Wall clock time and date at job start Tue Mar 9 2021 12:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46679 * 2 1 4 4 C 1.42902 * 113.99750 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.85201 * 341.19868 * 4 3 2 6 6 C 1.53785 * 113.68947 * 112.46676 * 4 3 2 7 7 C 1.53778 * 87.08391 * 139.99277 * 6 4 3 8 8 H 1.08998 * 113.68919 * 89.12384 * 7 6 4 9 9 N 1.46497 * 113.61546 * 220.02035 * 7 6 4 10 10 C 1.34775 * 119.99735 * 252.49517 * 9 7 6 11 11 O 1.21274 * 120.00383 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99985 * 180.02562 * 10 9 7 13 13 O 1.42896 * 109.47206 * 180.02562 * 12 10 9 14 14 C 1.35900 * 116.99681 * 179.97438 * 13 12 10 15 15 C 1.38718 * 120.05480 * 180.02562 * 14 13 12 16 16 N 1.48004 * 120.02562 * 359.97438 * 15 14 13 17 17 O 1.21801 * 120.00254 * 180.02562 * 16 15 14 18 18 O 1.21802 * 120.00195 * 359.97438 * 16 15 14 19 19 C 1.38165 * 119.94629 * 179.70593 * 15 14 13 20 20 C 1.38249 * 120.05169 * 0.54808 * 19 15 14 21 21 C 1.50702 * 119.94279 * 179.72939 * 20 19 15 22 22 O 1.42892 * 109.47242 * 64.72420 * 21 20 19 23 23 Si 1.86298 * 109.46915 * 184.72958 * 21 20 19 24 24 C 1.38288 * 120.11246 * 359.45211 * 20 19 15 25 25 C 1.38124 * 120.05603 * 0.27271 * 24 20 19 26 26 C 1.53785 * 113.61577 * 209.99989 * 4 3 2 27 27 H 1.08993 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47409 * 300.00359 * 1 2 3 29 29 H 1.09004 * 109.47071 * 60.00023 * 1 2 3 30 30 H 1.08995 * 109.47001 * 240.00348 * 2 1 3 31 31 H 1.08990 * 109.47027 * 119.99760 * 2 1 3 32 32 H 1.09006 * 113.61103 * 25.44429 * 6 4 3 33 33 H 1.08996 * 113.61319 * 254.54573 * 6 4 3 34 34 H 0.96997 * 120.00300 * 72.50097 * 9 7 6 35 35 H 1.08998 * 109.47277 * 59.99585 * 12 10 9 36 36 H 1.09000 * 109.47142 * 300.00313 * 12 10 9 37 37 H 1.07995 * 119.97539 * 180.29634 * 19 15 14 38 38 H 1.09000 * 109.46724 * 304.72465 * 21 20 19 39 39 H 0.96703 * 114.00176 * 180.02562 * 22 21 20 40 40 H 1.48506 * 109.99834 * 178.68053 * 23 21 20 41 41 H 1.48502 * 110.00011 * 299.99318 * 23 21 20 42 42 H 1.07998 * 119.97164 * 180.29547 * 24 20 19 43 43 H 1.07996 * 120.02740 * 179.97438 * 25 24 20 44 44 H 1.09003 * 113.60733 * 105.39305 * 26 4 3 45 45 H 1.09000 * 113.61450 * 334.48820 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9278 0.5458 0.3247 6 6 4.0048 2.0453 -1.3006 7 6 4.9913 2.8302 -0.4201 8 1 5.9154 2.2915 -0.2103 9 7 5.2240 4.2020 -0.8786 10 6 6.3980 4.5304 -1.4534 11 8 7.2616 3.6902 -1.5914 12 6 6.6376 5.9416 -1.9247 13 8 7.9445 6.0381 -2.4944 14 6 8.3212 7.2535 -2.9717 15 6 9.5764 7.4187 -3.5386 16 7 10.5074 6.2713 -3.6237 17 8 11.6096 6.4169 -4.1211 18 8 10.1717 5.1816 -3.1955 19 6 9.9547 8.6539 -4.0287 20 6 9.0877 9.7274 -3.9443 21 6 9.5052 11.0750 -4.4741 22 8 9.6847 10.9956 -5.8895 23 14 8.1858 12.3312 -4.0848 24 6 7.8358 9.5653 -3.3796 25 6 7.4507 8.3312 -2.8933 26 6 3.9483 2.7254 0.7051 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 3.3022 2.6795 -1.8414 33 1 4.4843 1.3031 -1.9388 34 1 4.5332 4.8740 -0.7685 35 1 6.5578 6.6254 -1.0796 36 1 5.8935 6.2049 -2.6764 37 1 10.9300 8.7818 -4.4745 38 1 10.4424 11.3752 -4.0053 39 1 9.9548 11.8288 -6.2991 40 1 8.5998 13.6709 -4.5741 41 1 6.9029 11.9334 -4.7183 42 1 7.1585 10.4044 -3.3191 43 1 6.4731 8.2053 -2.4520 44 1 4.3823 2.5322 1.6862 45 1 3.2303 3.5455 0.7128 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905468_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:02 Heat of formation + Delta-G solvation = -85.824092 kcal Electronic energy + Delta-G solvation = -30601.314922 eV Core-core repulsion = 25977.020059 eV Total energy + Delta-G solvation = -4624.294862 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.29768 -41.80922 -41.13611 -40.04692 -39.22972 -37.64247 -37.58468 -37.40100 -34.47665 -33.49868 -32.36356 -31.79896 -29.90235 -27.81833 -26.77960 -26.61849 -25.24035 -23.97569 -23.64816 -22.72165 -21.76320 -21.01477 -20.45522 -19.78406 -19.13220 -18.71948 -18.58748 -18.38047 -18.24626 -17.57971 -17.36452 -16.75356 -16.52606 -16.45704 -16.28230 -15.91525 -15.66845 -15.50420 -15.19153 -14.57261 -14.37389 -14.19152 -14.05508 -13.81883 -13.74759 -13.48530 -13.43915 -13.15507 -12.82477 -12.70957 -12.67508 -12.48032 -12.35610 -12.27633 -12.14566 -12.12071 -11.94863 -11.87181 -11.77902 -11.00862 -10.83622 -10.59121 -10.42907 -10.14606 -9.79266 -4.92288 -1.30894 -0.24348 0.15823 0.34730 1.19848 1.26207 1.42664 1.62490 1.96528 2.02527 2.27671 2.80807 3.06268 3.23601 3.30892 3.41970 3.52170 3.55575 3.62935 3.70032 3.79017 3.85569 3.87392 3.95021 4.02402 4.17847 4.22507 4.24944 4.32705 4.40180 4.49007 4.51279 4.62429 4.69588 4.72704 4.82922 4.85535 4.93768 4.96487 5.01975 5.04387 5.07428 5.18808 5.26659 5.44123 5.75303 6.28339 6.42718 6.44244 6.53207 7.13500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.389 6.389 4 C 0.060 3.940 5 H 0.098 0.902 6 C -0.167 4.167 7 C 0.124 3.876 8 H 0.101 0.899 9 N -0.696 5.696 10 C 0.509 3.491 11 O -0.565 6.565 12 C 0.024 3.976 13 O -0.291 6.291 14 C 0.194 3.806 15 C -0.104 4.104 16 N 0.035 4.965 17 O -0.201 6.201 18 O -0.173 6.173 19 C -0.004 4.004 20 C -0.112 4.112 21 C -0.095 4.095 22 O -0.562 6.562 23 Si 0.786 3.214 24 C -0.008 4.008 25 C -0.188 4.188 26 C -0.128 4.128 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.423 0.577 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.098 0.902 39 H 0.399 0.601 40 H -0.291 1.291 41 H -0.278 1.278 42 H 0.185 0.815 43 H 0.207 0.793 44 H 0.090 0.910 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.230 8.946 5.466 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.308 6.308 4 C 0.002 3.998 5 H 0.116 0.884 6 C -0.206 4.206 7 C 0.018 3.982 8 H 0.119 0.881 9 N -0.350 5.350 10 C 0.295 3.705 11 O -0.443 6.443 12 C -0.053 4.053 13 O -0.201 6.201 14 C 0.144 3.856 15 C -0.190 4.190 16 N 0.545 4.455 17 O -0.409 6.409 18 O -0.387 6.387 19 C -0.023 4.023 20 C -0.113 4.113 21 C -0.201 4.201 22 O -0.373 6.373 23 Si 0.688 3.312 24 C -0.026 4.026 25 C -0.207 4.207 26 C -0.166 4.166 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.262 0.738 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.170 0.830 38 H 0.116 0.884 39 H 0.250 0.750 40 H -0.218 1.218 41 H -0.204 1.204 42 H 0.202 0.798 43 H 0.224 0.776 44 H 0.108 0.892 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.760 8.780 5.199 14.829 hybrid contribution 1.297 -0.550 -1.455 2.026 sum -9.463 8.230 3.744 13.088 Atomic orbital electron populations 1.21769 0.93241 1.03175 1.02719 1.22668 0.96120 0.83231 1.00686 1.87911 1.20775 1.27489 1.94659 1.23500 0.81165 0.98726 0.96443 0.88443 1.24002 0.98436 1.00243 0.97944 1.22126 0.97629 0.82739 0.95658 0.88144 1.45553 1.16351 1.12330 1.60768 1.20543 0.82286 0.89983 0.77657 1.90841 1.45351 1.52373 1.55688 1.23137 0.83530 0.95843 1.02792 1.86467 1.34716 1.27062 1.71828 1.18943 0.90392 0.86631 0.89635 1.20835 0.91360 0.88136 1.18654 1.43863 1.01230 1.02792 0.97616 1.94493 1.08824 1.90931 1.46631 1.94677 1.81232 1.13245 1.49530 1.20852 1.01535 0.88139 0.91764 1.19447 0.94730 0.94518 1.02591 1.25229 1.11182 0.99962 0.83768 1.86546 1.91308 1.39762 1.19648 0.94166 0.74351 0.72911 0.89729 1.21702 0.93641 0.98118 0.89090 1.21781 1.02087 0.90219 1.06571 1.23551 0.96689 0.98244 0.98109 0.89779 0.92072 0.92374 0.93071 0.92424 0.88464 0.91743 0.73802 0.83375 0.84129 0.82984 0.88379 0.74978 1.21846 1.20437 0.79844 0.77584 0.89153 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.37 10.28 71.98 0.74 1.11 16 2 C 0.05 -0.06 6.50 71.98 0.47 0.41 16 3 O -0.39 -0.52 10.36 -148.98 -1.54 -2.07 16 4 C 0.06 -0.12 4.31 31.12 0.13 0.01 16 5 H 0.10 -0.32 7.87 -2.39 -0.02 -0.34 16 6 C -0.17 0.20 7.71 31.12 0.24 0.44 16 7 C 0.12 -0.25 4.24 45.52 0.19 -0.06 16 8 H 0.10 0.28 7.46 -2.39 -0.02 0.27 16 9 N -0.70 3.74 5.35 -440.05 -2.36 1.39 16 10 C 0.51 0.82 7.91 87.66 0.69 1.51 16 11 O -0.57 -8.60 16.10 16.03 0.26 -8.34 16 12 C 0.02 -0.16 5.22 71.24 0.37 0.21 16 13 O -0.29 -1.56 7.68 -63.40 -0.49 -2.05 16 14 C 0.19 0.38 6.67 22.51 0.15 0.53 16 15 C -0.10 -0.88 6.87 36.48 0.25 -0.63 16 16 N 0.03 0.61 4.45 -46.24 -0.21 0.41 16 17 O -0.20 -3.87 18.45 18.89 0.35 -3.52 16 18 O -0.17 -3.87 17.24 25.61 0.44 -3.43 16 19 C 0.00 -0.01 9.18 22.25 0.20 0.19 16 20 C -0.11 0.35 5.39 -19.85 -0.11 0.24 16 21 C -0.09 0.57 2.79 71.24 0.20 0.77 16 22 O -0.56 0.90 12.81 -148.98 -1.91 -1.01 16 23 Si 0.79 -7.69 29.85 68.60 2.05 -5.64 16 24 C -0.01 0.07 8.66 22.25 0.19 0.27 16 25 C -0.19 1.68 9.04 22.37 0.20 1.88 16 26 C -0.13 0.68 7.66 31.12 0.24 0.92 16 27 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.10 -0.17 8.14 -2.38 -0.02 -0.19 16 33 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.42 -5.79 8.73 -92.71 -0.81 -6.60 16 35 H 0.15 -2.36 7.66 -2.39 -0.02 -2.38 16 36 H 0.14 -2.06 7.66 -2.39 -0.02 -2.08 16 37 H 0.15 0.69 7.61 -2.91 -0.02 0.67 16 38 H 0.10 -0.89 7.96 -2.39 -0.02 -0.90 16 39 H 0.40 -3.71 8.74 -74.06 -0.65 -4.36 16 40 H -0.29 1.06 7.11 99.48 0.71 1.77 16 41 H -0.28 1.44 7.05 99.48 0.70 2.14 16 42 H 0.18 -2.93 4.86 -2.91 -0.01 -2.94 16 43 H 0.21 -3.99 6.30 -2.91 -0.02 -4.00 16 44 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 45 H 0.11 -0.82 8.12 -2.39 -0.02 -0.84 16 Total: 0.00 -38.12 386.98 0.40 -37.72 By element: Atomic # 1 Polarization: -20.89 SS G_CDS: -0.37 Total: -21.27 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 4.17 Total: 7.81 kcal Atomic # 7 Polarization: 4.36 SS G_CDS: -2.56 Total: 1.79 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -2.89 Total: -20.41 kcal Atomic # 14 Polarization: -7.69 SS G_CDS: 2.05 Total: -5.64 kcal Total: -38.12 0.40 -37.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905468_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.102 kcal (2) G-P(sol) polarization free energy of solvation -38.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds