Wall clock time and date at job start Tue Mar 9 2021 14:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86300 * 109.47262 * 2 1 4 4 C 1.86306 * 109.47119 * 239.99605 * 2 1 3 5 5 C 1.90002 * 109.46899 * 119.99764 * 2 1 3 6 6 C 3.07406 * 109.46967 * 119.99784 * 2 1 3 7 7 C 4.54600 * 109.46930 * 119.99817 * 2 1 3 8 8 C 1.53002 * 109.47033 * 163.67789 * 7 6 5 9 9 N 1.46500 * 109.47119 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00253 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99517 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00401 * 180.02562 * 10 9 8 13 13 N 1.46497 * 109.47264 * 180.02562 * 12 10 9 14 14 C 1.36838 * 125.05962 * 264.97485 * 13 12 10 15 15 C 1.34235 * 109.93800 * 180.02562 * 14 13 12 16 16 C 1.50692 * 126.50345 * 180.02562 * 15 14 13 17 17 O 1.42898 * 109.47457 * 104.96913 * 16 15 14 18 18 Si 1.86305 * 109.47067 * 344.97200 * 16 15 14 19 19 H 1.48501 * 109.47060 * 60.00119 * 18 16 15 20 20 H 1.48503 * 109.47195 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47092 * 299.99928 * 18 16 15 22 22 C 1.46498 * 106.99657 * 359.77818 * 15 14 13 23 23 C 1.39590 * 134.02707 * 179.57964 * 22 15 14 24 24 C 1.36668 * 119.76122 * 180.37212 * 23 22 15 25 25 C 1.38785 * 120.52395 * 0.26101 * 24 23 22 26 26 C 1.37786 * 120.67117 * 359.97001 * 25 24 23 27 27 C 1.37687 * 125.06449 * 85.00068 * 13 12 10 28 28 H 1.09002 * 109.47367 * 300.00320 * 1 2 3 29 29 H 1.09008 * 109.47149 * 59.99885 * 1 2 3 30 30 H 1.09000 * 109.47570 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46742 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46705 * 299.99503 * 3 2 1 33 33 H 1.08996 * 109.47318 * 60.00014 * 3 2 1 34 34 H 1.08996 * 109.46877 * 300.00301 * 4 2 1 35 35 H 1.08995 * 109.46944 * 60.00428 * 4 2 1 36 36 H 1.08997 * 109.46914 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.47373 * 43.68148 * 7 6 5 38 38 H 1.08996 * 109.47263 * 283.67663 * 7 6 5 39 39 H 1.08991 * 109.47332 * 60.00179 * 8 7 6 40 40 H 1.08996 * 109.46993 * 300.00040 * 8 7 6 41 41 H 0.96997 * 120.00212 * 0.02562 * 9 8 7 42 42 H 1.09005 * 109.47029 * 59.99929 * 12 10 9 43 43 H 1.09002 * 109.46874 * 300.00441 * 12 10 9 44 44 H 1.07997 * 125.03385 * 0.04175 * 14 13 12 45 45 H 1.08998 * 109.47154 * 224.97146 * 16 15 14 46 46 H 0.96700 * 114.00375 * 300.00408 * 17 16 15 47 47 H 1.08002 * 120.12275 * 0.65785 * 23 22 15 48 48 H 1.07995 * 119.73473 * 180.27672 * 24 23 22 49 49 H 1.08005 * 119.66135 * 179.97438 * 25 24 23 50 50 H 1.08002 * 120.10859 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8784 -1.5211 5 6 2.4962 -0.8956 1.5514 6 6 2.8876 -1.4490 2.5100 7 6 3.3781 -2.1429 3.7119 8 6 4.8696 -1.8544 3.8943 9 7 5.3578 -2.5445 5.0908 10 6 6.6517 -2.4345 5.4515 11 8 7.4118 -1.7639 4.7856 12 6 7.1540 -3.1448 6.6820 13 7 8.5820 -2.8685 6.8566 14 6 9.5979 -3.6707 6.4130 15 6 10.7830 -3.1294 6.7360 16 6 12.1432 -3.7003 6.4278 17 8 12.7369 -2.9645 5.3563 18 14 11.9686 -5.4876 5.9319 19 1 11.1062 -5.5850 4.7269 20 1 13.3089 -6.0500 5.6275 21 1 11.3516 -6.2523 7.0453 22 6 10.5034 -1.8753 7.4398 23 6 11.3033 -0.8878 8.0174 24 6 10.7198 0.1895 8.6230 25 6 9.3379 0.3071 8.6730 26 6 8.5296 -0.6583 8.1135 27 6 9.1019 -1.7631 7.4920 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.5740 1.7563 -0.0005 32 1 2.1207 2.2702 -0.8901 33 1 2.1207 2.2703 0.8899 34 1 2.1206 -1.9060 -1.5210 35 1 2.1207 -0.3645 -2.4111 36 1 3.5739 -0.8787 -1.5209 37 1 3.2270 -3.2165 3.5989 38 1 2.8302 -1.7888 4.5850 39 1 5.0209 -0.7810 4.0074 40 1 5.4176 -2.2085 3.0212 41 1 4.7499 -3.0812 5.6231 42 1 7.0024 -4.2184 6.5691 43 1 6.6062 -2.7904 7.5551 44 1 9.4658 -4.6015 5.8815 45 1 12.7762 -3.6287 7.3122 46 1 12.2265 -2.9843 4.5352 47 1 12.3794 -0.9725 7.9819 48 1 11.3391 0.9555 9.0658 49 1 8.8916 1.1642 9.1555 50 1 7.4552 -0.5574 8.1574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11968232_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:29:07 Heat of formation + Delta-G solvation = -4.134810 kcal Electronic energy + Delta-G solvation = -27965.362817 eV Core-core repulsion = 24082.680033 eV Total energy + Delta-G solvation = -3882.682784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 358.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.56051 -40.74341 -38.12752 -37.69099 -36.99351 -34.51793 -34.00622 -31.65891 -30.61976 -30.25322 -29.47418 -28.73538 -28.31750 -28.30148 -25.94880 -24.50137 -23.67981 -22.68729 -21.82104 -20.70144 -18.92149 -18.60209 -17.94394 -17.76803 -17.37726 -16.86947 -16.70927 -16.43418 -16.09270 -15.75807 -15.50927 -15.44464 -14.86737 -14.73652 -14.60089 -14.50812 -14.38002 -14.13632 -13.93282 -13.91040 -13.72539 -13.56065 -13.43500 -13.20275 -13.17460 -13.02732 -13.01499 -12.72142 -12.58472 -12.34405 -12.15805 -12.03791 -11.91370 -11.69142 -11.54733 -11.39998 -11.25879 -10.61637 -10.57044 -10.55891 -10.33606 -10.28359 -9.18008 -8.65081 0.12430 0.62282 1.21520 1.28624 1.36957 1.44819 1.46001 1.48706 1.57959 1.67259 1.75767 1.94619 2.13303 2.43269 2.45469 2.49374 2.94364 3.51933 3.62921 3.64051 3.71646 3.80720 3.89629 3.97495 4.03187 4.06226 4.10944 4.21351 4.29123 4.43036 4.50694 4.59233 4.70921 4.77728 4.78828 4.79927 4.80648 4.81219 4.84076 4.86264 4.86877 4.89604 4.89862 5.13251 5.18249 5.49833 5.55265 5.64212 5.65550 5.66038 5.72608 5.74045 6.14462 6.21115 6.38754 6.69665 6.74660 7.04433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.198 2.802 3 C -0.466 4.466 4 C -0.463 4.463 5 C -0.429 4.429 6 C -0.217 4.217 7 C -0.023 4.023 8 C 0.131 3.869 9 N -0.710 5.710 10 C 0.490 3.510 11 O -0.573 6.573 12 C 0.089 3.911 13 N -0.468 5.468 14 C 0.062 3.938 15 C -0.217 4.217 16 C -0.053 4.053 17 O -0.560 6.560 18 Si 0.993 3.007 19 H -0.248 1.248 20 H -0.273 1.273 21 H -0.249 1.249 22 C -0.114 4.114 23 C -0.085 4.085 24 C -0.154 4.154 25 C -0.107 4.107 26 C -0.137 4.137 27 C 0.089 3.911 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.424 0.576 42 H 0.164 0.836 43 H 0.147 0.853 44 H 0.192 0.808 45 H 0.110 0.890 46 H 0.384 0.616 47 H 0.123 0.877 48 H 0.138 0.862 49 H 0.145 0.855 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 -3.907 0.746 9.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.380 2.620 3 C -0.573 4.573 4 C -0.571 4.571 5 C -0.461 4.461 6 C -0.218 4.218 7 C -0.060 4.060 8 C 0.007 3.993 9 N -0.365 5.365 10 C 0.275 3.725 11 O -0.451 6.451 12 C -0.035 4.035 13 N -0.151 5.151 14 C -0.064 4.064 15 C -0.224 4.224 16 C -0.163 4.163 17 O -0.367 6.367 18 Si 0.815 3.185 19 H -0.171 1.171 20 H -0.198 1.198 21 H -0.172 1.172 22 C -0.119 4.119 23 C -0.104 4.104 24 C -0.173 4.173 25 C -0.126 4.126 26 C -0.157 4.157 27 C -0.016 4.016 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.263 0.737 42 H 0.182 0.818 43 H 0.165 0.835 44 H 0.209 0.791 45 H 0.128 0.872 46 H 0.232 0.768 47 H 0.141 0.859 48 H 0.156 0.844 49 H 0.163 0.837 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.564 -4.334 0.555 8.735 hybrid contribution -0.324 0.351 0.103 0.489 sum -7.888 -3.983 0.658 8.860 Atomic orbital electron populations 1.26189 1.20294 1.04922 1.05253 0.76176 0.65027 0.63047 0.57717 1.26284 1.06314 1.19503 1.05193 1.26248 1.06348 1.08608 1.15864 1.37144 1.00649 1.02251 1.06088 1.24210 1.00466 0.99604 0.97494 1.18949 0.93118 1.01057 0.92852 1.21070 0.93784 0.96854 0.87595 1.45732 1.09990 1.52120 1.28641 1.21546 0.82348 0.81380 0.87207 1.90810 1.56905 1.41868 1.55507 1.21978 0.79314 1.04862 0.97366 1.43420 1.05519 1.18209 1.47936 1.21997 0.86111 0.97680 1.00564 1.20858 0.95404 0.97223 1.08956 1.24539 0.91274 1.07207 0.93255 1.86459 1.51031 1.76022 1.23151 0.85146 0.80037 0.72634 0.80705 1.17116 1.19800 1.17191 1.19333 0.92427 0.96918 1.03186 1.20488 0.99680 0.93260 0.96927 1.20936 0.95432 0.98837 1.02056 1.21139 0.93561 0.98719 0.99148 1.20243 1.00268 0.93191 1.01988 1.18431 0.92794 0.90726 0.99630 0.91177 0.89536 0.91062 0.91698 0.89510 0.91290 0.91105 0.89525 0.91603 0.87029 0.87170 0.92939 0.92670 0.73728 0.81807 0.83528 0.79082 0.87200 0.76796 0.85853 0.84414 0.83701 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.20 8.65 113.37 0.98 3.18 16 2 Si 1.20 -6.12 14.26 68.60 0.98 -5.14 16 3 C -0.47 1.45 8.65 113.37 0.98 2.43 16 4 C -0.46 1.74 8.65 113.37 0.98 2.72 16 5 C -0.43 -1.15 12.15 74.32 0.90 -0.24 16 6 C -0.22 -0.76 13.34 31.12 0.42 -0.34 16 7 C -0.02 0.09 5.82 28.79 0.17 0.25 16 8 C 0.13 -0.04 5.63 86.38 0.49 0.45 16 9 N -0.71 3.84 5.56 -463.07 -2.57 1.27 16 10 C 0.49 0.32 7.90 87.66 0.69 1.01 16 11 O -0.57 -7.46 16.42 -3.04 -0.05 -7.51 16 12 C 0.09 -0.54 6.48 85.63 0.55 0.02 16 13 N -0.47 -1.47 2.27 -520.01 -1.18 -2.65 16 14 C 0.06 0.18 9.89 83.00 0.82 1.00 16 15 C -0.22 -1.44 5.57 -18.63 -0.10 -1.54 16 16 C -0.05 -0.21 3.06 71.23 0.22 0.01 16 17 O -0.56 -3.77 12.88 -148.98 -1.92 -5.69 16 18 Si 0.99 -0.26 26.08 68.60 1.79 1.53 16 19 H -0.25 0.38 7.03 99.48 0.70 1.08 16 20 H -0.27 -0.90 7.11 99.48 0.71 -0.19 16 21 H -0.25 0.17 7.11 99.48 0.71 0.87 16 22 C -0.11 -1.21 6.35 -20.20 -0.13 -1.34 16 23 C -0.08 -0.82 10.05 22.23 0.22 -0.60 16 24 C -0.15 -1.06 9.97 22.03 0.22 -0.84 16 25 C -0.11 -0.59 10.01 22.29 0.22 -0.36 16 26 C -0.14 -0.84 10.00 22.37 0.22 -0.62 16 27 C 0.09 0.74 6.80 39.03 0.27 1.01 16 28 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.09 -0.56 7.96 -2.38 -0.02 -0.58 16 30 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 31 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 32 H 0.09 -0.44 7.96 -2.38 -0.02 -0.46 16 33 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 34 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 35 H 0.09 -0.48 7.96 -2.39 -0.02 -0.50 16 36 H 0.06 -0.15 7.96 -2.39 -0.02 -0.16 16 37 H 0.11 -0.86 8.14 -2.38 -0.02 -0.88 16 38 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.42 -5.95 8.47 -92.71 -0.79 -6.74 16 42 H 0.16 -2.36 8.12 -2.38 -0.02 -2.38 16 43 H 0.15 -1.68 8.14 -2.39 -0.02 -1.70 16 44 H 0.19 -0.72 6.29 -2.91 -0.02 -0.74 16 45 H 0.11 0.37 7.96 -2.39 -0.02 0.35 16 46 H 0.38 0.45 8.70 -74.06 -0.64 -0.19 16 47 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 48 H 0.14 0.35 8.06 -2.91 -0.02 0.33 16 49 H 0.15 0.05 8.06 -2.91 -0.02 0.02 16 50 H 0.13 0.19 8.06 -2.91 -0.02 0.16 16 Total: 0.00 -29.77 431.85 5.44 -24.34 By element: Atomic # 1 Polarization: -12.62 SS G_CDS: 0.26 Total: -12.35 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 8.12 Total: 6.21 kcal Atomic # 7 Polarization: 2.37 SS G_CDS: -3.75 Total: -1.38 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.97 Total: -13.20 kcal Atomic # 14 Polarization: -6.38 SS G_CDS: 2.77 Total: -3.61 kcal Total: -29.77 5.44 -24.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11968232_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.202 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds