Wall clock time and date at job start Tue Mar 9 2021 12:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42892 * 109.47475 * 2 1 4 4 C 1.42896 * 114.00195 * 179.97438 * 3 2 1 5 5 H 1.09003 * 112.85384 * 18.80360 * 4 3 2 6 6 C 1.53787 * 113.61568 * 149.99874 * 4 3 2 7 7 C 1.53787 * 87.07976 * 139.98359 * 6 4 3 8 8 H 1.08996 * 113.61278 * 89.20310 * 7 6 4 9 9 N 1.46501 * 113.60855 * 220.01944 * 7 6 4 10 10 C 1.34782 * 119.99711 * 203.46871 * 9 7 6 11 11 O 1.21287 * 119.99871 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99941 * 180.02562 * 10 9 7 13 13 O 1.42901 * 109.46957 * 179.97438 * 12 10 9 14 14 C 1.35984 * 117.00091 * 179.97438 * 13 12 10 15 15 C 1.38678 * 120.00359 * 180.02562 * 14 13 12 16 16 C 1.50693 * 119.99578 * 0.25059 * 15 14 13 17 17 O 1.42895 * 109.47538 * 74.72923 * 16 15 14 18 18 Si 1.86302 * 109.46871 * 194.72738 * 16 15 14 19 19 C 1.38155 * 119.99899 * 179.97438 * 15 14 13 20 20 C 1.38673 * 120.00077 * 359.97438 * 19 15 14 21 21 O 1.35985 * 119.99652 * 180.02562 * 20 19 15 22 22 C 1.42905 * 116.99970 * 180.02562 * 21 20 19 23 23 C 1.38723 * 120.00160 * 0.02562 * 20 19 15 24 24 C 1.38105 * 119.99754 * 359.97261 * 23 20 19 25 25 C 1.53781 * 87.17238 * 334.61004 * 7 6 4 26 26 H 1.09000 * 109.47434 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47339 * 300.00434 * 1 2 3 28 28 H 1.09006 * 109.46573 * 60.00550 * 1 2 3 29 29 H 1.09003 * 109.47339 * 239.99566 * 2 1 3 30 30 H 1.08999 * 109.46759 * 120.00112 * 2 1 3 31 31 H 1.09000 * 113.61120 * 25.43403 * 6 4 3 32 32 H 1.08995 * 113.61273 * 254.52690 * 6 4 3 33 33 H 0.96994 * 120.00348 * 23.47272 * 9 7 6 34 34 H 1.08996 * 109.47655 * 59.99999 * 12 10 9 35 35 H 1.09000 * 109.47111 * 300.00049 * 12 10 9 36 36 H 1.09001 * 109.47240 * 314.72483 * 16 15 14 37 37 H 0.96707 * 113.99472 * 300.00072 * 17 16 15 38 38 H 1.48501 * 110.00251 * 60.00028 * 18 16 15 39 39 H 1.48507 * 109.99950 * 181.32162 * 18 16 15 40 40 H 1.08000 * 119.99257 * 179.97438 * 19 15 14 41 41 H 1.09005 * 109.46899 * 59.99953 * 22 21 20 42 42 H 1.08997 * 109.47467 * 179.97438 * 22 21 20 43 43 H 1.08994 * 109.46775 * 300.00775 * 22 21 20 44 44 H 1.08004 * 119.99547 * 179.97438 * 23 20 19 45 45 H 1.08005 * 119.99705 * 180.02562 * 24 23 20 46 46 H 1.08997 * 113.61273 * 139.94398 * 25 7 6 47 47 H 1.09002 * 113.61344 * 270.84240 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9281 0.5454 -0.3228 6 6 3.9490 2.7250 -0.7040 7 6 4.9897 2.8312 0.4232 8 1 5.9145 2.2930 0.2157 9 7 5.2206 4.2035 0.8812 10 6 6.3813 4.5258 1.4859 11 8 7.2346 3.6798 1.6505 12 6 6.6186 5.9372 1.9575 13 8 7.9105 6.0267 2.5617 14 6 8.2840 7.2423 3.0433 15 6 9.5252 7.3997 3.6415 16 6 10.4622 6.2248 3.7529 17 8 11.0365 5.9505 2.4734 18 14 11.8163 6.6236 4.9687 19 6 9.9047 8.6348 4.1303 20 6 9.0449 9.7174 4.0222 21 8 9.4188 10.9333 4.5029 22 6 8.4832 12.0038 4.3583 23 6 7.8033 9.5600 3.4238 24 6 7.4239 8.3253 2.9351 25 6 4.0040 2.0455 1.3040 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.2305 3.5446 -0.7136 32 1 4.3850 2.5313 -1.6839 33 1 4.5383 4.8801 0.7492 34 1 5.8567 6.2093 2.6879 35 1 6.5666 6.6178 1.1077 36 1 9.9098 5.3508 4.0981 37 1 10.3879 5.7344 1.7894 38 1 11.2322 6.9107 6.3034 39 1 12.7651 5.4851 5.0637 40 1 10.8712 8.7572 4.5966 41 1 7.5605 11.7530 4.8817 42 1 8.9050 12.9148 4.7826 43 1 8.2702 12.1596 3.3008 44 1 7.1335 10.4032 3.3400 45 1 6.4574 8.2029 2.4688 46 1 4.4843 1.3043 1.9427 47 1 3.3006 2.6791 1.8443 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905468_4974302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:16 Heat of formation + Delta-G solvation = -128.384269 kcal Electronic energy + Delta-G solvation = -28889.507412 eV Core-core repulsion = 24620.163626 eV Total energy + Delta-G solvation = -4269.343785 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.86580 -41.25511 -40.26330 -39.59841 -38.16219 -37.51476 -36.92495 -34.49688 -32.82244 -31.84888 -31.02372 -29.47876 -27.96933 -26.82529 -26.60137 -25.29625 -23.79576 -23.50264 -22.42001 -21.75307 -21.02421 -19.56319 -18.84893 -18.51821 -18.22304 -18.03946 -17.52122 -17.40252 -16.78288 -16.62733 -16.53859 -16.36243 -16.06361 -15.61918 -15.57568 -15.44084 -15.16349 -14.67559 -14.43558 -14.19873 -14.12548 -14.01299 -13.56181 -13.52940 -13.47606 -13.43553 -13.05185 -12.83340 -12.52190 -12.50701 -12.31197 -12.18273 -12.03729 -11.97748 -11.81191 -11.45452 -11.31490 -11.24152 -11.00763 -10.46265 -10.19404 -10.10490 -8.83086 -4.94229 0.05710 0.32497 1.32773 1.37375 1.41384 1.57443 1.90639 2.34019 2.48227 2.54151 2.82202 3.36078 3.47522 3.49040 3.55057 3.72427 3.74918 3.83405 3.84867 3.93557 4.05709 4.08474 4.12479 4.15388 4.20425 4.21501 4.27129 4.36606 4.44691 4.45348 4.46586 4.64984 4.68413 4.69688 4.79506 4.79707 4.89595 4.92906 4.96696 4.98674 5.01352 5.11611 5.20045 5.24322 5.38191 5.42268 6.11321 6.25710 6.38570 6.44793 6.51076 7.06227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.390 6.390 4 C 0.061 3.939 5 H 0.100 0.900 6 C -0.129 4.129 7 C 0.124 3.876 8 H 0.103 0.897 9 N -0.698 5.698 10 C 0.514 3.486 11 O -0.570 6.570 12 C 0.038 3.962 13 O -0.316 6.316 14 C 0.089 3.911 15 C -0.119 4.119 16 C -0.082 4.082 17 O -0.545 6.545 18 Si 0.811 3.189 19 C -0.118 4.118 20 C 0.091 3.909 21 O -0.333 6.333 22 C 0.017 3.983 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.168 4.168 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.421 0.579 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.061 0.939 37 H 0.372 0.628 38 H -0.264 1.264 39 H -0.294 1.294 40 H 0.152 0.848 41 H 0.066 0.934 42 H 0.115 0.885 43 H 0.067 0.933 44 H 0.161 0.839 45 H 0.167 0.833 46 H 0.065 0.935 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 5.151 -2.948 9.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.309 6.309 4 C 0.003 3.997 5 H 0.118 0.882 6 C -0.167 4.167 7 C 0.019 3.981 8 H 0.121 0.879 9 N -0.352 5.352 10 C 0.301 3.699 11 O -0.448 6.448 12 C -0.040 4.040 13 O -0.230 6.230 14 C 0.044 3.956 15 C -0.120 4.120 16 C -0.189 4.189 17 O -0.351 6.351 18 Si 0.713 3.287 19 C -0.136 4.136 20 C 0.046 3.954 21 O -0.247 6.247 22 C -0.077 4.077 23 C -0.180 4.180 24 C -0.178 4.178 25 C -0.207 4.207 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.260 0.740 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.220 0.780 38 H -0.190 1.190 39 H -0.222 1.222 40 H 0.170 0.830 41 H 0.084 0.916 42 H 0.133 0.867 43 H 0.086 0.914 44 H 0.179 0.821 45 H 0.184 0.816 46 H 0.084 0.916 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.974 4.490 -1.689 7.662 hybrid contribution -1.885 -1.014 -0.521 2.203 sum -7.859 3.476 -2.210 8.873 Atomic orbital electron populations 1.21773 0.93265 1.03207 1.02693 1.22674 0.96113 0.83180 1.00733 1.87913 1.20791 1.27578 1.94644 1.23531 0.81187 0.98701 0.96292 0.88237 1.23548 0.96723 0.98274 0.98169 1.22147 0.97707 0.82604 0.95643 0.87931 1.45613 1.17811 1.12192 1.59550 1.20571 0.81975 0.89995 0.77381 1.90768 1.45553 1.52084 1.56421 1.22714 0.85380 0.94792 1.01124 1.86083 1.34756 1.28846 1.73313 1.18803 0.94042 0.84763 0.97978 1.19453 0.94208 0.95754 1.02551 1.25512 1.04414 0.95359 0.93602 1.86660 1.37030 1.92002 1.19391 0.92221 0.77570 0.85703 0.73242 1.20183 1.00448 0.89706 1.03306 1.18978 0.93911 0.85854 0.96691 1.86089 1.45317 1.16514 1.76785 1.23357 0.93303 0.88180 1.02882 1.21422 0.96058 0.99308 1.01202 1.21372 1.01094 0.91580 1.03747 1.24029 0.98447 1.00222 0.97967 0.89704 0.92407 0.92115 0.92353 0.93013 0.87483 0.89001 0.74042 0.86065 0.85454 0.92114 0.77987 1.18993 1.22174 0.83043 0.91575 0.86714 0.91394 0.82110 0.81558 0.91577 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.34 10.28 71.98 0.74 1.08 16 2 C 0.05 -0.06 6.50 71.98 0.47 0.41 16 3 O -0.39 -0.65 10.36 -148.98 -1.54 -2.19 16 4 C 0.06 -0.11 4.31 31.18 0.13 0.02 16 5 H 0.10 -0.36 7.87 -2.39 -0.02 -0.38 16 6 C -0.13 0.63 7.66 31.12 0.24 0.87 16 7 C 0.12 -0.23 4.21 45.52 0.19 -0.04 16 8 H 0.10 0.23 7.50 -2.39 -0.02 0.21 16 9 N -0.70 2.98 5.36 -440.02 -2.36 0.62 16 10 C 0.51 1.03 7.91 87.65 0.69 1.73 16 11 O -0.57 -7.62 16.12 15.99 0.26 -7.36 16 12 C 0.04 -0.15 5.22 71.23 0.37 0.22 16 13 O -0.32 -1.50 8.55 -74.34 -0.64 -2.13 16 14 C 0.09 0.33 6.61 22.49 0.15 0.47 16 15 C -0.12 -0.74 5.28 -19.78 -0.10 -0.84 16 16 C -0.08 -0.69 2.33 71.23 0.17 -0.52 16 17 O -0.54 -5.50 12.65 -148.98 -1.89 -7.38 16 18 Si 0.81 4.52 30.17 68.60 2.07 6.59 16 19 C -0.12 -0.54 8.60 22.35 0.19 -0.35 16 20 C 0.09 0.25 6.69 22.49 0.15 0.40 16 21 O -0.33 -0.74 10.50 -93.38 -0.98 -1.72 16 22 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 23 C -0.16 0.28 9.03 22.35 0.20 0.48 16 24 C -0.16 0.35 9.03 22.35 0.20 0.55 16 25 C -0.17 0.16 7.73 31.18 0.24 0.40 16 26 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.06 -0.09 8.14 -2.38 -0.02 -0.11 16 29 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.11 -0.69 8.11 -2.39 -0.02 -0.71 16 32 H 0.09 -0.56 8.14 -2.39 -0.02 -0.57 16 33 H 0.42 -4.82 8.71 -92.71 -0.81 -5.62 16 34 H 0.12 -1.17 7.66 -2.39 -0.02 -1.19 16 35 H 0.13 -1.35 7.66 -2.39 -0.02 -1.37 16 36 H 0.06 0.67 7.83 -2.39 -0.02 0.65 16 37 H 0.37 2.82 8.58 -74.05 -0.64 2.18 16 38 H -0.26 -1.98 7.11 99.48 0.71 -1.27 16 39 H -0.29 -3.49 7.11 99.48 0.71 -2.78 16 40 H 0.15 0.27 5.12 -2.91 -0.01 0.25 16 41 H 0.07 -0.52 7.66 -2.38 -0.02 -0.54 16 42 H 0.11 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H 0.07 -0.55 7.66 -2.39 -0.02 -0.57 16 44 H 0.16 -1.21 6.29 -2.91 -0.02 -1.23 16 45 H 0.17 -1.63 6.29 -2.91 -0.02 -1.65 16 46 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: 0.00 -23.91 389.33 -0.33 -24.24 By element: Atomic # 1 Polarization: -16.16 SS G_CDS: -0.40 Total: -16.56 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 5.15 Total: 5.90 kcal Atomic # 7 Polarization: 2.98 SS G_CDS: -2.36 Total: 0.62 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -4.79 Total: -20.78 kcal Atomic # 14 Polarization: 4.52 SS G_CDS: 2.07 Total: 6.59 kcal Total: -23.91 -0.33 -24.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905468_4974302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.141 kcal (2) G-P(sol) polarization free energy of solvation -23.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds