Wall clock time and date at job start Tue Mar 9 2021 13:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86301 * 109.47070 * 2 1 4 4 C 1.86305 * 109.47207 * 240.00440 * 2 1 3 5 5 C 1.86296 * 109.47452 * 120.00145 * 2 1 3 6 6 C 1.52997 * 109.46850 * 59.99764 * 5 2 1 7 7 C 1.50704 * 109.47012 * 180.02562 * 6 5 2 8 8 C 1.38279 * 119.92860 * 90.00324 * 7 6 5 9 9 C 1.38115 * 120.06902 * 180.02562 * 8 7 6 10 10 C 1.38871 * 119.93038 * 359.97414 * 9 8 7 11 11 N 1.39928 * 120.07108 * 180.02562 * 10 9 8 12 12 C 1.34770 * 120.00026 * 33.37552 * 11 10 9 13 13 O 1.21288 * 120.00264 * 5.09466 * 12 11 10 14 14 C 1.50701 * 119.99731 * 185.09368 * 12 11 10 15 15 O 1.42902 * 109.47126 * 179.97438 * 14 12 11 16 16 C 1.35913 * 117.00183 * 180.02562 * 15 14 12 17 17 C 1.38681 * 120.05884 * 359.72877 * 16 15 14 18 18 C 1.38187 * 119.95138 * 179.71710 * 17 16 15 19 19 C 1.38235 * 120.07488 * 0.53878 * 18 17 16 20 20 C 1.50704 * 119.94265 * 179.74144 * 19 18 17 21 21 O 1.42904 * 109.47072 * 120.01735 * 20 19 18 22 22 Si 1.86297 * 109.47067 * 0.02562 * 20 19 18 23 23 H 1.48504 * 109.47354 * 59.99938 * 22 20 19 24 24 H 1.48499 * 109.47234 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47218 * 300.00278 * 22 20 19 26 26 C 1.38286 * 120.11646 * 359.75747 * 19 18 17 27 27 C 1.38193 * 120.04695 * 359.96366 * 26 19 18 28 28 Br 1.89097 * 120.03662 * 179.97438 * 27 26 19 29 29 C 1.38872 * 119.85913 * 0.27262 * 10 9 8 30 30 C 1.38120 * 119.92707 * 359.47729 * 29 10 9 31 31 H 1.08997 * 109.46645 * 300.00331 * 1 2 3 32 32 H 1.09000 * 109.46865 * 60.00003 * 1 2 3 33 33 H 1.08997 * 109.47299 * 179.97438 * 1 2 3 34 34 H 1.09010 * 109.47256 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47274 * 299.99747 * 3 2 1 36 36 H 1.09002 * 109.47000 * 60.00035 * 3 2 1 37 37 H 1.09000 * 109.46801 * 299.99574 * 4 2 1 38 38 H 1.08996 * 109.47142 * 59.99759 * 4 2 1 39 39 H 1.08999 * 109.47146 * 180.02562 * 4 2 1 40 40 H 1.09002 * 109.46928 * 300.00155 * 5 2 1 41 41 H 1.08993 * 109.47293 * 180.02562 * 5 2 1 42 42 H 1.09002 * 109.47036 * 60.00457 * 6 5 2 43 43 H 1.08999 * 109.47369 * 299.99780 * 6 5 2 44 44 H 1.07999 * 119.96791 * 0.02562 * 8 7 6 45 45 H 1.08004 * 120.03402 * 179.97438 * 9 8 7 46 46 H 0.97003 * 119.99494 * 213.10316 * 11 10 9 47 47 H 1.08993 * 109.47694 * 300.00457 * 14 12 11 48 48 H 1.09007 * 109.46919 * 60.00797 * 14 12 11 49 49 H 1.08001 * 120.02201 * 359.97438 * 17 16 15 50 50 H 1.08001 * 119.96013 * 180.27363 * 18 17 16 51 51 H 1.08996 * 109.47119 * 240.01718 * 20 19 18 52 52 H 0.96698 * 114.00090 * 300.00323 * 21 20 19 53 53 H 1.08003 * 119.98000 * 179.97438 * 26 19 18 54 54 H 1.08002 * 120.03803 * 179.70145 * 29 10 9 55 55 H 1.07997 * 119.96366 * 180.24641 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4841 -0.8782 1.5210 6 6 1.9741 -2.3207 1.5210 7 6 2.4760 -3.0310 2.7518 8 6 1.7270 -3.0102 3.9140 9 6 2.1844 -3.6597 5.0438 10 6 3.3977 -4.3346 5.0115 11 7 3.8637 -4.9941 6.1543 12 6 2.9895 -5.5654 7.0062 13 8 1.8072 -5.5889 6.7367 14 6 3.4811 -6.1751 8.2937 15 8 2.3736 -6.7121 9.0198 16 6 2.6461 -7.3022 10.2134 17 6 3.9527 -7.3682 10.6735 18 6 4.2266 -7.9635 11.8901 19 6 3.2010 -8.5032 12.6437 20 6 3.5038 -9.1569 13.9674 21 8 2.8012 -8.4740 15.0077 22 14 5.3355 -9.0732 14.2968 23 1 5.7670 -7.6527 14.3360 24 1 5.6338 -9.7168 15.6014 25 1 6.0658 -9.7826 13.2158 26 6 1.8978 -8.4445 12.1850 27 6 1.6176 -7.8452 10.9717 28 35 -0.1645 -7.7657 10.3443 29 6 4.1499 -4.3493 3.8443 30 6 3.6844 -3.7022 2.7163 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.5741 1.7565 -0.0005 35 1 2.1207 2.2703 -0.8900 36 1 2.1206 2.2703 0.8900 37 1 2.1208 -1.9058 -1.5212 38 1 2.1207 -0.3643 -2.4111 39 1 3.5740 -0.8785 -1.5210 40 1 2.1207 -0.3644 2.4110 41 1 3.5740 -0.8778 1.5212 42 1 2.3374 -2.8345 0.6310 43 1 0.8841 -2.3207 1.5211 44 1 0.7833 -2.4855 3.9383 45 1 1.5992 -3.6427 5.9513 46 1 4.8162 -5.0435 6.3312 47 1 4.1906 -6.9719 8.0709 48 1 3.9717 -5.4091 8.8944 49 1 4.7551 -6.9509 10.0832 50 1 5.2436 -8.0110 12.2506 51 1 3.1870 -10.1994 13.9387 52 1 3.0337 -7.5391 15.0913 53 1 1.0983 -8.8672 12.7754 54 1 5.0962 -4.8692 3.8174 55 1 4.2671 -3.7166 1.8071 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11757974_6201210.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:52:17 Heat of formation + Delta-G solvation = -86.572982 kcal Electronic energy + Delta-G solvation = -33603.971887 eV Core-core repulsion = 28969.102413 eV Total energy + Delta-G solvation = -4634.869474 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 465.093 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.94094 -41.26576 -39.88072 -39.06699 -37.23814 -36.41754 -34.06275 -33.62623 -31.97670 -31.88642 -30.82107 -30.24051 -29.41492 -28.51383 -28.27919 -28.25955 -26.35646 -24.70945 -23.95886 -23.83425 -22.48734 -21.99775 -21.38460 -19.67492 -19.14508 -18.27693 -18.05222 -17.63358 -17.22235 -16.71046 -16.47538 -16.31496 -16.12214 -15.81030 -15.56647 -15.48153 -15.07373 -14.84252 -14.74558 -14.59864 -14.40391 -14.25844 -14.05863 -13.96245 -13.89417 -13.80274 -13.73744 -13.69683 -13.65740 -13.21394 -13.07998 -12.96087 -12.91906 -12.59389 -12.37984 -12.26692 -12.24129 -12.23180 -12.04845 -11.90185 -11.69029 -11.66825 -11.36538 -11.23450 -11.04487 -10.68464 -10.64335 -10.41222 -10.37150 -9.99130 -9.88481 -9.35004 -8.98613 -0.09522 0.09448 0.23389 0.44939 0.61744 1.20824 1.28756 1.38593 1.50294 1.54376 1.96807 1.99978 2.05575 2.07577 2.36748 2.40418 2.76901 2.84969 3.33198 3.48292 3.62323 3.72145 3.75790 3.91950 3.95614 3.99762 4.02903 4.07638 4.13790 4.31475 4.33677 4.47823 4.55073 4.60130 4.61834 4.63864 4.64687 4.82285 4.82584 4.83755 4.87325 4.87883 4.90313 4.91920 4.95417 4.98623 5.06864 5.17532 5.19794 5.31410 5.34112 5.45084 5.49383 5.53768 5.63271 5.67662 5.70542 5.77251 5.99232 6.08128 6.30349 6.72507 6.96675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.469 4.469 2 Si 1.078 2.922 3 C -0.468 4.468 4 C -0.463 4.463 5 C -0.411 4.411 6 C -0.075 4.075 7 C -0.092 4.092 8 C -0.116 4.116 9 C -0.139 4.139 10 C 0.124 3.876 11 N -0.653 5.653 12 C 0.510 3.490 13 O -0.545 6.545 14 C 0.037 3.963 15 O -0.305 6.305 16 C 0.148 3.852 17 C -0.189 4.189 18 C -0.068 4.068 19 C -0.150 4.150 20 C -0.081 4.081 21 O -0.555 6.555 22 Si 0.984 3.016 23 H -0.243 1.243 24 H -0.280 1.280 25 H -0.247 1.247 26 C -0.031 4.031 27 C -0.143 4.143 28 Br -0.053 7.053 29 C -0.137 4.137 30 C -0.107 4.107 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.126 0.874 45 H 0.111 0.889 46 H 0.432 0.568 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.178 0.822 50 H 0.153 0.847 51 H 0.123 0.877 52 H 0.389 0.611 53 H 0.142 0.858 54 H 0.154 0.846 55 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.343 1.522 -0.955 10.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.270 2.730 3 C -0.574 4.574 4 C -0.569 4.569 5 C -0.495 4.495 6 C -0.112 4.112 7 C -0.093 4.093 8 C -0.135 4.135 9 C -0.160 4.160 10 C 0.030 3.970 11 N -0.302 5.302 12 C 0.297 3.703 13 O -0.421 6.421 14 C -0.041 4.041 15 O -0.217 6.217 16 C 0.100 3.900 17 C -0.208 4.208 18 C -0.086 4.086 19 C -0.152 4.152 20 C -0.190 4.190 21 O -0.362 6.362 22 Si 0.807 3.193 23 H -0.166 1.166 24 H -0.205 1.205 25 H -0.171 1.171 26 C -0.051 4.051 27 C -0.223 4.223 28 Br 0.032 6.968 29 C -0.157 4.157 30 C -0.125 4.125 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.144 0.856 45 H 0.129 0.871 46 H 0.272 0.728 47 H 0.154 0.846 48 H 0.153 0.847 49 H 0.195 0.805 50 H 0.170 0.830 51 H 0.141 0.859 52 H 0.239 0.761 53 H 0.160 0.840 54 H 0.171 0.829 55 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.265 1.005 -1.161 9.392 hybrid contribution 0.008 0.480 0.225 0.530 sum 9.273 1.485 -0.935 9.438 Atomic orbital electron populations 1.26394 1.22727 1.04327 1.04050 0.78157 0.64914 0.64841 0.65099 1.26353 1.06411 1.20542 1.04110 1.26296 1.06471 1.08385 1.15768 1.26327 1.06213 1.00922 1.16036 1.20345 1.01109 0.95040 0.94733 1.20240 0.95063 0.98034 0.95977 1.21085 1.00339 0.99483 0.92564 1.21119 0.96973 0.98341 0.99539 1.17774 0.95778 0.95942 0.87512 1.43123 1.11444 1.53834 1.21766 1.20727 0.86161 0.77846 0.85518 1.90811 1.18581 1.57012 1.75690 1.22795 0.88892 1.01905 0.90466 1.86235 1.35028 1.70705 1.29767 1.18769 0.93358 0.92754 0.85130 1.21525 0.94443 1.05692 0.99181 1.21264 0.99643 0.94141 0.93513 1.20400 0.92917 1.03049 0.98835 1.25109 1.10474 0.99361 0.84097 1.86505 1.68256 1.28509 1.52924 0.85214 0.72772 0.81532 0.79805 1.16615 1.20531 1.17114 1.20905 0.97887 0.94572 0.91713 1.21308 0.90696 1.10876 0.99373 1.96770 1.13152 1.97999 1.88867 1.21171 1.01735 1.02104 0.90667 1.21200 0.95708 0.96828 0.98778 0.91671 0.91628 0.91231 0.91225 0.91555 0.91630 0.91000 0.91658 0.91052 0.91157 0.90196 0.89446 0.90663 0.85609 0.87142 0.72772 0.84579 0.84659 0.80462 0.82959 0.85940 0.76145 0.83981 0.82866 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.16 8.65 113.37 0.98 2.15 16 2 Si 1.08 -6.29 12.19 68.60 0.84 -5.46 16 3 C -0.47 1.31 8.65 113.37 0.98 2.29 16 4 C -0.46 1.94 8.65 113.37 0.98 2.92 16 5 C -0.41 1.55 4.43 71.98 0.32 1.86 16 6 C -0.08 0.16 4.71 29.85 0.14 0.30 16 7 C -0.09 -0.20 5.14 -19.84 -0.10 -0.30 16 8 C -0.12 -0.65 9.69 22.25 0.22 -0.44 16 9 C -0.14 -1.10 8.66 22.39 0.19 -0.91 16 10 C 0.12 0.37 6.28 38.15 0.24 0.61 16 11 N -0.65 1.83 5.34 -303.51 -1.62 0.21 16 12 C 0.51 1.25 7.65 87.66 0.67 1.92 16 13 O -0.55 -7.75 14.18 15.98 0.23 -7.53 16 14 C 0.04 -0.19 5.22 71.24 0.37 0.18 16 15 O -0.30 -1.35 9.01 -73.53 -0.66 -2.01 16 16 C 0.15 0.32 6.68 22.52 0.15 0.47 16 17 C -0.19 0.95 9.04 22.36 0.20 1.16 16 18 C -0.07 0.33 8.66 22.26 0.19 0.53 16 19 C -0.15 0.28 5.39 -19.85 -0.11 0.18 16 20 C -0.08 0.29 2.82 71.24 0.20 0.49 16 21 O -0.55 0.69 12.77 -148.98 -1.90 -1.21 16 22 Si 0.98 -5.16 25.07 68.60 1.72 -3.44 16 23 H -0.24 1.56 7.11 99.48 0.71 2.27 16 24 H -0.28 0.10 7.11 99.48 0.71 0.81 16 25 H -0.25 1.37 7.11 99.48 0.71 2.08 16 26 C -0.03 -0.07 9.35 22.27 0.21 0.14 16 27 C -0.14 -0.77 6.24 22.40 0.14 -0.63 16 28 Br -0.05 -0.50 33.16 -20.37 -0.68 -1.17 16 29 C -0.14 0.11 9.96 22.39 0.22 0.34 16 30 C -0.11 0.02 9.69 22.25 0.22 0.24 16 31 H 0.06 -0.11 7.96 -2.39 -0.02 -0.13 16 32 H 0.06 -0.13 7.96 -2.39 -0.02 -0.15 16 33 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 34 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 35 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 36 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16 37 H 0.07 -0.32 7.79 -2.39 -0.02 -0.33 16 38 H 0.06 -0.21 7.96 -2.39 -0.02 -0.23 16 39 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 40 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 41 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 42 H 0.09 -0.42 7.73 -2.39 -0.02 -0.44 16 43 H 0.07 -0.18 7.73 -2.39 -0.02 -0.20 16 44 H 0.13 0.50 8.06 -2.91 -0.02 0.47 16 45 H 0.11 1.31 6.42 -2.91 -0.02 1.29 16 46 H 0.43 -5.24 8.82 -92.71 -0.82 -6.06 16 47 H 0.14 -1.74 7.65 -2.39 -0.02 -1.75 16 48 H 0.14 -1.68 7.67 -2.38 -0.02 -1.70 16 49 H 0.18 -2.37 6.30 -2.91 -0.02 -2.39 16 50 H 0.15 -1.46 4.87 -2.91 -0.01 -1.47 16 51 H 0.12 -0.55 7.96 -2.39 -0.02 -0.57 16 52 H 0.39 -3.03 8.70 -74.06 -0.64 -3.67 16 53 H 0.14 0.30 8.06 -2.91 -0.02 0.28 16 54 H 0.15 -1.09 8.06 -2.91 -0.02 -1.11 16 55 H 0.15 -0.74 8.06 -2.91 -0.02 -0.76 16 Total: 0.00 -27.05 471.94 4.55 -22.50 By element: Atomic # 1 Polarization: -15.59 SS G_CDS: 0.21 Total: -15.37 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.42 Total: 13.49 kcal Atomic # 7 Polarization: 1.83 SS G_CDS: -1.62 Total: 0.21 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -2.34 Total: -10.75 kcal Atomic # 14 Polarization: -11.45 SS G_CDS: 2.56 Total: -8.90 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -0.68 Total: -1.17 kcal Total: -27.05 4.55 -22.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11757974_6201210.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.074 kcal (2) G-P(sol) polarization free energy of solvation -27.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds