Wall clock time and date at job start Tue Mar 9 2021 12:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46679 * 2 1 4 4 C 1.42902 * 113.99750 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.85201 * 341.19868 * 4 3 2 6 6 C 1.53785 * 113.68947 * 112.46676 * 4 3 2 7 7 C 1.53778 * 87.08391 * 139.99277 * 6 4 3 8 8 H 1.08998 * 113.68919 * 89.12384 * 7 6 4 9 9 N 1.46497 * 113.61546 * 220.02035 * 7 6 4 10 10 C 1.34775 * 119.99735 * 252.49517 * 9 7 6 11 11 O 1.21274 * 120.00383 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99985 * 180.02562 * 10 9 7 13 13 O 1.42896 * 109.47206 * 180.02562 * 12 10 9 14 14 C 1.35900 * 116.99681 * 179.97438 * 13 12 10 15 15 C 1.38718 * 120.05480 * 180.02562 * 14 13 12 16 16 N 1.48004 * 120.02562 * 359.97438 * 15 14 13 17 17 O 1.21801 * 120.00254 * 180.02562 * 16 15 14 18 18 O 1.21802 * 120.00195 * 359.97438 * 16 15 14 19 19 C 1.38165 * 119.94629 * 179.70593 * 15 14 13 20 20 C 1.38249 * 120.05169 * 0.54808 * 19 15 14 21 21 C 1.50702 * 119.94279 * 179.72939 * 20 19 15 22 22 O 1.42892 * 109.47242 * 64.72420 * 21 20 19 23 23 Si 1.86298 * 109.46915 * 184.72958 * 21 20 19 24 24 C 1.38288 * 120.11246 * 359.45211 * 20 19 15 25 25 C 1.38124 * 120.05603 * 0.27271 * 24 20 19 26 26 C 1.53785 * 113.61577 * 209.99989 * 4 3 2 27 27 H 1.08993 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47409 * 300.00359 * 1 2 3 29 29 H 1.09004 * 109.47071 * 60.00023 * 1 2 3 30 30 H 1.08995 * 109.47001 * 240.00348 * 2 1 3 31 31 H 1.08990 * 109.47027 * 119.99760 * 2 1 3 32 32 H 1.09006 * 113.61103 * 25.44429 * 6 4 3 33 33 H 1.08996 * 113.61319 * 254.54573 * 6 4 3 34 34 H 0.96997 * 120.00300 * 72.50097 * 9 7 6 35 35 H 1.08998 * 109.47277 * 59.99585 * 12 10 9 36 36 H 1.09000 * 109.47142 * 300.00313 * 12 10 9 37 37 H 1.07995 * 119.97539 * 180.29634 * 19 15 14 38 38 H 1.09000 * 109.46724 * 304.72465 * 21 20 19 39 39 H 0.96703 * 114.00176 * 180.02562 * 22 21 20 40 40 H 1.48506 * 109.99834 * 178.68053 * 23 21 20 41 41 H 1.48502 * 110.00011 * 299.99318 * 23 21 20 42 42 H 1.07998 * 119.97164 * 180.29547 * 24 20 19 43 43 H 1.07996 * 120.02740 * 179.97438 * 25 24 20 44 44 H 1.09003 * 113.60733 * 105.39305 * 26 4 3 45 45 H 1.09000 * 113.61450 * 334.48820 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9278 0.5458 0.3247 6 6 4.0048 2.0453 -1.3006 7 6 4.9913 2.8302 -0.4201 8 1 5.9154 2.2915 -0.2103 9 7 5.2240 4.2020 -0.8786 10 6 6.3980 4.5304 -1.4534 11 8 7.2616 3.6902 -1.5914 12 6 6.6376 5.9416 -1.9247 13 8 7.9445 6.0381 -2.4944 14 6 8.3212 7.2535 -2.9717 15 6 9.5764 7.4187 -3.5386 16 7 10.5074 6.2713 -3.6237 17 8 11.6096 6.4169 -4.1211 18 8 10.1717 5.1816 -3.1955 19 6 9.9547 8.6539 -4.0287 20 6 9.0877 9.7274 -3.9443 21 6 9.5052 11.0750 -4.4741 22 8 9.6847 10.9956 -5.8895 23 14 8.1858 12.3312 -4.0848 24 6 7.8358 9.5653 -3.3796 25 6 7.4507 8.3312 -2.8933 26 6 3.9483 2.7254 0.7051 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 3.3022 2.6795 -1.8414 33 1 4.4843 1.3031 -1.9388 34 1 4.5332 4.8740 -0.7685 35 1 6.5578 6.6254 -1.0796 36 1 5.8935 6.2049 -2.6764 37 1 10.9300 8.7818 -4.4745 38 1 10.4424 11.3752 -4.0053 39 1 9.9548 11.8288 -6.2991 40 1 8.5998 13.6709 -4.5741 41 1 6.9029 11.9334 -4.7183 42 1 7.1585 10.4044 -3.3191 43 1 6.4731 8.2053 -2.4520 44 1 4.3823 2.5322 1.6862 45 1 3.2303 3.5455 0.7128 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10905468_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:03 Heat of formation + Delta-G solvation = -81.785347 kcal Electronic energy + Delta-G solvation = -30601.139789 eV Core-core repulsion = 25977.020059 eV Total energy + Delta-G solvation = -4624.119729 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.98071 -41.76341 -41.15839 -40.08567 -39.24459 -37.72672 -37.46947 -37.08622 -34.47883 -33.47911 -32.46256 -31.87461 -30.03478 -27.55373 -26.88735 -26.73755 -25.32760 -23.97362 -23.70146 -22.66833 -21.78788 -21.10652 -20.37190 -19.43140 -19.08680 -18.80296 -18.44810 -18.28711 -18.27068 -17.63393 -17.41551 -16.82498 -16.61691 -16.56078 -16.34433 -16.07202 -15.62951 -15.59210 -15.23453 -14.66189 -14.49447 -14.29453 -14.16889 -13.89443 -13.81802 -13.60210 -13.55624 -13.20739 -12.93104 -12.79335 -12.56465 -12.46595 -12.21025 -12.16707 -12.04525 -12.02805 -11.85559 -11.77680 -11.70278 -10.94250 -10.89035 -10.77752 -10.48663 -10.18299 -9.86412 -5.23366 -1.08118 -0.33017 0.42426 0.57029 0.99415 1.10331 1.34219 1.40510 1.70218 1.95613 2.17564 2.71865 2.90414 3.08475 3.12827 3.29888 3.41616 3.44289 3.47383 3.57972 3.58972 3.63788 3.73732 3.75043 3.76818 4.06067 4.08931 4.16580 4.19223 4.30727 4.32134 4.39228 4.47668 4.58135 4.60576 4.70051 4.75074 4.84272 4.87269 4.92911 4.95842 4.96543 5.16822 5.33057 5.48164 5.74441 6.19499 6.20530 6.27255 6.97695 7.03196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.373 6.373 4 C 0.066 3.934 5 H 0.093 0.907 6 C -0.169 4.169 7 C 0.127 3.873 8 H 0.122 0.878 9 N -0.715 5.715 10 C 0.515 3.485 11 O -0.496 6.496 12 C 0.030 3.970 13 O -0.254 6.254 14 C 0.200 3.800 15 C -0.076 4.076 16 N 0.029 4.971 17 O -0.179 6.179 18 O -0.118 6.118 19 C 0.010 3.990 20 C -0.110 4.110 21 C -0.074 4.074 22 O -0.535 6.535 23 Si 0.686 3.314 24 C -0.023 4.023 25 C -0.209 4.209 26 C -0.143 4.143 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.403 0.597 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.163 0.837 38 H 0.084 0.916 39 H 0.385 0.615 40 H -0.255 1.255 41 H -0.251 1.251 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.083 0.917 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.289 6.124 4.392 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.292 6.292 4 C 0.007 3.993 5 H 0.111 0.889 6 C -0.208 4.208 7 C 0.022 3.978 8 H 0.140 0.860 9 N -0.369 5.369 10 C 0.299 3.701 11 O -0.368 6.368 12 C -0.048 4.048 13 O -0.163 6.163 14 C 0.150 3.850 15 C -0.160 4.160 16 N 0.549 4.451 17 O -0.387 6.387 18 O -0.342 6.342 19 C -0.009 4.009 20 C -0.111 4.111 21 C -0.183 4.183 22 O -0.343 6.343 23 Si 0.586 3.414 24 C -0.040 4.040 25 C -0.228 4.228 26 C -0.181 4.181 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.238 0.762 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.180 0.820 38 H 0.102 0.898 39 H 0.234 0.766 40 H -0.179 1.179 41 H -0.176 1.176 42 H 0.167 0.833 43 H 0.175 0.825 44 H 0.102 0.898 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.788 6.008 4.087 10.652 hybrid contribution 0.453 0.194 -1.075 1.182 sum -7.336 6.202 3.013 10.067 Atomic orbital electron populations 1.21760 0.93559 1.02530 1.03173 1.22556 0.95784 0.83561 1.00248 1.87942 1.19987 1.26745 1.94556 1.23379 0.81734 0.97822 0.96359 0.88905 1.24032 0.98458 1.00389 0.97906 1.22255 0.98337 0.82236 0.94968 0.85994 1.45696 1.16636 1.12302 1.62249 1.19857 0.82643 0.89060 0.78576 1.90860 1.43041 1.50173 1.52709 1.22740 0.84505 0.97399 1.00193 1.86499 1.32269 1.26043 1.71456 1.18681 0.90727 0.85797 0.89762 1.20543 0.90795 0.89199 1.15474 1.43325 1.01003 1.02011 0.98737 1.94549 1.07293 1.90648 1.46199 1.94695 1.80808 1.11238 1.47449 1.20804 1.01083 0.88025 0.90975 1.19132 0.94322 0.94774 1.02873 1.24772 1.09067 1.00112 0.84398 1.86590 1.90975 1.38143 1.18593 0.95183 0.77793 0.76726 0.91656 1.21244 0.94345 0.97069 0.91383 1.21242 1.01263 0.91970 1.08309 1.23632 0.97363 0.98633 0.98473 0.90923 0.91789 0.91826 0.93190 0.93154 0.88699 0.90409 0.76178 0.87871 0.88036 0.81976 0.89767 0.76598 1.17940 1.17608 0.83341 0.82507 0.89827 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.17 10.28 37.16 0.38 0.56 16 2 C 0.05 -0.04 6.50 37.16 0.24 0.21 16 3 O -0.37 -0.28 10.36 -35.23 -0.36 -0.65 16 4 C 0.07 -0.07 4.31 -25.91 -0.11 -0.18 16 5 H 0.09 -0.18 7.87 -51.93 -0.41 -0.59 16 6 C -0.17 0.16 7.71 -25.92 -0.20 -0.04 16 7 C 0.13 -0.16 4.24 -67.12 -0.28 -0.45 16 8 H 0.12 0.03 7.46 -51.93 -0.39 -0.35 16 9 N -0.71 1.64 5.35 -53.02 -0.28 1.36 16 10 C 0.51 0.37 7.91 -10.98 -0.09 0.28 16 11 O -0.50 -3.09 16.10 -14.35 -0.23 -3.32 16 12 C 0.03 -0.07 5.22 36.01 0.19 0.12 16 13 O -0.25 -0.64 7.68 -49.78 -0.38 -1.02 16 14 C 0.20 0.25 6.67 -39.21 -0.26 -0.01 16 15 C -0.08 -0.26 6.87 -79.80 -0.55 -0.80 16 16 N 0.03 0.20 4.45 34.03 0.15 0.36 16 17 O -0.18 -1.35 18.45 -29.46 -0.54 -1.89 16 18 O -0.12 -1.05 17.24 -36.49 -0.63 -1.68 16 19 C 0.01 0.01 9.18 -39.60 -0.36 -0.35 16 20 C -0.11 0.10 5.39 -104.60 -0.56 -0.46 16 21 C -0.07 0.17 2.79 36.01 0.10 0.27 16 22 O -0.53 0.33 12.81 -35.23 -0.45 -0.13 16 23 Si 0.69 -2.46 29.85 -169.99 -5.07 -7.54 16 24 C -0.02 0.06 8.66 -39.60 -0.34 -0.28 16 25 C -0.21 0.55 9.04 -39.43 -0.36 0.19 16 26 C -0.14 0.33 7.66 -25.91 -0.20 0.13 16 27 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 28 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 29 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 30 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 31 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 33 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 34 H 0.40 -2.26 8.73 -40.82 -0.36 -2.61 16 35 H 0.10 -0.60 7.66 -51.93 -0.40 -0.99 16 36 H 0.10 -0.54 7.66 -51.93 -0.40 -0.94 16 37 H 0.16 0.16 7.61 -52.49 -0.40 -0.24 16 38 H 0.08 -0.33 7.96 -51.93 -0.41 -0.75 16 39 H 0.39 -1.74 8.74 45.56 0.40 -1.34 16 40 H -0.25 0.29 7.11 56.52 0.40 0.69 16 41 H -0.25 0.24 7.05 56.52 0.40 0.64 16 42 H 0.15 -0.79 4.86 -52.49 -0.26 -1.05 16 43 H 0.16 -1.01 6.30 -52.49 -0.33 -1.34 16 44 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 45 H 0.10 -0.27 8.12 -51.93 -0.42 -0.69 16 LS Contribution 386.98 15.07 5.83 5.83 Total: 0.00 -12.82 386.98 -10.33 -23.15 By element: Atomic # 1 Polarization: -7.71 SS G_CDS: -5.95 Total: -13.66 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.41 Total: -0.82 kcal Atomic # 7 Polarization: 1.85 SS G_CDS: -0.13 Total: 1.72 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -2.60 Total: -8.68 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: -5.07 Total: -7.54 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -12.82 -10.33 -23.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905468_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.634 kcal (2) G-P(sol) polarization free energy of solvation -12.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds