Wall clock time and date at job start Tue Mar 9 2021 12:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.46922 * 2 1 4 4 C 1.42903 * 113.99782 * 179.97438 * 3 2 1 5 5 H 1.08997 * 112.84933 * 341.19560 * 4 3 2 6 6 C 1.53781 * 113.68887 * 112.46382 * 4 3 2 7 7 C 1.53783 * 87.08183 * 139.99124 * 6 4 3 8 8 H 1.08998 * 113.68991 * 89.12713 * 7 6 4 9 9 N 1.46502 * 113.61230 * 220.02086 * 7 6 4 10 10 C 1.34781 * 119.99799 * 252.49053 * 9 7 6 11 11 O 1.21277 * 119.99625 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99728 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.46627 * 180.02562 * 12 10 9 14 14 C 1.36838 * 125.06938 * 265.29740 * 13 12 10 15 15 C 1.34234 * 109.94060 * 180.18627 * 14 13 12 16 16 C 1.50697 * 126.49694 * 179.83354 * 15 14 13 17 17 O 1.42905 * 109.46996 * 254.68956 * 16 15 14 18 18 Si 1.86301 * 109.47403 * 14.69220 * 16 15 14 19 19 C 1.46487 * 106.99934 * 359.57429 * 15 14 13 20 20 C 1.39588 * 134.03459 * 180.27680 * 19 15 14 21 21 C 1.36663 * 119.76394 * 179.97438 * 20 19 15 22 22 C 1.38788 * 120.53026 * 0.02562 * 21 20 19 23 23 C 1.37792 * 120.66420 * 359.97438 * 22 21 20 24 24 C 1.37694 * 125.06005 * 85.00681 * 13 12 10 25 25 C 1.53781 * 87.08121 * 334.56634 * 7 6 4 26 26 H 1.09003 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47650 * 300.00073 * 1 2 3 28 28 H 1.08997 * 109.46954 * 60.00597 * 1 2 3 29 29 H 1.09001 * 109.47908 * 239.99882 * 2 1 3 30 30 H 1.08997 * 109.47371 * 119.99741 * 2 1 3 31 31 H 1.09000 * 113.61438 * 25.44217 * 6 4 3 32 32 H 1.08996 * 113.61814 * 254.54083 * 6 4 3 33 33 H 0.96998 * 120.00059 * 72.49968 * 9 7 6 34 34 H 1.08998 * 109.47161 * 60.00602 * 12 10 9 35 35 H 1.08999 * 109.47432 * 300.00148 * 12 10 9 36 36 H 1.08000 * 125.02491 * 0.02562 * 14 13 12 37 37 H 1.09001 * 109.46613 * 134.69368 * 16 15 14 38 38 H 0.96696 * 114.00036 * 60.00342 * 17 16 15 39 39 H 1.48497 * 109.99842 * 179.97438 * 18 16 15 40 40 H 1.48498 * 109.99736 * 301.31722 * 18 16 15 41 41 H 1.07999 * 120.12261 * 359.95845 * 20 19 15 42 42 H 1.08007 * 119.73484 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.66751 * 180.02562 * 22 21 20 44 44 H 1.08004 * 120.11183 * 179.97438 * 23 22 21 45 45 H 1.08995 * 113.61879 * 139.97946 * 25 7 6 46 46 H 1.09003 * 113.61985 * 270.80325 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9277 0.5458 0.3247 6 6 4.0048 2.0452 -1.3006 7 6 4.9913 2.8302 -0.4200 8 1 5.9154 2.2915 -0.2103 9 7 5.2240 4.2019 -0.8787 10 6 6.3980 4.5303 -1.4535 11 8 7.2616 3.6901 -1.5913 12 6 6.6375 5.9416 -1.9248 13 7 7.9774 6.0405 -2.5087 14 6 9.0992 6.4462 -1.8383 15 6 10.1577 6.4273 -2.6637 16 6 11.5737 6.8063 -2.3141 17 8 11.8783 8.0832 -2.8788 18 14 11.7559 6.8869 -0.4618 19 6 9.6764 5.9624 -3.9668 20 6 10.2868 5.7324 -5.2009 21 6 9.5399 5.2854 -6.2544 22 6 8.1786 5.0585 -6.1075 23 6 7.5559 5.2790 -4.8983 24 6 8.2967 5.7336 -3.8125 25 6 3.9483 2.7255 0.7051 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.3023 2.6793 -1.8414 32 1 4.4844 1.3031 -1.9388 33 1 4.5331 4.8739 -0.7687 34 1 6.5578 6.6253 -1.0797 35 1 5.8936 6.2048 -2.6766 36 1 9.1281 6.7408 -0.7997 37 1 12.2591 6.0592 -2.7145 38 1 11.3064 8.7978 -2.5667 39 1 13.1482 7.2592 -0.1041 40 1 10.8042 7.8792 0.0993 41 1 11.3456 5.9074 -5.3229 42 1 10.0128 5.1072 -7.2090 43 1 7.6017 4.7048 -6.9493 44 1 6.4959 5.0999 -4.7941 45 1 4.3821 2.5324 1.6862 46 1 3.2311 3.5463 0.7136 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905468_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:54 Heat of formation + Delta-G solvation = -13.350885 kcal Electronic energy + Delta-G solvation = -27870.598859 eV Core-core repulsion = 23921.729488 eV Total energy + Delta-G solvation = -3948.869371 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.54600 -41.17426 -39.84256 -38.16018 -37.79621 -37.41814 -34.52612 -33.92133 -31.83324 -31.37253 -30.24753 -29.01465 -26.78641 -26.14000 -24.88328 -23.77367 -23.62614 -22.66416 -21.70081 -21.04991 -20.62775 -18.68273 -18.46406 -18.25005 -17.69006 -17.28149 -16.70328 -16.56152 -16.41661 -16.38182 -16.17436 -15.90745 -15.50307 -15.31509 -14.89695 -14.72401 -14.60527 -14.32674 -14.07721 -14.06067 -13.62795 -13.50440 -13.44649 -13.21503 -12.76579 -12.72698 -12.58614 -12.48287 -12.39777 -12.14416 -12.00358 -11.95627 -11.78574 -11.73743 -11.11322 -10.55753 -10.45002 -10.43443 -10.11768 -9.16742 -8.64050 -4.86129 0.13546 0.63171 1.35347 1.40631 1.44909 1.58758 1.67848 1.97542 2.16800 2.80524 2.95028 3.41784 3.51656 3.53653 3.62234 3.67049 3.74247 3.79876 3.84222 3.86894 4.03026 4.14067 4.16874 4.21275 4.23932 4.29332 4.39341 4.47971 4.49821 4.58536 4.68648 4.71361 4.71698 4.78365 4.81995 4.88867 4.93050 4.96204 5.01599 5.04524 5.13199 5.25893 5.45819 5.50251 5.65787 5.73025 5.74719 6.18432 6.22638 6.28205 6.47837 6.60518 7.13340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.391 6.391 4 C 0.060 3.940 5 H 0.098 0.902 6 C -0.167 4.167 7 C 0.126 3.874 8 H 0.103 0.897 9 N -0.700 5.700 10 C 0.494 3.506 11 O -0.567 6.567 12 C 0.087 3.913 13 N -0.466 5.466 14 C 0.075 3.925 15 C -0.215 4.215 16 C -0.051 4.051 17 O -0.553 6.553 18 Si 0.766 3.234 19 C -0.115 4.115 20 C -0.088 4.088 21 C -0.154 4.154 22 C -0.108 4.108 23 C -0.134 4.134 24 C 0.091 3.909 25 C -0.130 4.130 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.420 0.580 34 H 0.163 0.837 35 H 0.141 0.859 36 H 0.198 0.802 37 H 0.103 0.897 38 H 0.384 0.616 39 H -0.302 1.302 40 H -0.259 1.259 41 H 0.119 0.881 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.090 0.910 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 -0.270 4.366 8.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.310 6.310 4 C 0.002 3.998 5 H 0.116 0.884 6 C -0.206 4.206 7 C 0.021 3.979 8 H 0.121 0.879 9 N -0.353 5.353 10 C 0.279 3.721 11 O -0.445 6.445 12 C -0.037 4.037 13 N -0.148 5.148 14 C -0.051 4.051 15 C -0.223 4.223 16 C -0.159 4.159 17 O -0.361 6.361 18 Si 0.669 3.331 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.173 4.173 22 C -0.127 4.127 23 C -0.155 4.155 24 C -0.014 4.014 25 C -0.168 4.168 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.258 0.742 34 H 0.180 0.820 35 H 0.159 0.841 36 H 0.214 0.786 37 H 0.121 0.879 38 H 0.233 0.767 39 H -0.230 1.230 40 H -0.185 1.185 41 H 0.137 0.863 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.109 0.891 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.492 -0.564 4.807 8.098 hybrid contribution -0.244 0.774 -0.855 1.179 sum -6.736 0.210 3.952 7.813 Atomic orbital electron populations 1.21770 0.93319 1.03188 1.02680 1.22666 0.96072 0.83207 1.00712 1.87919 1.20894 1.27535 1.94667 1.23516 0.81115 0.98714 0.96488 0.88370 1.23980 0.98489 1.00216 0.97888 1.22086 0.97495 0.83000 0.95340 0.87925 1.45750 1.16804 1.12118 1.60650 1.21417 0.82088 0.91178 0.77388 1.90797 1.45352 1.52162 1.56153 1.21976 0.83449 0.94744 1.03566 1.43440 1.07859 1.56148 1.07384 1.22020 0.84373 1.00278 0.98407 1.20704 0.96099 1.12385 0.93073 1.24588 0.92886 0.86325 1.12127 1.86562 1.61017 1.18146 1.70372 0.94040 0.77617 0.88759 0.72715 1.19341 0.92919 1.04874 0.94820 1.20455 0.99920 0.98659 0.91597 1.20920 0.94598 1.02374 0.99366 1.21128 0.94932 0.99518 0.97078 1.20242 0.99861 1.03975 0.91403 1.18400 0.94403 1.02580 0.86061 1.23546 0.96842 0.98147 0.98281 0.89730 0.92139 0.92416 0.93010 0.92387 0.88830 0.91720 0.74179 0.81987 0.84105 0.78563 0.87863 0.76745 1.22978 1.18458 0.86283 0.84565 0.83745 0.85073 0.89145 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 10.28 71.98 0.74 1.13 16 2 C 0.05 -0.08 6.50 71.98 0.47 0.39 16 3 O -0.39 -0.44 10.36 -148.98 -1.54 -1.99 16 4 C 0.06 -0.16 4.31 31.12 0.13 -0.03 16 5 H 0.10 -0.42 7.87 -2.39 -0.02 -0.44 16 6 C -0.17 0.35 7.71 31.12 0.24 0.59 16 7 C 0.13 -0.44 4.24 45.52 0.19 -0.25 16 8 H 0.10 0.06 7.46 -2.39 -0.02 0.04 16 9 N -0.70 4.57 5.35 -440.03 -2.36 2.22 16 10 C 0.49 -0.62 7.90 87.66 0.69 0.07 16 11 O -0.57 -5.56 16.02 -3.02 -0.05 -5.61 16 12 C 0.09 -0.60 6.48 85.63 0.55 -0.04 16 13 N -0.47 -0.87 2.27 -520.00 -1.18 -2.05 16 14 C 0.07 0.10 9.89 83.00 0.82 0.93 16 15 C -0.22 -1.26 5.58 -18.63 -0.10 -1.36 16 16 C -0.05 -0.22 3.06 71.23 0.22 0.00 16 17 O -0.55 -3.75 12.88 -148.98 -1.92 -5.67 16 18 Si 0.77 -0.23 30.81 68.60 2.11 1.88 16 19 C -0.12 -1.16 6.35 -20.20 -0.13 -1.29 16 20 C -0.09 -0.86 10.05 22.23 0.22 -0.63 16 21 C -0.15 -1.06 9.97 22.03 0.22 -0.84 16 22 C -0.11 -0.57 10.01 22.30 0.22 -0.35 16 23 C -0.13 -0.77 10.00 22.37 0.22 -0.54 16 24 C 0.09 0.68 6.80 39.03 0.27 0.95 16 25 C -0.13 0.76 7.66 31.12 0.24 1.00 16 26 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.42 -5.54 8.73 -92.71 -0.81 -6.35 16 34 H 0.16 -2.42 8.12 -2.39 -0.02 -2.44 16 35 H 0.14 -1.60 8.14 -2.39 -0.02 -1.62 16 36 H 0.20 -1.08 6.27 -2.91 -0.02 -1.10 16 37 H 0.10 0.55 7.96 -2.39 -0.02 0.53 16 38 H 0.38 0.04 8.70 -74.06 -0.64 -0.60 16 39 H -0.30 -2.23 7.11 99.48 0.71 -1.52 16 40 H -0.26 0.10 7.00 99.48 0.70 0.80 16 41 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.14 0.38 8.06 -2.91 -0.02 0.35 16 43 H 0.14 0.03 8.06 -2.91 -0.02 0.01 16 44 H 0.13 0.14 8.06 -2.91 -0.02 0.12 16 45 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 46 H 0.10 -0.76 8.12 -2.39 -0.02 -0.77 16 Total: 0.00 -25.23 387.33 -0.14 -25.37 By element: Atomic # 1 Polarization: -13.45 SS G_CDS: -0.43 Total: -13.88 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 5.22 Total: -0.27 kcal Atomic # 7 Polarization: 3.70 SS G_CDS: -3.54 Total: 0.17 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -3.51 Total: -13.26 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: 2.11 Total: 1.88 kcal Total: -25.23 -0.14 -25.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905468_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.020 kcal (2) G-P(sol) polarization free energy of solvation -25.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds