Wall clock time and date at job start Tue Mar 9 2021 13:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00255 * 2 1 4 4 Si 1.86299 * 109.46987 * 269.99989 * 3 2 1 5 5 C 1.86302 * 109.47133 * 60.00186 * 4 3 2 6 6 C 1.86305 * 109.47176 * 179.97438 * 4 3 2 7 7 C 1.86292 * 109.47224 * 299.99864 * 4 3 2 8 8 C 1.34774 * 119.99740 * 180.02562 * 2 1 3 9 9 O 1.21287 * 119.99778 * 180.02562 * 8 2 1 10 10 C 1.50704 * 120.00211 * 0.02562 * 8 2 1 11 11 O 1.42900 * 109.46992 * 180.02562 * 10 8 2 12 12 C 1.35914 * 116.99871 * 180.02562 * 11 10 8 13 13 C 1.38678 * 120.06015 * 359.97438 * 12 11 10 14 14 C 1.38181 * 119.95680 * 179.97438 * 13 12 11 15 15 C 1.38241 * 120.07059 * 0.03195 * 14 13 12 16 16 C 1.50706 * 119.93825 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.46938 * 299.99525 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 179.97438 * 16 15 14 19 19 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 20 20 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 22 22 C 1.38279 * 120.12009 * 0.24319 * 15 14 13 23 23 C 1.38197 * 120.04539 * 359.46139 * 22 15 14 24 24 Br 1.89099 * 120.04178 * 180.25362 * 23 22 15 25 25 H 1.08997 * 109.47621 * 269.99976 * 1 2 3 26 26 H 1.09004 * 109.47196 * 30.00247 * 1 2 3 27 27 H 1.09004 * 109.47307 * 149.99720 * 1 2 3 28 28 H 1.09004 * 109.46955 * 29.99758 * 3 2 1 29 29 H 1.08991 * 109.47500 * 149.99961 * 3 2 1 30 30 H 1.08992 * 109.47408 * 59.99399 * 5 4 3 31 31 H 1.09001 * 109.47383 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.46597 * 299.99462 * 5 4 3 33 33 H 1.09003 * 109.46383 * 59.99964 * 6 4 3 34 34 H 1.08992 * 109.47205 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.47347 * 300.00796 * 6 4 3 36 36 H 1.08998 * 109.47446 * 59.99966 * 7 4 3 37 37 H 1.09005 * 109.47299 * 180.02562 * 7 4 3 38 38 H 1.09000 * 109.47238 * 299.99780 * 7 4 3 39 39 H 1.08994 * 109.46996 * 60.00301 * 10 8 2 40 40 H 1.09001 * 109.46965 * 299.99543 * 10 8 2 41 41 H 1.07999 * 120.02210 * 359.96235 * 13 12 11 42 42 H 1.07999 * 119.96701 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.47161 * 59.99791 * 16 15 14 44 44 H 0.96698 * 114.00355 * 299.99977 * 17 16 15 45 45 H 1.07998 * 119.98018 * 179.72434 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 14 2.5080 1.8064 -1.7565 5 6 0.8802 2.0293 -2.6347 6 6 3.4390 3.4202 -1.7565 7 6 3.5148 0.5081 -2.6346 8 6 2.1388 -1.1672 -0.0005 9 8 3.3517 -1.1672 -0.0001 10 6 1.3853 -2.4723 -0.0017 11 8 2.3139 -3.5585 -0.0015 12 6 1.7944 -4.8144 -0.0030 13 6 0.4198 -4.9975 -0.0041 14 6 -0.1061 -6.2754 -0.0062 15 6 0.7366 -7.3712 -0.0064 16 6 0.1599 -8.7636 -0.0081 17 8 -0.6456 -8.9468 1.1579 18 14 1.5451 -10.0094 -0.0089 19 1 2.3808 -9.8212 1.2042 20 1 0.9768 -11.3814 -0.0099 21 1 2.3818 -9.8187 -1.2209 22 6 2.1078 -7.1922 0.0004 23 6 2.6390 -5.9164 -0.0036 24 35 4.5141 -5.6717 -0.0015 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 0.2911 2.7889 -2.1209 31 1 1.0618 2.3435 -3.6625 32 1 0.3352 1.0853 -2.6347 33 1 4.3914 3.2902 -1.2425 34 1 3.6210 3.7346 -2.7841 35 1 2.8496 4.1797 -1.2427 36 1 2.9699 -0.4359 -2.6347 37 1 3.6969 0.8229 -3.6622 38 1 4.4673 0.3778 -2.1209 39 1 0.7590 -2.5295 -0.8919 40 1 0.7583 -2.5307 0.8881 41 1 -0.2393 -4.1420 -0.0032 42 1 -1.1766 -6.4182 -0.0075 43 1 -0.4532 -8.9018 -0.8987 44 1 -0.1642 -8.8384 1.9895 45 1 2.7640 -8.0499 0.0047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11678528_6201210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:07 Heat of formation + Delta-G solvation = -99.094233 kcal Electronic energy + Delta-G solvation = -25884.089153 eV Core-core repulsion = 22072.656516 eV Total energy + Delta-G solvation = -3811.432636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 389.062 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.71258 -40.68222 -39.13432 -37.23212 -36.54157 -33.52598 -32.19416 -30.87717 -30.06731 -29.46668 -28.65278 -28.38823 -27.94604 -26.66331 -25.93371 -23.88426 -22.41039 -20.44048 -19.62753 -18.43092 -17.89762 -17.68816 -17.39833 -16.68094 -16.55603 -16.30085 -16.06416 -15.69114 -15.09512 -14.84369 -14.50807 -14.46308 -14.18036 -14.11397 -13.97689 -13.83032 -13.79529 -13.73923 -13.47562 -13.37884 -13.24143 -13.02990 -12.94407 -12.86513 -12.41790 -12.32365 -12.24331 -12.16250 -11.89771 -11.69600 -11.61091 -11.25050 -10.96048 -10.75649 -10.73226 -10.43728 -10.02565 -9.32841 -9.21407 -0.05550 0.06532 0.59728 1.16248 1.34758 1.41381 1.43084 1.48301 1.81216 1.89439 1.94635 2.00544 2.38952 2.47862 2.66496 3.35501 3.47473 3.56099 3.76820 3.77845 3.97858 4.01834 4.05732 4.30794 4.34713 4.42632 4.50014 4.67402 4.69197 4.70132 4.73407 4.78187 4.79140 4.81303 4.86849 4.89300 4.98652 5.02522 5.04153 5.28938 5.40818 5.48692 5.52450 5.59020 5.66535 6.04445 6.30045 6.70382 7.11329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.590 5.590 3 C -0.191 4.191 4 Si 1.060 2.940 5 C -0.443 4.443 6 C -0.461 4.461 7 C -0.464 4.464 8 C 0.496 3.504 9 O -0.561 6.561 10 C 0.033 3.967 11 O -0.305 6.305 12 C 0.148 3.852 13 C -0.194 4.194 14 C -0.026 4.026 15 C -0.151 4.151 16 C -0.057 4.057 17 O -0.546 6.546 18 Si 0.952 3.048 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.261 1.261 22 C -0.068 4.068 23 C -0.142 4.142 24 Br -0.055 7.055 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.174 0.826 42 H 0.165 0.835 43 H 0.138 0.862 44 H 0.389 0.611 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 3.324 -0.183 10.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.323 5.323 3 C -0.359 4.359 4 Si 1.252 2.748 5 C -0.552 4.552 6 C -0.568 4.568 7 C -0.568 4.568 8 C 0.283 3.717 9 O -0.440 6.440 10 C -0.044 4.044 11 O -0.218 6.218 12 C 0.100 3.900 13 C -0.213 4.213 14 C -0.044 4.044 15 C -0.153 4.153 16 C -0.169 4.169 17 O -0.353 6.353 18 Si 0.778 3.222 19 H -0.181 1.181 20 H -0.192 1.192 21 H -0.186 1.186 22 C -0.088 4.088 23 C -0.222 4.222 24 Br 0.030 6.970 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.192 0.808 42 H 0.182 0.818 43 H 0.155 0.845 44 H 0.239 0.761 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.446 2.756 -0.582 8.904 hybrid contribution 0.513 0.197 0.446 0.708 sum -7.933 2.953 -0.135 8.466 Atomic orbital electron populations 1.22404 0.76521 1.06059 1.04116 1.47449 1.08432 1.04250 1.72199 1.26749 1.00511 0.87983 1.20614 0.78708 0.67066 0.64515 0.64527 1.26067 1.15682 1.05459 1.08015 1.26229 1.08606 1.17326 1.04683 1.26472 1.09256 1.13063 1.07965 1.20435 0.87800 0.85898 0.77587 1.90760 1.15654 1.87409 1.50140 1.22914 0.91634 0.83114 1.06767 1.86246 1.35662 1.11916 1.87929 1.18832 0.92511 0.83561 0.95076 1.21649 0.91787 1.00595 1.07296 1.21248 1.01578 0.89978 0.91639 1.20347 0.91882 0.97828 1.05200 1.24681 1.03575 0.95895 0.92768 1.86490 1.39242 1.93553 1.16035 0.85640 0.76969 0.78418 0.81148 1.18131 1.19239 1.18568 1.20940 0.95897 0.94501 0.97445 1.21125 0.90440 0.94487 1.16167 1.96757 1.04482 1.97893 1.97843 0.90711 0.88148 0.88619 0.87041 0.91327 0.89557 0.91232 0.90463 0.92068 0.91082 0.89934 0.93168 0.91675 0.93525 0.85471 0.85719 0.80827 0.81788 0.84479 0.76139 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.62 10.00 127.77 1.28 0.65 16 2 N -0.59 1.97 2.38 -649.29 -1.54 0.43 16 3 C -0.19 0.55 4.65 127.77 0.59 1.14 16 4 Si 1.06 -4.62 12.32 68.60 0.85 -3.77 16 5 C -0.44 3.31 7.97 113.37 0.90 4.21 16 6 C -0.46 1.23 8.65 113.37 0.98 2.21 16 7 C -0.46 -2.04 8.18 113.37 0.93 -1.11 16 8 C 0.50 1.80 7.30 87.66 0.64 2.44 16 9 O -0.56 -8.20 15.52 15.99 0.25 -7.95 16 10 C 0.03 -0.09 3.77 71.24 0.27 0.18 16 11 O -0.31 -1.95 9.01 -73.54 -0.66 -2.61 16 12 C 0.15 0.52 6.68 22.52 0.15 0.67 16 13 C -0.19 0.81 9.04 22.36 0.20 1.01 16 14 C -0.03 0.12 9.60 22.26 0.21 0.34 16 15 C -0.15 0.26 5.39 -19.85 -0.11 0.15 16 16 C -0.06 0.22 2.82 71.24 0.20 0.42 16 17 O -0.55 1.80 12.77 -148.98 -1.90 -0.10 16 18 Si 0.95 -0.78 25.07 68.60 1.72 0.94 16 19 H -0.26 -0.14 7.11 99.48 0.71 0.57 16 20 H -0.27 -0.56 7.11 99.48 0.71 0.15 16 21 H -0.26 -0.38 7.11 99.48 0.71 0.33 16 22 C -0.07 -0.19 8.40 22.27 0.19 0.00 16 23 C -0.14 -0.93 6.24 22.40 0.14 -0.79 16 24 Br -0.05 -0.58 33.16 -20.37 -0.68 -1.25 16 25 H 0.07 -1.05 8.14 -2.39 -0.02 -1.07 16 26 H 0.10 -1.52 6.82 -2.39 -0.02 -1.54 16 27 H 0.10 -1.61 6.44 -2.38 -0.02 -1.62 16 28 H 0.11 -0.93 7.89 -2.38 -0.02 -0.95 16 29 H 0.07 0.20 7.24 -2.39 -0.02 0.19 16 30 H 0.09 -0.86 7.96 -2.39 -0.02 -0.88 16 31 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 32 H 0.08 -0.66 7.46 -2.38 -0.02 -0.68 16 33 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 34 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 35 H 0.08 -0.42 7.96 -2.39 -0.02 -0.43 16 36 H 0.05 0.33 7.77 -2.39 -0.02 0.31 16 37 H 0.06 0.21 7.96 -2.38 -0.02 0.19 16 38 H 0.05 0.44 7.96 -2.39 -0.02 0.42 16 39 H 0.13 -1.25 6.92 -2.39 -0.02 -1.26 16 40 H 0.13 -1.15 7.63 -2.39 -0.02 -1.16 16 41 H 0.17 -2.07 6.30 -2.91 -0.02 -2.08 16 42 H 0.16 -1.53 8.06 -2.91 -0.02 -1.55 16 43 H 0.14 -0.93 7.96 -2.39 -0.02 -0.95 16 44 H 0.39 -3.40 8.70 -74.06 -0.64 -4.05 16 45 H 0.13 0.30 4.87 -2.91 -0.01 0.29 16 Total: 0.00 -24.97 388.20 5.72 -19.24 By element: Atomic # 1 Polarization: -17.56 SS G_CDS: 1.11 Total: -16.45 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.58 Total: 11.52 kcal Atomic # 7 Polarization: 1.97 SS G_CDS: -1.54 Total: 0.43 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -2.32 Total: -10.67 kcal Atomic # 14 Polarization: -5.39 SS G_CDS: 2.56 Total: -2.83 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -0.68 Total: -1.25 kcal Total: -24.97 5.72 -19.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11678528_6201210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.850 kcal (2) G-P(sol) polarization free energy of solvation -24.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds