Wall clock time and date at job start Tue Mar 9 2021 14:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00572 * 2 1 4 4 O 1.20835 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00487 * 180.02562 * 3 2 1 6 6 H 1.08997 * 112.85021 * 311.18935 * 5 3 2 7 7 C 1.53781 * 113.61886 * 82.49953 * 5 3 2 8 8 C 1.53778 * 87.08214 * 139.98186 * 7 5 3 9 9 H 1.09005 * 113.61718 * 89.11482 * 8 7 5 10 10 N 1.46501 * 113.68981 * 220.00668 * 8 7 5 11 11 C 1.34777 * 119.99961 * 252.53581 * 10 8 7 12 12 O 1.21584 * 120.00097 * 0.02562 * 11 10 8 13 13 C 1.47575 * 119.99915 * 180.02562 * 11 10 8 14 14 C 1.40199 * 120.19272 * 179.72137 * 13 11 10 15 15 N 1.39660 * 120.15600 * 0.02597 * 14 13 11 16 16 C 1.36655 * 125.68024 * 270.02299 * 15 14 13 17 17 C 1.50696 * 125.90036 * 359.95476 * 16 15 14 18 18 C 1.34804 * 108.19568 * 179.97438 * 16 15 14 19 19 C 1.40991 * 107.48575 * 359.97438 * 18 16 15 20 20 C 1.50700 * 126.25532 * 179.97438 * 19 18 16 21 21 O 1.42904 * 109.46710 * 105.02791 * 20 19 18 22 22 Si 1.86301 * 109.47240 * 345.03149 * 20 19 18 23 23 C 1.34806 * 107.48751 * 359.76016 * 19 18 16 24 24 C 1.50700 * 125.90651 * 180.26116 * 23 19 18 25 25 C 1.38763 * 119.68963 * 179.79081 * 14 13 11 26 26 C 1.38069 * 120.07325 * 0.46523 * 25 14 13 27 27 C 1.38537 * 120.39457 * 359.79097 * 26 25 14 28 28 C 1.37830 * 120.30587 * 359.97182 * 27 26 25 29 29 C 1.53777 * 87.08292 * 334.56929 * 8 7 5 30 30 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46782 * 60.00258 * 1 2 3 32 32 H 1.09004 * 109.47085 * 300.00378 * 1 2 3 33 33 H 1.08999 * 113.60871 * 254.53185 * 7 5 3 34 34 H 1.09001 * 113.61041 * 25.43090 * 7 5 3 35 35 H 0.97003 * 120.00044 * 72.53741 * 10 8 7 36 36 H 1.09003 * 109.47182 * 90.00258 * 17 16 15 37 37 H 1.09000 * 109.47266 * 209.99717 * 17 16 15 38 38 H 1.09000 * 109.47601 * 329.99906 * 17 16 15 39 39 H 1.08007 * 126.25698 * 180.02562 * 18 16 15 40 40 H 1.09003 * 109.47382 * 225.02494 * 20 19 18 41 41 H 0.96692 * 113.99882 * 299.99777 * 21 20 19 42 42 H 1.48497 * 110.00440 * 58.67929 * 22 20 19 43 43 H 1.48499 * 109.99738 * 180.02562 * 22 20 19 44 44 H 1.09004 * 109.46393 * 270.15352 * 24 23 19 45 45 H 1.08996 * 109.46718 * 30.14719 * 24 23 19 46 46 H 1.08994 * 109.47486 * 150.15407 * 24 23 19 47 47 H 1.08000 * 119.96376 * 180.23380 * 25 14 13 48 48 H 1.08004 * 119.80658 * 179.76405 * 26 25 14 49 49 H 1.07997 * 119.84770 * 179.97438 * 27 26 25 50 50 H 1.08007 * 120.03439 * 180.02562 * 28 27 26 51 51 H 1.09004 * 113.61263 * 270.88749 * 29 8 7 52 52 H 1.09000 * 113.69244 * 139.99244 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0239 0.6362 0.7550 7 6 4.1907 1.1236 -1.3978 8 6 5.1808 2.2268 -0.9886 9 1 6.0808 1.8481 -0.5040 10 7 5.4709 3.1840 -2.0590 11 6 6.6690 3.1622 -2.6760 12 8 7.5088 2.3479 -2.3446 13 6 6.9614 4.1268 -3.7539 14 6 8.2084 4.1116 -4.3945 15 7 9.1803 3.1828 -4.0160 16 6 10.1286 3.3702 -3.0501 17 6 10.3048 4.6114 -2.2138 18 6 10.8794 2.2531 -2.9748 19 6 10.3789 1.3414 -3.9267 20 6 10.9084 -0.0429 -4.1993 21 8 10.0198 -1.0116 -3.6387 22 14 12.5939 -0.2263 -3.4272 23 6 9.3371 1.9326 -4.5452 24 6 8.4936 1.3219 -5.6345 25 6 8.4707 5.0204 -5.4098 26 6 7.5104 5.9410 -5.7794 27 6 6.2790 5.9625 -5.1449 28 6 5.9997 5.0639 -4.1379 29 6 4.1079 2.7141 -0.0005 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 4.6610 0.1543 -1.5633 34 1 3.5227 1.4150 -2.2083 35 1 4.8008 3.8334 -2.3237 36 1 9.7052 4.5269 -1.3074 37 1 11.3553 4.7225 -1.9453 38 1 9.9813 5.4825 -2.7836 39 1 11.7116 2.0866 -2.3069 40 1 10.9828 -0.1981 -5.2756 41 1 9.9054 -0.9331 -2.6818 42 1 12.5114 0.0143 -1.9642 43 1 13.1273 -1.5872 -3.6894 44 1 8.9299 1.5553 -6.6057 45 1 8.4575 0.2405 -5.5028 46 1 7.4835 1.7282 -5.5828 47 1 9.4284 5.0102 -5.9088 48 1 7.7205 6.6489 -6.5675 49 1 5.5345 6.6866 -5.4409 50 1 5.0381 5.0842 -3.6465 51 1 3.4173 3.4404 -0.4291 52 1 4.5100 3.0293 0.9623 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_12335856.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:51:00 Heat of formation + Delta-G solvation = -29.186822 kcal Electronic energy + Delta-G solvation = -36779.510521 eV Core-core repulsion = 32099.282360 eV Total energy + Delta-G solvation = -4680.228161 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.177 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.85163 -42.03651 -41.02446 -39.81509 -38.84787 -37.79260 -37.47513 -34.91944 -34.09261 -33.55963 -32.27783 -30.42455 -30.09175 -29.39922 -27.36115 -26.91825 -26.89812 -25.04585 -24.57251 -23.57025 -22.63492 -21.72554 -21.09434 -20.75390 -20.22410 -19.03714 -18.80734 -18.08189 -17.81440 -17.54640 -17.49973 -17.09380 -16.62570 -16.28939 -16.15081 -15.93430 -15.89063 -15.73184 -15.36802 -14.97334 -14.76050 -14.68988 -14.49643 -14.28074 -14.23860 -14.11655 -14.03743 -13.74131 -13.63679 -13.44335 -13.33758 -13.23648 -13.09244 -13.04532 -12.88191 -12.73214 -12.58343 -12.47009 -12.32991 -12.11528 -11.89822 -11.86913 -11.64326 -11.48952 -11.01102 -10.45973 -10.30834 -10.12157 -10.00959 -9.51763 -8.64681 -4.84868 -0.41452 0.05465 1.00178 1.23612 1.45808 1.59312 1.69509 1.73608 1.88888 1.95916 2.05801 2.09619 2.60473 3.17275 3.25457 3.51832 3.58756 3.60307 3.64790 3.68754 3.79451 3.95809 3.97435 4.06988 4.19362 4.20757 4.21890 4.24663 4.25286 4.36819 4.40333 4.44958 4.50003 4.52817 4.56025 4.62616 4.64592 4.67993 4.70343 4.72115 4.75756 4.77516 4.85021 4.98165 4.99934 5.01196 5.06773 5.19763 5.25108 5.27823 5.29806 5.40620 5.46834 5.64368 6.14493 6.28804 6.38176 6.56489 6.59260 6.65896 7.09561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.105 4.105 6 H 0.149 0.851 7 C -0.128 4.128 8 C 0.131 3.869 9 H 0.112 0.888 10 N -0.705 5.705 11 C 0.547 3.453 12 O -0.541 6.541 13 C -0.146 4.146 14 C 0.145 3.855 15 N -0.390 5.390 16 C 0.032 3.968 17 C -0.077 4.077 18 C -0.205 4.205 19 C -0.204 4.204 20 C -0.047 4.047 21 O -0.552 6.552 22 Si 0.779 3.221 23 C 0.057 3.943 24 C -0.076 4.076 25 C -0.120 4.120 26 C -0.076 4.076 27 C -0.108 4.108 28 C -0.077 4.077 29 C -0.117 4.117 30 H 0.127 0.873 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.412 0.588 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.141 0.859 40 H 0.111 0.889 41 H 0.379 0.621 42 H -0.293 1.293 43 H -0.303 1.303 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.139 0.861 48 H 0.164 0.836 49 H 0.167 0.833 50 H 0.157 0.843 51 H 0.100 0.900 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 6.523 -2.542 7.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.317 3.683 4 O -0.424 6.424 5 C -0.124 4.124 6 H 0.166 0.834 7 C -0.167 4.167 8 C 0.025 3.975 9 H 0.130 0.870 10 N -0.358 5.358 11 C 0.334 3.666 12 O -0.418 6.418 13 C -0.150 4.150 14 C 0.054 3.946 15 N -0.065 5.065 16 C -0.076 4.076 17 C -0.135 4.135 18 C -0.229 4.229 19 C -0.210 4.210 20 C -0.157 4.157 21 O -0.360 6.360 22 Si 0.685 3.315 23 C -0.053 4.053 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.094 4.094 27 C -0.126 4.126 28 C -0.096 4.096 29 C -0.155 4.155 30 H 0.145 0.855 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.250 0.750 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.159 0.841 40 H 0.129 0.871 41 H 0.227 0.773 42 H -0.220 1.220 43 H -0.231 1.231 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.069 0.931 47 H 0.157 0.843 48 H 0.182 0.818 49 H 0.185 0.815 50 H 0.175 0.825 51 H 0.119 0.881 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.450 5.837 -2.430 6.780 hybrid contribution -1.673 -0.328 0.907 1.931 sum -4.122 5.508 -1.523 7.046 Atomic orbital electron populations 1.23535 0.74941 1.05596 1.02539 1.86524 1.24858 1.33225 1.83443 1.23917 0.92375 0.81042 0.70999 1.90663 1.67808 1.37249 1.46703 1.22407 0.86135 1.01715 1.02194 0.83369 1.23395 0.97676 1.01051 0.94590 1.22329 0.97428 0.89625 0.88075 0.87037 1.45755 1.15776 1.37015 1.37249 1.18448 0.82326 0.83690 0.82119 1.90903 1.46893 1.39144 1.64879 1.20231 0.95419 0.99898 0.99468 1.17816 0.87874 0.92166 0.96702 1.41017 1.24038 1.11423 1.29978 1.20464 0.92836 0.99097 0.95238 1.20280 1.03768 0.92078 0.97361 1.20595 1.04152 0.94180 1.03955 1.19487 1.01262 0.97398 1.02896 1.24484 1.03135 0.84683 1.03365 1.86493 1.66739 1.55488 1.27247 0.93924 0.77928 0.80861 0.78767 1.20220 0.99542 0.84968 1.00602 1.20228 0.97099 1.00677 0.95366 1.21493 1.01602 0.94902 0.95941 1.21695 0.92251 0.96642 0.98856 1.21675 0.97754 0.98531 0.94618 1.21598 0.98483 0.92788 0.96760 1.23320 0.96424 0.94594 1.01121 0.85509 0.91922 0.91889 0.89463 0.89181 0.75027 0.92226 0.88709 0.91634 0.84124 0.87081 0.77304 1.21960 1.23150 0.89913 0.90658 0.93051 0.84284 0.81814 0.81532 0.82542 0.88128 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.36 -1.07 10.56 -51.36 -0.54 -1.61 16 3 C 0.47 1.56 7.48 71.23 0.53 2.09 16 4 O -0.53 -4.55 15.65 21.94 0.34 -4.20 16 5 C -0.11 0.24 4.26 -11.01 -0.05 0.20 16 6 H 0.15 -0.85 8.14 -2.39 -0.02 -0.87 16 7 C -0.13 0.24 7.43 31.12 0.23 0.47 16 8 C 0.13 -0.19 4.24 45.51 0.19 0.00 16 9 H 0.11 0.20 7.46 -2.38 -0.02 0.18 16 10 N -0.71 1.01 5.31 -443.17 -2.35 -1.34 16 11 C 0.55 2.65 7.77 86.71 0.67 3.32 16 12 O -0.54 -6.76 13.27 -3.98 -0.05 -6.81 16 13 C -0.15 -0.22 5.89 -19.99 -0.12 -0.34 16 14 C 0.14 0.51 4.52 38.50 0.17 0.68 16 15 N -0.39 -2.97 1.46 -319.55 -0.47 -3.43 16 16 C 0.03 0.27 6.01 41.02 0.25 0.51 16 17 C -0.08 -0.25 10.09 71.23 0.72 0.47 16 18 C -0.21 -1.84 9.27 22.16 0.21 -1.64 16 19 C -0.20 -1.91 5.35 -19.98 -0.11 -2.01 16 20 C -0.05 -0.35 2.50 71.24 0.18 -0.17 16 21 O -0.55 -5.88 12.88 -148.98 -1.92 -7.80 16 22 Si 0.78 3.78 30.86 68.60 2.12 5.90 16 23 C 0.06 0.53 5.97 41.02 0.24 0.78 16 24 C -0.08 -0.48 9.87 71.24 0.70 0.22 16 25 C -0.12 0.18 9.96 22.36 0.22 0.40 16 26 C -0.08 0.52 10.03 22.30 0.22 0.74 16 27 C -0.11 0.89 10.02 22.24 0.22 1.12 16 28 C -0.08 0.43 9.53 22.52 0.21 0.65 16 29 C -0.12 0.42 7.16 31.12 0.22 0.64 16 30 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 32 H 0.06 -0.05 8.13 -2.38 -0.02 -0.07 16 33 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.09 -0.14 8.09 -2.39 -0.02 -0.16 16 35 H 0.41 -2.76 6.76 -92.71 -0.63 -3.39 16 36 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.06 0.10 7.83 -2.39 -0.02 0.09 16 39 H 0.14 0.96 6.52 -2.91 -0.02 0.94 16 40 H 0.11 0.59 7.96 -2.39 -0.02 0.57 16 41 H 0.38 2.77 8.70 -74.06 -0.64 2.13 16 42 H -0.29 -2.81 7.01 99.48 0.70 -2.11 16 43 H -0.30 -3.32 7.11 99.48 0.71 -2.61 16 44 H 0.08 0.23 8.14 -2.38 -0.02 0.21 16 45 H 0.07 0.62 7.87 -2.39 -0.02 0.60 16 46 H 0.05 0.35 7.83 -2.39 -0.02 0.33 16 47 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 48 H 0.16 -1.98 8.06 -2.91 -0.02 -2.00 16 49 H 0.17 -2.32 8.06 -2.91 -0.02 -2.34 16 50 H 0.16 -1.75 6.40 -2.91 -0.02 -1.77 16 51 H 0.10 -0.27 7.41 -2.38 -0.02 -0.29 16 52 H 0.10 -0.51 8.14 -2.39 -0.02 -0.52 16 Total: 0.00 -25.25 432.30 2.98 -22.26 By element: Atomic # 1 Polarization: -11.96 SS G_CDS: -0.28 Total: -12.24 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 6.13 Total: 9.28 kcal Atomic # 7 Polarization: -1.96 SS G_CDS: -2.82 Total: -4.77 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -2.17 Total: -20.43 kcal Atomic # 14 Polarization: 3.78 SS G_CDS: 2.12 Total: 5.90 kcal Total: -25.25 2.98 -22.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_12335856.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.924 kcal (2) G-P(sol) polarization free energy of solvation -25.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds