Wall clock time and date at job start Tue Mar 9 2021 12:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00203 * 2 1 4 4 O 1.20823 * 119.99955 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00012 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.46931 * 34.99874 * 5 3 2 7 7 C 1.34774 * 120.00338 * 300.00107 * 6 5 3 8 8 O 1.21574 * 119.99776 * 359.97438 * 7 6 5 9 9 C 1.47696 * 120.00100 * 180.02562 * 7 6 5 10 10 C 1.39808 * 120.15440 * 179.72592 * 9 7 6 11 11 F 1.35099 * 120.08378 * 359.97438 * 10 9 7 12 12 C 1.38315 * 119.82892 * 179.72197 * 10 9 7 13 13 C 1.38186 * 120.14416 * 0.57059 * 12 10 9 14 14 C 1.50695 * 119.83993 * 179.70155 * 13 12 10 15 15 O 1.42904 * 109.47174 * 254.98017 * 14 13 12 16 16 Si 1.86302 * 109.47403 * 14.97876 * 14 13 12 17 17 C 1.38654 * 120.31794 * 359.68233 * 13 12 10 18 18 F 1.35093 * 119.91838 * 180.02562 * 17 13 12 19 19 C 1.38068 * 120.16593 * 0.04124 * 17 13 12 20 20 C 1.53002 * 109.47389 * 275.00109 * 5 3 2 21 21 C 1.52993 * 109.47392 * 179.97438 * 20 5 3 22 22 C 1.52997 * 109.47024 * 60.00071 * 21 20 5 23 23 H 1.09001 * 109.47375 * 180.02562 * 22 21 20 24 24 C 1.53006 * 109.47164 * 60.00057 * 22 21 20 25 25 C 1.52997 * 109.47232 * 299.99958 * 22 21 20 26 26 C 1.52997 * 109.47265 * 155.00035 * 5 3 2 27 27 H 1.08994 * 109.47067 * 299.99879 * 1 2 3 28 28 H 1.09000 * 109.46947 * 59.99814 * 1 2 3 29 29 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 30 30 H 0.97004 * 119.99198 * 120.00261 * 6 5 3 31 31 H 1.07996 * 119.92727 * 180.30252 * 12 10 9 32 32 H 1.09002 * 109.47587 * 134.98096 * 14 13 12 33 33 H 0.96704 * 114.00070 * 180.02562 * 15 14 13 34 34 H 1.48495 * 110.00095 * 300.00100 * 16 14 13 35 35 H 1.48502 * 109.99518 * 61.31921 * 16 14 13 36 36 H 1.07998 * 120.07768 * 179.97438 * 19 17 13 37 37 H 1.09002 * 109.46838 * 300.00434 * 20 5 3 38 38 H 1.09004 * 109.47006 * 59.99931 * 20 5 3 39 39 H 1.09002 * 109.47722 * 300.00185 * 21 20 5 40 40 H 1.09000 * 109.47250 * 180.02562 * 21 20 5 41 41 H 1.09001 * 109.46998 * 299.99705 * 24 22 21 42 42 H 1.09000 * 109.47050 * 59.99996 * 24 22 21 43 43 H 1.09001 * 109.46801 * 180.02562 * 24 22 21 44 44 H 1.09004 * 109.47261 * 179.97438 * 25 22 21 45 45 H 1.09002 * 109.47153 * 299.99992 * 25 22 21 46 46 H 1.09002 * 109.47045 * 60.00159 * 26 5 3 47 47 H 1.09000 * 109.47140 * 300.00252 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 0.0006 6 7 4.1135 0.1702 -0.7912 7 6 3.8541 -1.1046 -0.4391 8 8 3.1664 -1.3380 0.5359 9 6 4.4061 -2.2181 -1.2370 10 6 4.1438 -3.5418 -0.8713 11 9 3.3844 -3.8067 0.2142 12 6 4.6594 -4.5794 -1.6268 13 6 5.4418 -4.3099 -2.7335 14 6 6.0056 -5.4457 -3.5477 15 8 7.4004 -5.5846 -3.2696 16 14 5.1237 -7.0256 -3.1041 17 6 5.7102 -2.9995 -3.0986 18 9 6.4756 -2.7453 -4.1824 19 6 5.1974 -1.9538 -2.3571 20 6 4.0817 1.1761 1.4378 21 6 5.6096 1.2555 1.4383 22 6 6.0513 2.5873 0.8285 23 1 7.1398 2.6438 0.8284 24 6 5.4803 3.7412 1.6553 25 6 5.5360 2.6860 -0.6087 26 6 4.0075 2.6068 -0.6091 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 4.6625 0.3565 -1.5689 31 1 4.4537 -5.6024 -1.3485 32 1 5.8657 -5.2370 -4.6084 33 1 7.8302 -6.2985 -3.7605 34 1 5.3069 -7.3214 -1.6605 35 1 3.6773 -6.9052 -3.4183 36 1 5.4076 -0.9336 -2.6426 37 1 3.6745 1.9979 2.0269 38 1 3.7674 0.2271 1.8722 39 1 6.0164 0.4335 0.8493 40 1 5.9767 1.1848 2.4622 41 1 4.3918 3.6847 1.6549 42 1 5.8475 3.6710 2.6792 43 1 5.7946 4.6900 1.2205 44 1 5.8503 3.6351 -1.0431 45 1 5.9427 1.8640 -1.1978 46 1 3.6005 3.4286 -0.0200 47 1 3.6404 2.6771 -1.6330 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_12360598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:18 Heat of formation + Delta-G solvation = -195.954269 kcal Electronic energy + Delta-G solvation = -36285.728742 eV Core-core repulsion = 31265.003002 eV Total energy + Delta-G solvation = -5020.725740 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.23101 -50.15811 -42.67421 -41.07740 -40.22401 -39.32889 -37.64967 -37.53853 -35.70466 -33.84091 -32.03437 -31.68027 -31.49656 -29.13594 -27.96275 -27.62518 -24.73531 -24.46944 -24.07462 -23.75433 -22.26330 -21.46789 -19.95781 -19.59890 -18.92353 -18.58978 -18.56171 -18.43489 -18.12515 -17.56406 -17.40835 -17.16613 -16.76394 -16.57234 -16.26259 -16.22125 -15.75241 -15.56442 -15.51489 -15.33549 -15.16118 -15.03727 -14.58232 -14.56480 -14.08167 -13.96104 -13.87221 -13.80437 -13.70201 -13.60029 -13.37387 -13.14087 -13.09839 -12.73733 -12.66717 -12.35947 -12.15692 -12.11040 -11.90065 -11.88326 -11.46643 -11.29925 -11.20996 -10.95695 -10.68835 -10.41902 -10.38257 -9.92754 -5.00604 -0.89714 -0.43661 0.84738 1.17150 1.30242 1.58508 1.63023 1.71658 1.89436 2.18998 2.65790 2.73067 2.96657 3.12972 3.25717 3.41176 3.47674 3.57440 3.60399 3.75299 3.94865 3.95209 4.02713 4.03943 4.11440 4.16657 4.21683 4.23200 4.26557 4.36115 4.38741 4.46887 4.53166 4.55434 4.56425 4.64443 4.75381 4.81211 4.84868 4.97782 5.02125 5.06137 5.10541 5.22079 5.24588 5.26882 5.32076 5.36683 5.52672 6.20223 6.51973 6.81900 6.94216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.336 6.336 3 C 0.451 3.549 4 O -0.530 6.530 5 C 0.205 3.795 6 N -0.699 5.699 7 C 0.560 3.440 8 O -0.510 6.510 9 C -0.141 4.141 10 C 0.140 3.860 11 F -0.123 7.123 12 C -0.148 4.148 13 C -0.063 4.063 14 C -0.085 4.085 15 O -0.557 6.557 16 Si 0.779 3.221 17 C 0.109 3.891 18 F -0.120 7.120 19 C -0.075 4.075 20 C -0.129 4.129 21 C -0.103 4.103 22 C -0.092 4.092 23 H 0.088 0.912 24 C -0.156 4.156 25 C -0.110 4.110 26 C -0.113 4.113 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.420 0.580 31 H 0.150 0.850 32 H 0.103 0.897 33 H 0.409 0.591 34 H -0.286 1.286 35 H -0.284 1.284 36 H 0.188 0.812 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.651 -1.925 -6.638 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.250 6.250 3 C 0.293 3.707 4 O -0.420 6.420 5 C 0.116 3.884 6 N -0.357 5.357 7 C 0.346 3.654 8 O -0.385 6.385 9 C -0.145 4.145 10 C 0.120 3.880 11 F -0.101 7.101 12 C -0.166 4.166 13 C -0.065 4.065 14 C -0.195 4.195 15 O -0.368 6.368 16 Si 0.683 3.317 17 C 0.089 3.911 18 F -0.098 7.098 19 C -0.094 4.094 20 C -0.167 4.167 21 C -0.141 4.141 22 C -0.110 4.110 23 H 0.106 0.894 24 C -0.213 4.213 25 C -0.147 4.147 26 C -0.151 4.151 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.133 0.867 30 H 0.260 0.740 31 H 0.167 0.833 32 H 0.121 0.879 33 H 0.262 0.738 34 H -0.214 1.214 35 H -0.211 1.211 36 H 0.205 0.795 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.173 -1.680 -5.070 6.778 hybrid contribution -0.578 0.537 0.074 0.793 sum 3.595 -1.142 -4.996 6.260 Atomic orbital electron populations 1.23443 0.76361 1.04774 1.02277 1.86876 1.23603 1.32138 1.82419 1.24713 0.92980 0.81552 0.71432 1.90665 1.67449 1.37174 1.46665 1.20265 0.83434 0.89523 0.95137 1.45731 1.54287 1.03509 1.32193 1.17881 0.80226 0.82875 0.84371 1.90881 1.36425 1.84069 1.27143 1.19792 1.03747 0.91967 0.98979 1.17708 0.92515 0.92659 0.85137 1.91599 1.72606 1.94476 1.51413 1.20926 1.00634 0.99446 0.95622 1.19734 0.96973 0.94477 0.95267 1.24809 0.88968 1.04192 1.01511 1.86440 1.19191 1.60209 1.70992 0.93913 0.77408 0.80340 0.80006 1.17251 0.94541 0.92449 0.86873 1.91573 1.72532 1.94619 1.51084 1.21434 0.94658 1.01243 0.92100 1.21959 0.98537 1.03566 0.92670 1.21478 0.92405 0.98264 1.01905 1.21154 1.01017 0.93946 0.94902 0.89419 1.21979 1.00904 0.98397 1.00017 1.21646 0.92021 1.04235 0.96798 1.21853 0.98578 0.92425 1.02199 0.92251 0.91718 0.86722 0.73955 0.83329 0.87896 0.73835 1.21397 1.21055 0.79535 0.90329 0.91146 0.91377 0.91199 0.93075 0.92823 0.91807 0.89103 0.89907 0.89165 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.56 113.37 1.20 1.34 16 2 O -0.34 -3.50 6.72 -43.60 -0.29 -3.80 16 3 C 0.45 4.04 6.71 71.24 0.48 4.52 16 4 O -0.53 -6.94 15.84 21.97 0.35 -6.59 16 5 C 0.20 0.37 0.63 2.86 0.00 0.38 16 6 N -0.70 0.94 3.98 -429.30 -1.71 -0.77 16 7 C 0.56 2.66 6.70 86.74 0.58 3.24 16 8 O -0.51 -6.25 10.58 19.48 0.21 -6.04 16 9 C -0.14 -0.37 5.88 -20.05 -0.12 -0.49 16 10 C 0.14 0.91 7.28 22.67 0.17 1.07 16 11 F -0.12 -1.44 15.55 44.97 0.70 -0.74 16 12 C -0.15 -0.57 8.62 22.28 0.19 -0.38 16 13 C -0.06 -0.08 5.30 -19.78 -0.10 -0.19 16 14 C -0.09 0.30 2.43 71.23 0.17 0.47 16 15 O -0.56 1.81 12.86 -148.98 -1.92 -0.10 16 16 Si 0.78 -3.72 30.18 68.60 2.07 -1.65 16 17 C 0.11 -0.02 7.23 22.33 0.16 0.14 16 18 F -0.12 -0.03 16.73 44.97 0.75 0.73 16 19 C -0.08 0.23 9.52 22.57 0.21 0.45 16 20 C -0.13 -0.38 4.23 30.59 0.13 -0.25 16 21 C -0.10 0.17 5.29 30.59 0.16 0.33 16 22 C -0.09 0.44 3.19 -10.79 -0.03 0.41 16 23 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 24 C -0.16 0.46 8.50 71.98 0.61 1.07 16 25 C -0.11 0.80 5.28 30.61 0.16 0.96 16 26 C -0.11 0.31 4.04 30.61 0.12 0.43 16 27 H 0.06 0.37 8.13 -2.39 -0.02 0.35 16 28 H 0.06 0.30 8.13 -2.39 -0.02 0.28 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.42 -3.53 5.35 -92.71 -0.50 -4.02 16 31 H 0.15 0.49 4.86 -2.91 -0.01 0.48 16 32 H 0.10 -0.74 7.89 -2.39 -0.02 -0.76 16 33 H 0.41 -5.63 8.74 -74.05 -0.65 -6.28 16 34 H -0.29 -0.58 6.74 99.48 0.67 0.09 16 35 H -0.28 -0.26 7.11 99.48 0.71 0.44 16 36 H 0.19 -2.06 6.40 -2.91 -0.02 -2.08 16 37 H 0.08 0.28 6.43 -2.39 -0.02 0.26 16 38 H 0.07 0.59 6.16 -2.38 -0.01 0.58 16 39 H 0.07 -0.13 7.60 -2.39 -0.02 -0.15 16 40 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.05 -0.04 4.81 -2.39 -0.01 -0.05 16 42 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H 0.09 -0.81 8.14 -2.38 -0.02 -0.83 16 45 H 0.08 -0.89 6.86 -2.39 -0.02 -0.90 16 46 H 0.09 0.00 6.16 -2.39 -0.01 -0.01 16 47 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: 0.00 -23.40 372.24 4.17 -19.23 By element: Atomic # 1 Polarization: -13.69 SS G_CDS: -0.08 Total: -13.77 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 4.10 Total: 13.51 kcal Atomic # 7 Polarization: 0.94 SS G_CDS: -1.71 Total: -0.77 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -1.65 Total: -16.54 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 1.45 Total: -0.01 kcal Atomic # 14 Polarization: -3.72 SS G_CDS: 2.07 Total: -1.65 kcal Total: -23.40 4.17 -19.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_12360598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.724 kcal (2) G-P(sol) polarization free energy of solvation -23.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds