Wall clock time and date at job start Tue Mar 9 2021 14:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86301 * 109.47418 * 2 1 4 4 C 1.86302 * 109.47243 * 239.99803 * 2 1 3 5 5 C 1.90004 * 109.47093 * 120.00013 * 2 1 3 6 6 C 3.07400 * 109.47178 * 120.00119 * 2 1 3 7 7 C 4.54598 * 109.47100 * 120.00032 * 2 1 3 8 8 C 1.53005 * 109.47003 * 227.62502 * 7 6 5 9 9 N 1.46501 * 109.46985 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00005 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99778 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00211 * 180.02562 * 10 9 8 13 13 O 1.42900 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.35914 * 116.99871 * 180.02562 * 13 12 10 15 15 C 1.38678 * 120.06015 * 359.97438 * 14 13 12 16 16 C 1.38181 * 119.95680 * 179.97438 * 15 14 13 17 17 C 1.38241 * 120.07059 * 0.03195 * 16 15 14 18 18 C 1.50706 * 119.93825 * 179.97438 * 17 16 15 19 19 O 1.42895 * 109.46938 * 299.99525 * 18 17 16 20 20 Si 1.86299 * 109.46748 * 179.97438 * 18 17 16 21 21 H 1.48505 * 109.47505 * 299.99883 * 20 18 17 22 22 H 1.48503 * 109.47188 * 60.00070 * 20 18 17 23 23 H 1.48506 * 109.47139 * 179.97438 * 20 18 17 24 24 C 1.38279 * 120.12009 * 0.24319 * 17 16 15 25 25 C 1.38197 * 120.04539 * 359.46139 * 24 17 16 26 26 Br 1.89099 * 120.04178 * 180.25362 * 25 24 17 27 27 H 1.08998 * 109.47276 * 299.99807 * 1 2 3 28 28 H 1.08998 * 109.47373 * 59.99903 * 1 2 3 29 29 H 1.08999 * 109.47438 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47388 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46927 * 300.00370 * 3 2 1 32 32 H 1.08998 * 109.46739 * 59.99864 * 3 2 1 33 33 H 1.08999 * 109.47144 * 300.00474 * 4 2 1 34 34 H 1.09009 * 109.46926 * 60.00283 * 4 2 1 35 35 H 1.08998 * 109.47398 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47359 * 107.62524 * 7 6 5 37 37 H 1.08998 * 109.47416 * 347.62822 * 7 6 5 38 38 H 1.08994 * 109.46953 * 60.00486 * 8 7 6 39 39 H 1.09001 * 109.46746 * 299.99889 * 8 7 6 40 40 H 0.97000 * 120.00017 * 0.02562 * 9 8 7 41 41 H 1.08994 * 109.46996 * 60.00301 * 12 10 9 42 42 H 1.09001 * 109.46965 * 299.99543 * 12 10 9 43 43 H 1.07999 * 120.02210 * 359.96235 * 15 14 13 44 44 H 1.07999 * 119.96701 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.47161 * 59.99791 * 18 17 16 46 46 H 0.96709 * 113.99981 * 180.02562 * 19 18 17 47 47 H 1.07998 * 119.98018 * 179.72434 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4963 -0.8957 1.5514 6 6 2.8876 -1.4491 2.5099 7 6 3.3783 -2.1430 3.7118 8 6 3.8397 -1.1116 4.7434 9 7 4.3286 -1.8022 5.9394 10 6 4.7896 -1.0909 6.9872 11 8 4.7993 0.1210 6.9401 12 6 5.2931 -1.8013 8.2172 13 8 5.7239 -0.8379 9.1808 14 6 6.2105 -1.3161 10.3563 15 6 6.2714 -2.6837 10.5780 16 6 6.7669 -3.1675 11.7737 17 6 7.2013 -2.2897 12.7493 18 6 7.7407 -2.8206 14.0526 19 8 6.7316 -3.5928 14.7064 20 14 8.2385 -1.3959 15.1449 21 1 9.2873 -0.5938 14.4652 22 1 7.0551 -0.5392 15.4112 23 1 8.7694 -1.9190 16.4294 24 6 7.1367 -0.9253 12.5338 25 6 6.6477 -0.4362 11.3373 26 35 6.5660 1.4294 11.0399 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5741 1.7564 0.0005 31 1 2.1207 2.2703 -0.8899 32 1 2.1207 2.2702 0.8900 33 1 2.1206 -1.9059 -1.5211 34 1 2.1207 -0.3644 -2.4112 35 1 3.5740 -0.8779 -1.5214 36 1 4.2151 -2.7876 3.4430 37 1 2.5760 -2.7470 4.1356 38 1 3.0029 -0.4671 5.0122 39 1 4.6421 -0.5077 4.3195 40 1 4.3211 -2.7715 5.9769 41 1 6.1299 -2.4455 7.9478 42 1 4.4912 -2.4054 8.6416 43 1 5.9316 -3.3702 9.8166 44 1 6.8148 -4.2325 11.9464 45 1 8.6095 -3.4491 13.8571 46 1 7.0096 -3.9663 15.5540 47 1 7.4725 -0.2415 13.2993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11968232_6201210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:32 Heat of formation + Delta-G solvation = -72.543950 kcal Electronic energy + Delta-G solvation = -26298.898769 eV Core-core repulsion = 22232.165158 eV Total energy + Delta-G solvation = -4066.733611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 413.062 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69989 -40.69751 -39.09324 -37.31906 -36.95859 -34.43838 -33.55028 -32.28422 -31.24473 -30.33508 -29.48280 -29.06250 -28.30497 -28.28855 -26.34648 -24.75667 -23.79747 -22.30333 -21.82587 -19.59364 -18.82846 -18.41068 -17.97791 -17.62449 -17.14452 -17.01817 -16.64551 -16.52329 -16.25150 -15.55356 -15.28984 -15.11502 -14.64526 -14.56072 -14.48955 -14.12500 -14.05303 -13.94202 -13.91318 -13.88547 -13.76835 -13.53377 -13.23184 -13.17540 -13.10612 -13.00117 -12.52462 -12.32103 -12.21373 -12.09244 -12.02016 -11.88235 -11.76295 -11.52170 -11.38067 -11.26925 -11.11423 -10.59022 -10.54900 -10.33960 -10.32028 -10.02167 -9.31257 -0.05519 0.06209 0.58019 1.14541 1.23409 1.38643 1.40412 1.45798 1.48320 1.52366 1.78103 1.89609 2.35410 2.37628 2.45462 2.49424 2.55242 3.35155 3.44300 3.66901 3.80107 3.84375 3.92024 3.98294 4.03090 4.06093 4.07829 4.08660 4.31906 4.40408 4.45995 4.65997 4.78194 4.80418 4.82101 4.82651 4.83895 4.85685 4.87491 4.88321 4.91136 5.03244 5.18559 5.29982 5.45097 5.56521 5.65596 5.67277 6.03207 6.37187 6.71659 6.83880 7.06406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.195 2.805 3 C -0.467 4.467 4 C -0.459 4.459 5 C -0.430 4.430 6 C -0.215 4.215 7 C -0.023 4.023 8 C 0.130 3.870 9 N -0.708 5.708 10 C 0.511 3.489 11 O -0.571 6.571 12 C 0.035 3.965 13 O -0.306 6.306 14 C 0.148 3.852 15 C -0.193 4.193 16 C -0.028 4.028 17 C -0.116 4.116 18 C -0.061 4.061 19 O -0.558 6.558 20 Si 0.945 3.055 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.245 1.245 24 C -0.071 4.071 25 C -0.141 4.141 26 Br -0.053 7.053 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.425 0.575 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.179 0.821 44 H 0.165 0.835 45 H 0.110 0.890 46 H 0.401 0.599 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 -10.477 -1.923 10.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.377 2.623 3 C -0.574 4.574 4 C -0.567 4.567 5 C -0.463 4.463 6 C -0.216 4.216 7 C -0.060 4.060 8 C 0.006 3.994 9 N -0.363 5.363 10 C 0.297 3.703 11 O -0.449 6.449 12 C -0.042 4.042 13 O -0.219 6.219 14 C 0.100 3.900 15 C -0.212 4.212 16 C -0.047 4.047 17 C -0.117 4.117 18 C -0.173 4.173 19 O -0.368 6.368 20 Si 0.771 3.229 21 H -0.186 1.186 22 H -0.202 1.202 23 H -0.169 1.169 24 C -0.091 4.091 25 C -0.221 4.221 26 Br 0.032 6.968 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.264 0.736 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.196 0.804 44 H 0.183 0.817 45 H 0.128 0.872 46 H 0.251 0.749 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.291 -7.905 -2.002 8.160 hybrid contribution 0.272 -0.838 0.667 1.105 sum 0.563 -8.743 -1.336 8.862 Atomic orbital electron populations 1.26219 1.20638 1.04908 1.05121 0.76231 0.64909 0.63120 0.58024 1.26293 1.06474 1.19546 1.05046 1.26188 1.06515 1.08538 1.15417 1.37126 1.01724 1.01200 1.06216 1.24197 0.99898 1.00076 0.97423 1.18953 1.02731 0.96180 0.88100 1.21121 0.98851 0.95066 0.84343 1.45556 1.64335 1.11506 1.14923 1.20585 0.77416 0.87461 0.84847 1.90799 1.55579 1.16335 1.82152 1.22840 1.03786 0.90946 0.86671 1.86234 1.76462 1.35583 1.23583 1.18770 0.93491 0.92652 0.85062 1.21669 1.06133 0.92165 1.01188 1.21266 0.91524 1.01484 0.90380 1.19437 1.03579 0.91736 0.96945 1.24395 0.94629 1.03519 0.94717 1.86443 1.39756 1.70596 1.39983 0.85763 0.79283 0.78216 0.79599 1.18579 1.20159 1.16907 1.20877 0.97381 0.96075 0.94771 1.21070 1.12814 0.90518 0.97716 1.96747 1.97914 1.05227 1.96896 0.91478 0.89523 0.91010 0.91439 0.89486 0.91651 0.90987 0.89523 0.91263 0.86941 0.86983 0.92559 0.92523 0.73587 0.84728 0.84948 0.80382 0.81720 0.87224 0.74869 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.72 8.65 113.37 0.98 2.70 16 2 Si 1.20 -5.49 14.26 68.60 0.98 -4.51 16 3 C -0.47 1.11 8.65 113.37 0.98 2.09 16 4 C -0.46 1.97 8.65 113.37 0.98 2.95 16 5 C -0.43 -1.38 12.14 74.32 0.90 -0.47 16 6 C -0.22 -0.85 13.34 31.13 0.42 -0.44 16 7 C -0.02 0.08 5.82 28.79 0.17 0.24 16 8 C 0.13 0.08 5.63 86.38 0.49 0.57 16 9 N -0.71 2.77 5.56 -463.05 -2.57 0.20 16 10 C 0.51 1.68 7.91 87.66 0.69 2.38 16 11 O -0.57 -9.23 16.50 15.99 0.26 -8.97 16 12 C 0.03 -0.13 5.22 71.24 0.37 0.24 16 13 O -0.31 -1.96 9.01 -73.54 -0.66 -2.62 16 14 C 0.15 0.65 6.68 22.52 0.15 0.80 16 15 C -0.19 0.62 9.04 22.36 0.20 0.82 16 16 C -0.03 0.08 9.60 22.26 0.21 0.30 16 17 C -0.12 -0.10 5.42 -19.85 -0.11 -0.21 16 18 C -0.06 0.22 2.81 71.24 0.20 0.42 16 19 O -0.56 1.93 12.74 -148.98 -1.90 0.03 16 20 Si 0.95 -0.55 25.07 68.60 1.72 1.17 16 21 H -0.26 -0.45 7.11 99.48 0.71 0.25 16 22 H -0.28 -1.28 7.11 99.48 0.71 -0.58 16 23 H -0.25 0.44 7.11 99.48 0.71 1.15 16 24 C -0.07 -0.38 8.40 22.27 0.19 -0.19 16 25 C -0.14 -1.14 6.24 22.40 0.14 -1.00 16 26 Br -0.05 -0.61 33.16 -20.37 -0.68 -1.28 16 27 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 28 H 0.09 -0.48 7.96 -2.39 -0.02 -0.50 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 31 H 0.09 -0.39 7.96 -2.39 -0.02 -0.41 16 32 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 33 H 0.07 -0.29 7.96 -2.39 -0.02 -0.30 16 34 H 0.09 -0.52 7.96 -2.38 -0.02 -0.54 16 35 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 36 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 38 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.43 -5.58 8.47 -92.71 -0.79 -6.37 16 41 H 0.14 -1.53 7.66 -2.39 -0.02 -1.55 16 42 H 0.13 -1.45 7.66 -2.39 -0.02 -1.46 16 43 H 0.18 -2.09 6.30 -2.91 -0.02 -2.11 16 44 H 0.17 -1.34 8.06 -2.91 -0.02 -1.37 16 45 H 0.11 -1.00 7.96 -2.39 -0.02 -1.02 16 46 H 0.40 -4.85 8.74 -74.05 -0.65 -5.50 16 47 H 0.13 0.65 4.87 -2.91 -0.01 0.64 16 Total: 0.00 -30.95 425.79 4.45 -26.51 By element: Atomic # 1 Polarization: -22.04 SS G_CDS: 0.33 Total: -21.71 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.96 Total: 11.20 kcal Atomic # 7 Polarization: 2.77 SS G_CDS: -2.57 Total: 0.20 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -2.30 Total: -11.57 kcal Atomic # 14 Polarization: -6.04 SS G_CDS: 2.70 Total: -3.34 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -0.68 Total: -1.28 kcal Total: -30.95 4.45 -26.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11968232_6201210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.037 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds