Wall clock time and date at job start Tue Mar 9 2021 13:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00255 * 2 1 4 4 Si 1.86299 * 109.46987 * 269.99989 * 3 2 1 5 5 C 1.86302 * 109.47133 * 60.00186 * 4 3 2 6 6 C 1.86305 * 109.47176 * 179.97438 * 4 3 2 7 7 C 1.86292 * 109.47224 * 299.99864 * 4 3 2 8 8 C 1.34774 * 119.99740 * 180.02562 * 2 1 3 9 9 O 1.21287 * 119.99778 * 180.02562 * 8 2 1 10 10 C 1.50704 * 120.00211 * 0.02562 * 8 2 1 11 11 O 1.42900 * 109.46992 * 180.02562 * 10 8 2 12 12 C 1.35914 * 116.99871 * 180.02562 * 11 10 8 13 13 C 1.38678 * 120.06015 * 359.97438 * 12 11 10 14 14 C 1.38181 * 119.95680 * 179.97438 * 13 12 11 15 15 C 1.38241 * 120.07059 * 0.03195 * 14 13 12 16 16 C 1.50706 * 119.93825 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.46938 * 299.99525 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 179.97438 * 16 15 14 19 19 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 20 20 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 22 22 C 1.38279 * 120.12009 * 0.24319 * 15 14 13 23 23 C 1.38197 * 120.04539 * 359.46139 * 22 15 14 24 24 Br 1.89099 * 120.04178 * 180.25362 * 23 22 15 25 25 H 1.08997 * 109.47621 * 269.99976 * 1 2 3 26 26 H 1.09004 * 109.47196 * 30.00247 * 1 2 3 27 27 H 1.09004 * 109.47307 * 149.99720 * 1 2 3 28 28 H 1.09004 * 109.46955 * 29.99758 * 3 2 1 29 29 H 1.08991 * 109.47500 * 149.99961 * 3 2 1 30 30 H 1.08992 * 109.47408 * 59.99399 * 5 4 3 31 31 H 1.09001 * 109.47383 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.46597 * 299.99462 * 5 4 3 33 33 H 1.09003 * 109.46383 * 59.99964 * 6 4 3 34 34 H 1.08992 * 109.47205 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.47347 * 300.00796 * 6 4 3 36 36 H 1.08998 * 109.47446 * 59.99966 * 7 4 3 37 37 H 1.09005 * 109.47299 * 180.02562 * 7 4 3 38 38 H 1.09000 * 109.47238 * 299.99780 * 7 4 3 39 39 H 1.08994 * 109.46996 * 60.00301 * 10 8 2 40 40 H 1.09001 * 109.46965 * 299.99543 * 10 8 2 41 41 H 1.07999 * 120.02210 * 359.96235 * 13 12 11 42 42 H 1.07999 * 119.96701 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.47161 * 59.99791 * 16 15 14 44 44 H 0.96698 * 114.00355 * 299.99977 * 17 16 15 45 45 H 1.07998 * 119.98018 * 179.72434 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 14 2.5080 1.8064 -1.7565 5 6 0.8802 2.0293 -2.6347 6 6 3.4390 3.4202 -1.7565 7 6 3.5148 0.5081 -2.6346 8 6 2.1388 -1.1672 -0.0005 9 8 3.3517 -1.1672 -0.0001 10 6 1.3853 -2.4723 -0.0017 11 8 2.3139 -3.5585 -0.0015 12 6 1.7944 -4.8144 -0.0030 13 6 0.4198 -4.9975 -0.0041 14 6 -0.1061 -6.2754 -0.0062 15 6 0.7366 -7.3712 -0.0064 16 6 0.1599 -8.7636 -0.0081 17 8 -0.6456 -8.9468 1.1579 18 14 1.5451 -10.0094 -0.0089 19 1 2.3808 -9.8212 1.2042 20 1 0.9768 -11.3814 -0.0099 21 1 2.3818 -9.8187 -1.2209 22 6 2.1078 -7.1922 0.0004 23 6 2.6390 -5.9164 -0.0036 24 35 4.5141 -5.6717 -0.0015 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 0.2911 2.7889 -2.1209 31 1 1.0618 2.3435 -3.6625 32 1 0.3352 1.0853 -2.6347 33 1 4.3914 3.2902 -1.2425 34 1 3.6210 3.7346 -2.7841 35 1 2.8496 4.1797 -1.2427 36 1 2.9699 -0.4359 -2.6347 37 1 3.6969 0.8229 -3.6622 38 1 4.4673 0.3778 -2.1209 39 1 0.7590 -2.5295 -0.8919 40 1 0.7583 -2.5307 0.8881 41 1 -0.2393 -4.1420 -0.0032 42 1 -1.1766 -6.4182 -0.0075 43 1 -0.4532 -8.9018 -0.8987 44 1 -0.1642 -8.8384 1.9895 45 1 2.7640 -8.0499 0.0047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11678528_6201210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:07 Heat of formation + Delta-G solvation = -104.178685 kcal Electronic energy + Delta-G solvation = -25884.309631 eV Core-core repulsion = 22072.656516 eV Total energy + Delta-G solvation = -3811.653115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 389.062 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.73043 -40.69806 -39.16135 -37.30970 -36.56831 -33.49070 -32.24572 -30.90725 -30.05042 -29.56644 -28.87466 -28.39830 -28.15234 -26.76453 -26.04877 -23.92417 -22.45196 -20.51144 -19.67010 -18.50873 -17.96595 -17.76752 -17.41568 -16.75283 -16.62981 -16.38245 -16.17639 -15.72402 -15.09851 -14.91721 -14.55730 -14.51384 -14.30925 -14.21582 -14.09140 -14.00046 -13.86513 -13.79929 -13.68266 -13.45128 -13.30378 -13.20600 -13.07006 -12.98745 -12.49248 -12.31976 -12.31453 -12.15680 -11.79977 -11.72598 -11.69953 -11.05167 -10.99750 -10.84537 -10.73022 -10.51812 -10.01602 -9.33538 -9.30110 -0.06824 0.03969 0.70934 1.08704 1.24704 1.39327 1.39551 1.46375 1.70126 1.80622 1.86148 1.87555 2.34892 2.35456 2.56277 3.22763 3.36483 3.44674 3.59474 3.68123 3.76861 3.85220 3.92051 3.98889 4.21312 4.24521 4.30154 4.40806 4.48144 4.55805 4.60541 4.61015 4.68135 4.69806 4.73394 4.82248 4.88125 4.92833 4.96016 5.22546 5.24855 5.36836 5.38885 5.47072 5.67783 5.97541 6.17885 6.46065 7.07720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.596 5.596 3 C -0.177 4.177 4 Si 0.998 3.002 5 C -0.446 4.446 6 C -0.448 4.448 7 C -0.440 4.440 8 C 0.507 3.493 9 O -0.500 6.500 10 C 0.038 3.962 11 O -0.274 6.274 12 C 0.162 3.838 13 C -0.205 4.205 14 C -0.032 4.032 15 C -0.153 4.153 16 C -0.072 4.072 17 O -0.538 6.538 18 Si 0.935 3.065 19 H -0.247 1.247 20 H -0.249 1.249 21 H -0.246 1.246 22 C -0.058 4.058 23 C -0.119 4.119 24 Br -0.025 7.025 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.121 0.879 44 H 0.378 0.622 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 2.315 -0.221 6.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.332 5.332 3 C -0.345 4.345 4 Si 1.193 2.807 5 C -0.554 4.554 6 C -0.556 4.556 7 C -0.548 4.548 8 C 0.293 3.707 9 O -0.374 6.374 10 C -0.040 4.040 11 O -0.185 6.185 12 C 0.113 3.887 13 C -0.224 4.224 14 C -0.050 4.050 15 C -0.154 4.154 16 C -0.183 4.183 17 O -0.343 6.343 18 Si 0.757 3.243 19 H -0.171 1.171 20 H -0.173 1.173 21 H -0.170 1.170 22 C -0.077 4.077 23 C -0.199 4.199 24 Br 0.061 6.939 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.139 0.861 44 H 0.225 0.775 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.501 1.756 -0.625 4.872 hybrid contribution -0.708 0.521 0.447 0.986 sum -5.210 2.277 -0.177 5.688 Atomic orbital electron populations 1.22030 0.79134 1.04041 1.02671 1.47319 1.06837 1.05106 1.73940 1.26579 1.00908 0.87242 1.19811 0.79633 0.67679 0.67313 0.66052 1.26140 1.16525 1.04419 1.08312 1.26078 1.08669 1.16148 1.04741 1.26061 1.09687 1.11654 1.07386 1.19861 0.88207 0.84386 0.78258 1.90784 1.13089 1.86488 1.47033 1.22625 0.92110 0.85305 1.03986 1.86280 1.33646 1.10953 1.87619 1.18640 0.91463 0.84140 0.94410 1.21294 0.92820 0.99231 1.09098 1.20936 1.00547 0.90502 0.93064 1.20227 0.92548 0.96924 1.05733 1.24851 1.04134 0.97196 0.92109 1.86514 1.38807 1.93621 1.15348 0.85878 0.77003 0.79085 0.82335 1.17075 1.17301 1.16995 1.20885 0.94994 0.95081 0.96755 1.20976 0.91757 0.93223 1.13967 1.96810 1.01674 1.97786 1.97657 0.91907 0.89751 0.90881 0.89588 0.88726 0.91198 0.90991 0.91339 0.90991 0.90943 0.91170 0.91842 0.91665 0.90782 0.88634 0.88649 0.84314 0.84243 0.86096 0.77516 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.30 10.00 59.85 0.60 0.29 16 2 N -0.60 0.78 2.38 -119.16 -0.28 0.50 16 3 C -0.18 0.26 4.65 59.85 0.28 0.54 16 4 Si 1.00 -2.24 12.32 -169.99 -2.09 -4.33 16 5 C -0.45 1.18 7.97 101.05 0.80 1.98 16 6 C -0.45 0.67 8.65 101.05 0.87 1.54 16 7 C -0.44 -0.40 8.18 101.05 0.83 0.43 16 8 C 0.51 0.75 7.30 -10.98 -0.08 0.67 16 9 O -0.50 -2.89 15.52 -14.36 -0.22 -3.12 16 10 C 0.04 -0.03 3.77 36.01 0.14 0.10 16 11 O -0.27 -0.77 9.01 -39.38 -0.35 -1.13 16 12 C 0.16 0.29 6.68 -39.20 -0.26 0.03 16 13 C -0.20 0.18 9.04 -39.44 -0.36 -0.17 16 14 C -0.03 0.03 9.60 -39.60 -0.38 -0.35 16 15 C -0.15 0.05 5.39 -104.60 -0.56 -0.51 16 16 C -0.07 0.10 2.82 36.01 0.10 0.20 16 17 O -0.54 0.44 12.77 -35.23 -0.45 -0.01 16 18 Si 0.93 -0.71 25.07 -169.99 -4.26 -4.97 16 19 H -0.25 0.09 7.11 56.52 0.40 0.50 16 20 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 21 H -0.25 0.01 7.11 56.52 0.40 0.41 16 22 C -0.06 -0.06 8.40 -39.58 -0.33 -0.39 16 23 C -0.12 -0.31 6.24 -39.37 -0.25 -0.56 16 24 Br -0.02 -0.10 33.16 -68.01 -2.26 -2.35 16 25 H 0.06 -0.34 8.14 -51.93 -0.42 -0.76 16 26 H 0.08 -0.48 6.82 -51.93 -0.35 -0.84 16 27 H 0.07 -0.47 6.44 -51.93 -0.33 -0.80 16 28 H 0.09 -0.29 7.89 -51.93 -0.41 -0.70 16 29 H 0.09 0.04 7.24 -51.93 -0.38 -0.34 16 30 H 0.07 -0.23 7.96 -51.93 -0.41 -0.64 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.20 7.46 -51.92 -0.39 -0.59 16 33 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 36 H 0.06 0.12 7.77 -51.93 -0.40 -0.28 16 37 H 0.06 0.03 7.96 -51.93 -0.41 -0.39 16 38 H 0.07 0.19 7.96 -51.93 -0.41 -0.23 16 39 H 0.10 -0.34 6.92 -51.93 -0.36 -0.70 16 40 H 0.10 -0.32 7.63 -51.93 -0.40 -0.71 16 41 H 0.14 -0.53 6.30 -52.49 -0.33 -0.86 16 42 H 0.14 -0.36 8.06 -52.49 -0.42 -0.79 16 43 H 0.12 -0.29 7.96 -51.93 -0.41 -0.70 16 44 H 0.38 -1.41 8.70 45.56 0.40 -1.02 16 45 H 0.14 0.04 4.87 -52.49 -0.26 -0.22 16 LS Contribution 388.20 15.07 5.85 5.85 Total: 0.00 -8.43 388.20 -8.83 -17.26 By element: Atomic # 1 Polarization: -5.34 SS G_CDS: -6.16 Total: -11.50 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 1.40 Total: 3.80 kcal Atomic # 7 Polarization: 0.78 SS G_CDS: -0.28 Total: 0.50 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: -1.03 Total: -4.25 kcal Atomic # 14 Polarization: -2.95 SS G_CDS: -6.36 Total: -9.30 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.26 Total: -2.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -8.43 -8.83 -17.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11678528_6201210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.919 kcal (2) G-P(sol) polarization free energy of solvation -8.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds