Wall clock time and date at job start Tue Mar 9 2021 12:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47126 * 2 1 4 4 O 1.42905 * 109.47287 * 119.99639 * 2 1 3 5 5 C 1.42896 * 113.99793 * 89.99930 * 4 2 1 6 6 H 1.09001 * 112.84834 * 18.81205 * 5 4 2 7 7 C 1.53786 * 113.61228 * 150.00253 * 5 4 2 8 8 C 1.53782 * 87.07933 * 140.06615 * 7 5 4 9 9 H 1.09001 * 113.61244 * 89.19752 * 8 7 5 10 10 N 1.46501 * 113.61260 * 220.01697 * 8 7 5 11 11 C 1.34773 * 120.00023 * 203.46920 * 10 8 7 12 12 O 1.21286 * 119.99764 * 0.02562 * 11 10 8 13 13 C 1.50699 * 120.00279 * 179.97438 * 11 10 8 14 14 N 1.46499 * 109.47361 * 180.02562 * 13 11 10 15 15 C 1.36833 * 125.06343 * 265.02803 * 14 13 11 16 16 C 1.34234 * 109.93968 * 180.02562 * 15 14 13 17 17 C 1.50701 * 126.50041 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.47223 * 254.97775 * 17 16 15 19 19 Si 1.86305 * 109.47226 * 14.97540 * 17 16 15 20 20 C 1.46487 * 106.99693 * 0.02562 * 16 15 14 21 21 C 1.39593 * 134.03364 * 180.02562 * 20 16 15 22 22 C 1.36656 * 119.76666 * 179.97438 * 21 20 16 23 23 C 1.38798 * 120.52612 * 0.02562 * 22 21 20 24 24 C 1.37785 * 120.66545 * 359.97438 * 23 22 21 25 25 C 1.37685 * 125.06304 * 85.04975 * 14 13 11 26 26 C 1.53781 * 87.17336 * 334.61052 * 8 7 5 27 27 H 1.09001 * 109.47378 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47431 * 300.00379 * 1 2 3 29 29 H 1.09005 * 109.47387 * 60.00146 * 1 2 3 30 30 H 1.08995 * 109.47543 * 240.00090 * 2 1 3 31 31 H 1.08996 * 109.47475 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47072 * 299.99668 * 3 2 1 33 33 H 1.09000 * 109.47274 * 59.99525 * 3 2 1 34 34 H 1.08999 * 113.61427 * 25.51831 * 7 5 4 35 35 H 1.08999 * 113.60952 * 254.61661 * 7 5 4 36 36 H 0.96998 * 119.99938 * 23.47039 * 10 8 7 37 37 H 1.09003 * 109.46933 * 60.00490 * 13 11 10 38 38 H 1.09000 * 109.47246 * 300.00435 * 13 11 10 39 39 H 1.08005 * 125.02815 * 0.28487 * 15 14 13 40 40 H 1.09001 * 109.47210 * 134.97481 * 17 16 15 41 41 H 0.96700 * 114.00275 * 179.97438 * 18 17 16 42 42 H 1.48500 * 109.99672 * 300.00139 * 19 17 16 43 43 H 1.48503 * 109.99625 * 61.31828 * 19 17 16 44 44 H 1.07999 * 120.11612 * 359.94294 * 21 20 16 45 45 H 1.08000 * 119.74252 * 179.97438 * 22 21 20 46 46 H 1.07995 * 119.66320 * 179.97438 * 23 22 21 47 47 H 1.07996 * 120.11040 * 180.02562 * 24 23 22 48 48 H 1.09001 * 113.61272 * 139.93758 * 26 8 7 49 49 H 1.09001 * 113.61315 * 270.83965 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0781 0.9887 6 1 2.2732 -2.3656 -0.0601 7 6 3.3194 -2.6618 1.8670 8 6 2.4070 -3.8808 2.0824 9 1 2.5378 -4.6618 1.3334 10 7 2.4317 -4.3973 3.4532 11 6 2.0932 -5.6789 3.6966 12 8 1.7686 -6.4048 2.7807 13 6 2.1191 -6.2105 5.1065 14 7 1.7138 -7.6183 5.1052 15 6 0.4432 -8.0706 5.3360 16 6 0.4141 -9.4107 5.2631 17 6 -0.7926 -10.2929 5.4550 18 8 -0.7192 -10.9290 6.7325 19 14 -2.3392 -9.2580 5.3646 20 6 1.7777 -9.8529 4.9615 21 6 2.3725 -11.1007 4.7675 22 6 3.7087 -11.1800 4.4924 23 6 4.4799 -10.0293 4.4048 24 6 3.9133 -8.7876 4.5928 25 6 2.5547 -8.6833 4.8721 26 6 1.2193 -2.9466 1.7974 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 3.5048 -2.0892 2.7757 35 1 4.2317 -2.8910 1.3163 36 1 2.6917 -3.8169 4.1855 37 1 1.4306 -5.6343 5.7246 38 1 3.1284 -6.1237 5.5090 39 1 -0.4108 -7.4422 5.5418 40 1 -0.8165 -11.0511 4.6724 41 1 -1.4655 -11.5132 6.9245 42 1 -2.3187 -8.2203 6.4266 43 1 -2.4435 -8.6164 4.0294 44 1 1.7788 -12.0004 4.8350 45 1 4.1685 -12.1457 4.3428 46 1 5.5348 -10.1082 4.1871 47 1 4.5217 -7.8981 4.5222 48 1 0.4386 -3.4055 1.1906 49 1 0.8295 -2.4520 2.6871 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:54 Heat of formation + Delta-G solvation = -15.989137 kcal Electronic energy + Delta-G solvation = -29873.705250 eV Core-core repulsion = 25769.183856 eV Total energy + Delta-G solvation = -4104.521394 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.66186 -41.30723 -40.04392 -38.18981 -37.93553 -37.55677 -34.78244 -34.17677 -32.97601 -31.50148 -30.38155 -29.15696 -28.20324 -26.82088 -26.17035 -24.95017 -23.80563 -22.78928 -22.38079 -21.74929 -21.12629 -20.61561 -18.62996 -18.52937 -18.28105 -18.03245 -17.77027 -16.81671 -16.60492 -16.52664 -16.46616 -15.86334 -15.58175 -15.53391 -15.33975 -15.01564 -14.90938 -14.80799 -14.58831 -14.20904 -13.99548 -13.82716 -13.65108 -13.57504 -13.43465 -13.37325 -13.13797 -12.79035 -12.69548 -12.66011 -12.49727 -12.32254 -12.09765 -12.06796 -11.96226 -11.82855 -11.66482 -11.25261 -10.65346 -10.51937 -10.23759 -10.19650 -9.27137 -8.75059 -4.99819 0.03510 0.56107 1.27684 1.29323 1.30795 1.48101 1.67391 1.95931 2.03878 2.70907 2.88381 3.32251 3.42282 3.45345 3.47747 3.59612 3.65034 3.71196 3.78583 3.79953 3.92553 3.95351 3.99870 4.09218 4.17555 4.20495 4.21359 4.27279 4.34259 4.50935 4.58093 4.60172 4.63769 4.66918 4.69913 4.74464 4.81257 4.82567 4.85516 4.86896 4.92757 4.98482 5.06168 5.22469 5.26255 5.34998 5.43410 5.57548 5.64372 5.65090 6.02585 6.14216 6.27931 6.34241 6.98665 6.98676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 C -0.150 4.150 4 O -0.380 6.380 5 C 0.065 3.935 6 H 0.098 0.902 7 C -0.129 4.129 8 C 0.123 3.877 9 H 0.098 0.902 10 N -0.698 5.698 11 C 0.493 3.507 12 O -0.572 6.572 13 C 0.086 3.914 14 N -0.467 5.467 15 C 0.051 3.949 16 C -0.179 4.179 17 C -0.046 4.046 18 O -0.565 6.565 19 Si 0.786 3.214 20 C -0.119 4.119 21 C -0.082 4.082 22 C -0.151 4.151 23 C -0.101 4.101 24 C -0.137 4.137 25 C 0.089 3.911 26 C -0.165 4.165 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.421 0.579 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.174 0.826 40 H 0.075 0.925 41 H 0.399 0.601 42 H -0.281 1.281 43 H -0.302 1.302 44 H 0.129 0.871 45 H 0.145 0.855 46 H 0.151 0.849 47 H 0.134 0.866 48 H 0.063 0.937 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 3.424 0.872 3.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 C -0.207 4.207 4 O -0.299 6.299 5 C 0.006 3.994 6 H 0.116 0.884 7 C -0.167 4.167 8 C 0.017 3.983 9 H 0.116 0.884 10 N -0.351 5.351 11 C 0.279 3.721 12 O -0.450 6.450 13 C -0.038 4.038 14 N -0.150 5.150 15 C -0.074 4.074 16 C -0.187 4.187 17 C -0.155 4.155 18 O -0.374 6.374 19 Si 0.690 3.310 20 C -0.124 4.124 21 C -0.100 4.100 22 C -0.169 4.169 23 C -0.120 4.120 24 C -0.157 4.157 25 C -0.016 4.016 26 C -0.204 4.204 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.259 0.741 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.191 0.809 40 H 0.093 0.907 41 H 0.250 0.750 42 H -0.208 1.208 43 H -0.230 1.230 44 H 0.147 0.853 45 H 0.162 0.838 46 H 0.168 0.832 47 H 0.152 0.848 48 H 0.081 0.919 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.046 4.479 0.334 4.492 hybrid contribution 0.382 0.169 -0.285 0.506 sum 0.336 4.648 0.049 4.661 Atomic orbital electron populations 1.22313 0.95775 1.02156 1.02880 1.22345 0.93922 0.94310 0.87765 1.21888 1.01750 0.94096 1.03009 1.87948 1.85785 1.19697 1.36490 1.23565 0.96109 0.80639 0.99068 0.88437 1.23544 0.97513 0.94055 1.01601 1.22134 0.97318 0.94485 0.84319 0.88387 1.45742 1.68212 1.11091 1.10039 1.21408 0.76462 0.82439 0.91816 1.90789 1.48410 1.58478 1.47296 1.21987 1.07520 0.79781 0.94553 1.43381 1.06505 1.04995 1.60136 1.21712 0.87527 0.94808 1.03353 1.20050 0.93949 0.92789 1.11880 1.24218 1.02603 1.00456 0.88259 1.86482 1.51679 1.65444 1.33812 0.94290 0.80346 0.80094 0.76230 1.19349 0.93098 0.93663 1.06249 1.20502 0.95485 0.95656 0.98374 1.20989 0.93533 0.99757 1.02667 1.21203 1.00973 0.91157 0.98709 1.20273 0.90725 0.99416 1.05287 1.18495 0.93058 0.86642 1.03355 1.24015 0.97718 0.97144 1.01554 0.92935 0.92472 0.90568 0.91248 0.92045 0.89929 0.92386 0.87514 0.89134 0.74063 0.82856 0.83297 0.80944 0.90699 0.75032 1.20794 1.22954 0.85349 0.83758 0.83152 0.84824 0.91869 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.16 9.53 71.98 0.69 0.85 16 2 C 0.07 -0.05 3.33 30.59 0.10 0.05 16 3 C -0.15 0.28 9.56 71.98 0.69 0.97 16 4 O -0.38 -0.69 10.00 -148.98 -1.49 -2.19 16 5 C 0.06 -0.09 4.26 31.18 0.13 0.05 16 6 H 0.10 -0.27 7.45 -2.39 -0.02 -0.29 16 7 C -0.13 0.52 7.66 31.12 0.24 0.76 16 8 C 0.12 -0.11 4.21 45.52 0.19 0.08 16 9 H 0.10 0.36 7.50 -2.39 -0.02 0.34 16 10 N -0.70 2.28 5.36 -440.03 -2.36 -0.08 16 11 C 0.49 1.51 7.90 87.66 0.69 2.20 16 12 O -0.57 -8.30 16.04 -3.05 -0.05 -8.35 16 13 C 0.09 -0.17 6.48 85.63 0.55 0.39 16 14 N -0.47 -3.58 2.27 -519.99 -1.18 -4.76 16 15 C 0.05 0.49 9.89 83.00 0.82 1.31 16 16 C -0.18 -2.07 5.61 -18.63 -0.10 -2.17 16 17 C -0.05 -0.23 3.05 71.24 0.22 -0.02 16 18 O -0.56 -2.42 12.86 -148.98 -1.92 -4.34 16 19 Si 0.79 0.74 30.79 68.60 2.11 2.85 16 20 C -0.12 -1.60 6.35 -20.20 -0.13 -1.73 16 21 C -0.08 -0.84 10.05 22.23 0.22 -0.62 16 22 C -0.15 -1.02 9.97 22.03 0.22 -0.80 16 23 C -0.10 -0.57 10.01 22.30 0.22 -0.35 16 24 C -0.14 -1.02 10.00 22.37 0.22 -0.79 16 25 C 0.09 1.00 6.80 39.03 0.27 1.27 16 26 C -0.17 0.04 7.73 31.18 0.24 0.28 16 27 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.08 -0.23 8.14 -2.38 -0.02 -0.25 16 30 H 0.07 -0.18 7.42 -2.39 -0.02 -0.19 16 31 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.11 -0.59 8.11 -2.39 -0.02 -0.61 16 35 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.42 -4.32 8.71 -92.71 -0.81 -5.13 16 37 H 0.15 -1.33 8.12 -2.39 -0.02 -1.35 16 38 H 0.15 -1.18 8.14 -2.39 -0.02 -1.20 16 39 H 0.17 0.94 6.30 -2.91 -0.02 0.92 16 40 H 0.08 0.24 7.96 -2.39 -0.02 0.22 16 41 H 0.40 -2.79 8.74 -74.06 -0.65 -3.44 16 42 H -0.28 -1.46 7.04 99.48 0.70 -0.75 16 43 H -0.30 -2.54 7.11 99.48 0.71 -1.83 16 44 H 0.13 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.14 0.23 8.06 -2.91 -0.02 0.20 16 46 H 0.15 -0.03 8.06 -2.91 -0.02 -0.05 16 47 H 0.13 0.32 8.06 -2.91 -0.02 0.30 16 48 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 49 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: 0.00 -28.40 407.85 0.14 -28.26 By element: Atomic # 1 Polarization: -12.67 SS G_CDS: -0.47 Total: -13.13 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.49 Total: 1.73 kcal Atomic # 7 Polarization: -1.30 SS G_CDS: -3.54 Total: -4.84 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -3.45 Total: -14.87 kcal Atomic # 14 Polarization: 0.74 SS G_CDS: 2.11 Total: 2.85 kcal Total: -28.40 0.14 -28.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.267 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds