17 7.29 31.12 0.23 1.39 16 32 C -0.16 0.53 9.03 22.35 0.20 0.73 16 33 C -0.16 0.42 9.03 22.35 0.20 0.62 16 34 H 0.11 -1.00 8.14 -2.39 -0.02 -1.02 16 35 H 0.07 -0.56 7.66 -2.38 -0.02 -0.58 16 36 H 0.07 -0.58 7.66 -2.39 -0.02 -0.60 16 37 H 0.15 0.20 5.13 -2.91 -0.01 0.18 16 38 H 0.06 0.62 7.82 -2.39 -0.02 0.61 16 39 H 0.37 2.52 8.60 -74.05 -0.64 1.89 16 40 H -0.29 -3.36 7.11 99.48 0.71 -2.65 16 41 H -0.26 -1.85 7.11 99.48 0.71 -1.15 16 42 H 0.12 -1.45 7.65 -2.39 -0.02 -1.47 16 43 H 0.13 -1.56 7.67 -2.39 -0.02 -1.58 16 44 H 0.42 -6.37 8.70 -92.71 -0.81 -7.18 16 45 H 0.07 -0.35 8.14 -2.38 -0.02 -0.37 16 46 H 0.10 -0.65 6.31 -2.39 -0.02 -0.67 16 47 H 0.15 -0.84 8.05 -2.91 -0.02 -0.86 16 48 H 0.13 0.09 5.10 -2.91 -0.01 0.07 16 49 H 0.15 -0.93 8.06 -2.91 -0.02 -0.95 16 50 H 0.15 -1.20 6.65 -2.91 -0.02 -1.22 16 51 H 0.10 -0.93 7.72 -2.39 -0.02 -0.95 16 52 H 0.09 -1.06 8.14 -2.38 -0.02 -1.08 16 53 H 0.17 -1.88 6.29 -2.91 -0.02 -1.90 16 54 H 0.16 -1.34 6.29 -2.91 -0.02 -1.36 16 Total: 0.00 -26.40 456.82 2.34 -24.06 By element: Atomic # 1 Polarization: -24.01 SS G_CDS: -0.38 Total: -24.39 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 4.99 Total: 8.82 kcal Atomic # 7 Polarization: 5.24 SS G_CDS: -2.32 Total: 2.93 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -4.20 Total: -18.57 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 2.19 Total: 0.98 kcal Atomic # 14 Polarization: 4.11 SS G_CDS: 2.07 Total: 6.18 kcal Total: -26.40 2.34 -24.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10860230_4974302.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.357 kcal (2) G-P(sol) polarization free energy of solvation -26.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds