Wall clock time and date at job start Tue Mar 9 2021 12:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47134 * 35.00015 * 5 3 2 7 7 C 1.34771 * 119.99989 * 299.99778 * 6 5 3 8 8 O 1.21280 * 120.00045 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99875 * 179.97438 * 7 6 5 10 10 N 1.46503 * 109.47055 * 180.02562 * 9 7 6 11 11 C 1.36833 * 125.06014 * 265.02759 * 10 9 7 12 12 C 1.34240 * 109.93615 * 179.97438 * 11 10 9 13 13 C 1.50704 * 126.50236 * 180.02562 * 12 11 10 14 14 O 1.42897 * 109.46901 * 254.97333 * 13 12 11 15 15 Si 1.86295 * 109.46826 * 14.97151 * 13 12 11 16 16 C 1.46495 * 106.99868 * 359.97438 * 12 11 10 17 17 C 1.39594 * 134.04016 * 180.02562 * 16 12 11 18 18 C 1.36654 * 119.76459 * 179.97438 * 17 16 12 19 19 C 1.38794 * 120.53126 * 0.02562 * 18 17 16 20 20 C 1.37782 * 120.66207 * 0.02562 * 19 18 17 21 21 C 1.37684 * 125.06208 * 84.72295 * 10 9 7 22 22 C 1.53006 * 109.47181 * 275.00075 * 5 3 2 23 23 C 1.53000 * 109.47414 * 180.02562 * 22 5 3 24 24 C 1.52998 * 109.47317 * 59.99808 * 23 22 5 25 25 H 1.08993 * 109.47033 * 180.02562 * 24 23 22 26 26 C 1.53000 * 109.46923 * 59.99892 * 24 23 22 27 27 C 1.53006 * 109.47035 * 300.00424 * 24 23 22 28 28 C 1.53001 * 109.47188 * 155.00304 * 5 3 2 29 29 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 30 30 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 31 31 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 32 32 H 0.97005 * 119.99569 * 120.00495 * 6 5 3 33 33 H 1.08994 * 109.47229 * 300.00699 * 9 7 6 34 34 H 1.09002 * 109.46964 * 60.00584 * 9 7 6 35 35 H 1.07997 * 125.03657 * 359.95986 * 11 10 9 36 36 H 1.09001 * 109.47239 * 134.97159 * 13 12 11 37 37 H 0.96695 * 114.00533 * 60.00008 * 14 13 12 38 38 H 1.48500 * 110.00274 * 58.68371 * 15 13 12 39 39 H 1.48504 * 109.99805 * 179.97438 * 15 13 12 40 40 H 1.08002 * 120.11233 * 359.95803 * 17 16 12 41 41 H 1.08000 * 119.73375 * 180.02562 * 18 17 16 42 42 H 1.07999 * 119.66754 * 179.97438 * 19 18 17 43 43 H 1.08003 * 120.10719 * 180.02562 * 20 19 18 44 44 H 1.08994 * 109.47314 * 299.99975 * 22 5 3 45 45 H 1.09007 * 109.46665 * 60.00107 * 22 5 3 46 46 H 1.09004 * 109.46872 * 300.00261 * 23 22 5 47 47 H 1.08994 * 109.47175 * 180.02562 * 23 22 5 48 48 H 1.09002 * 109.47367 * 300.00225 * 26 24 23 49 49 H 1.09006 * 109.47052 * 59.99875 * 26 24 23 50 50 H 1.09000 * 109.47517 * 180.02562 * 26 24 23 51 51 H 1.08994 * 109.47314 * 299.99713 * 27 24 23 52 52 H 1.09000 * 109.46934 * 179.97438 * 27 24 23 53 53 H 1.08997 * 109.47010 * 299.99380 * 28 5 3 54 54 H 1.08994 * 109.47199 * 60.00090 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1129 0.1707 -0.7933 7 6 3.8538 -1.1042 -0.4414 8 8 3.1679 -1.3374 0.5312 9 6 4.4156 -2.2400 -1.2572 10 7 3.9934 -3.5158 -0.6738 11 6 4.7282 -4.2570 0.2111 12 6 4.0538 -5.3675 0.5487 13 6 4.5160 -6.4434 1.4975 14 8 4.9168 -7.5951 0.7526 15 14 5.9593 -5.8147 2.4936 16 6 2.7828 -5.3346 -0.1790 17 6 1.6797 -6.1876 -0.2444 18 6 0.6182 -5.8639 -1.0418 19 6 0.6279 -4.6937 -1.7881 20 6 1.7068 -3.8381 -1.7392 21 6 2.7955 -4.1446 -0.9297 22 6 4.0828 1.1757 1.4362 23 6 5.6106 1.2565 1.4358 24 6 6.0508 2.5891 0.8265 25 1 7.1392 2.6463 0.8257 26 6 5.4794 3.7418 1.6544 27 6 5.5343 2.6882 -0.6104 28 6 4.0069 2.6073 -0.6100 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.6613 0.3574 -1.5713 33 1 4.0474 -2.1692 -2.2806 34 1 5.5042 -2.1830 -1.2580 35 1 5.7060 -3.9885 0.5827 36 1 3.7000 -6.7107 2.1689 37 1 5.6409 -7.4306 0.1333 38 1 5.5643 -4.5982 3.2482 39 1 6.4241 -6.8662 3.4336 40 1 1.6655 -7.1002 0.3330 41 1 -0.2352 -6.5239 -1.0917 42 1 -0.2183 -4.4517 -2.4140 43 1 1.7048 -2.9296 -2.3233 44 1 3.6762 1.9972 2.0260 45 1 3.7688 0.2264 1.8704 46 1 6.0177 0.4352 0.8458 47 1 5.9785 1.1854 2.4593 48 1 4.3909 3.6844 1.6548 49 1 5.8473 3.6712 2.6781 50 1 5.7926 4.6913 1.2202 51 1 5.9413 1.8670 -1.2003 52 1 5.8475 3.6378 -1.0443 53 1 3.6391 2.6779 -1.6336 54 1 3.6003 3.4288 -0.0203 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_9818708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:53 Heat of formation + Delta-G solvation = -72.869046 kcal Electronic energy + Delta-G solvation = -38910.085572 eV Core-core repulsion = 34200.651729 eV Total energy + Delta-G solvation = -4709.433843 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.192 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.68453 -42.26758 -40.57822 -39.43167 -38.06048 -37.62386 -37.48088 -35.49534 -34.06130 -32.24956 -31.97468 -31.13206 -30.18949 -29.15140 -28.68922 -27.73562 -25.76544 -24.51142 -23.92866 -23.71857 -22.84080 -21.98371 -21.33104 -20.61173 -19.61228 -18.86148 -18.67012 -18.40114 -17.91315 -17.55426 -17.45134 -17.14460 -16.73799 -16.40056 -16.24671 -15.99849 -15.58805 -15.47259 -15.38175 -15.20941 -15.01049 -14.75968 -14.64100 -14.55294 -14.38801 -14.03754 -14.00720 -13.79051 -13.70175 -13.58876 -13.33614 -13.12440 -13.06659 -12.72005 -12.68744 -12.63976 -12.50686 -12.23576 -12.09554 -12.08607 -11.87481 -11.84866 -11.78746 -11.39243 -11.23696 -11.14722 -10.83425 -10.47481 -10.27935 -10.23722 -9.10740 -8.57520 -5.03530 0.18350 0.66573 0.90661 1.36998 1.47426 1.49968 1.67436 1.75339 1.79696 2.02703 2.18237 2.98173 3.25972 3.51166 3.61330 3.64438 3.70169 3.75109 3.79357 3.93148 3.99457 4.02988 4.06334 4.09955 4.10823 4.14786 4.22939 4.25242 4.26445 4.34124 4.40615 4.47055 4.51489 4.52876 4.57673 4.59391 4.75811 4.79534 4.82645 4.85562 4.86912 4.91550 5.03194 5.07439 5.11395 5.16784 5.20079 5.27738 5.28649 5.35854 5.40836 5.53949 5.54189 5.69296 5.76890 5.79724 6.24816 6.28214 6.50486 6.56423 6.91933 7.22779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.329 6.329 3 C 0.448 3.552 4 O -0.539 6.539 5 C 0.208 3.792 6 N -0.703 5.703 7 C 0.489 3.511 8 O -0.523 6.523 9 C 0.090 3.910 10 N -0.462 5.462 11 C 0.085 3.915 12 C -0.227 4.227 13 C -0.042 4.042 14 O -0.561 6.561 15 Si 0.803 3.197 16 C -0.116 4.116 17 C -0.093 4.093 18 C -0.155 4.155 19 C -0.110 4.110 20 C -0.127 4.127 21 C 0.097 3.903 22 C -0.127 4.127 23 C -0.099 4.099 24 C -0.091 4.091 25 H 0.090 0.910 26 C -0.158 4.158 27 C -0.106 4.106 28 C -0.113 4.113 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.425 0.575 33 H 0.139 0.861 34 H 0.171 0.829 35 H 0.209 0.791 36 H 0.085 0.915 37 H 0.393 0.607 38 H -0.292 1.292 39 H -0.301 1.301 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.130 0.870 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.046 0.954 49 H 0.051 0.949 50 H 0.060 0.940 51 H 0.092 0.908 52 H 0.084 0.916 53 H 0.082 0.918 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.159 3.618 -6.724 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.243 6.243 3 C 0.290 3.710 4 O -0.428 6.428 5 C 0.119 3.881 6 N -0.362 5.362 7 C 0.274 3.726 8 O -0.397 6.397 9 C -0.034 4.034 10 N -0.144 5.144 11 C -0.041 4.041 12 C -0.235 4.235 13 C -0.151 4.151 14 O -0.369 6.369 15 Si 0.708 3.292 16 C -0.120 4.120 17 C -0.111 4.111 18 C -0.174 4.174 19 C -0.129 4.129 20 C -0.147 4.147 21 C -0.008 4.008 22 C -0.166 4.166 23 C -0.137 4.137 24 C -0.110 4.110 25 H 0.109 0.891 26 C -0.215 4.215 27 C -0.144 4.144 28 C -0.151 4.151 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.265 0.735 33 H 0.157 0.843 34 H 0.188 0.812 35 H 0.226 0.774 36 H 0.103 0.897 37 H 0.243 0.757 38 H -0.220 1.220 39 H -0.229 1.229 40 H 0.131 0.869 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.148 0.852 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.079 0.921 51 H 0.110 0.890 52 H 0.103 0.897 53 H 0.101 0.899 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.374 3.908 -5.029 10.521 hybrid contribution -1.757 0.044 0.220 1.771 sum 6.617 3.952 -4.809 9.085 Atomic orbital electron populations 1.23358 0.76884 1.04386 1.01944 1.86886 1.23043 1.31986 1.82373 1.24958 0.93358 0.81454 0.71197 1.90666 1.67726 1.37490 1.46947 1.20089 0.82897 0.90056 0.95022 1.45835 1.54620 1.03565 1.32201 1.21463 0.80627 0.84549 0.85980 1.90824 1.36612 1.84019 1.28220 1.21972 1.05039 0.78414 0.97987 1.43411 1.13886 1.18186 1.38956 1.22046 0.98287 0.90924 0.92825 1.20747 0.95864 1.00005 1.06837 1.24571 1.06537 0.86917 0.97067 1.86451 1.58207 1.33368 1.58888 0.94174 0.79644 0.75835 0.79514 1.19343 0.95969 0.95926 1.00805 1.20413 0.92898 0.98732 0.99105 1.20863 0.99034 0.98567 0.98904 1.21069 0.98165 0.94077 0.99609 1.20182 0.92441 1.01167 1.00930 1.18297 0.88841 0.93564 1.00083 1.21920 0.98879 1.02891 0.92877 1.21461 0.91950 0.98405 1.01837 1.21158 1.01076 0.93883 0.94855 0.89136 1.21996 1.00684 0.98755 1.00095 1.21603 0.91736 1.04296 0.96728 1.21792 0.98805 0.92626 1.01831 0.91690 0.92949 0.87102 0.73509 0.84334 0.81159 0.77425 0.89732 0.75693 1.21980 1.22940 0.86945 0.85053 0.84037 0.85195 0.91666 0.91394 0.90013 0.91628 0.93540 0.92993 0.92056 0.88962 0.89741 0.89923 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 113.37 1.20 1.35 16 2 O -0.33 -2.74 6.73 -43.67 -0.29 -3.03 16 3 C 0.45 3.24 6.71 71.24 0.48 3.72 16 4 O -0.54 -6.85 15.84 21.98 0.35 -6.50 16 5 C 0.21 -0.28 0.63 2.86 0.00 -0.28 16 6 N -0.70 5.54 4.03 -426.32 -1.72 3.82 16 7 C 0.49 -1.78 6.83 87.66 0.60 -1.18 16 8 O -0.52 -3.60 11.66 20.41 0.24 -3.36 16 9 C 0.09 -0.91 6.48 85.63 0.56 -0.35 16 10 N -0.46 0.53 2.27 -519.99 -1.18 -0.65 16 11 C 0.08 -0.15 9.89 83.00 0.82 0.67 16 12 C -0.23 -0.97 5.58 -18.62 -0.10 -1.08 16 13 C -0.04 -0.14 3.06 71.24 0.22 0.07 16 14 O -0.56 -2.04 12.88 -148.98 -1.92 -3.96 16 15 Si 0.80 -1.06 30.75 68.60 2.11 1.05 16 16 C -0.12 -1.05 6.35 -20.20 -0.13 -1.18 16 17 C -0.09 -0.90 10.05 22.23 0.22 -0.68 16 18 C -0.15 -1.05 9.97 22.03 0.22 -0.83 16 19 C -0.11 -0.49 10.01 22.29 0.22 -0.27 16 20 C -0.13 -0.53 10.00 22.37 0.22 -0.30 16 21 C 0.10 0.54 6.79 39.03 0.27 0.80 16 22 C -0.13 -0.06 4.23 30.60 0.13 0.07 16 23 C -0.10 0.55 5.29 30.59 0.16 0.71 16 24 C -0.09 0.70 3.20 -10.79 -0.03 0.66 16 25 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 26 C -0.16 0.62 8.50 71.98 0.61 1.23 16 27 C -0.11 1.08 5.28 30.58 0.16 1.24 16 28 C -0.11 0.53 4.03 30.58 0.12 0.65 16 29 H 0.06 0.26 8.13 -2.39 -0.02 0.24 16 30 H 0.05 0.36 8.13 -2.39 -0.02 0.34 16 31 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.42 -6.68 7.32 -92.70 -0.68 -7.36 16 33 H 0.14 -1.94 8.14 -2.39 -0.02 -1.96 16 34 H 0.17 -3.32 8.12 -2.39 -0.02 -3.34 16 35 H 0.21 -2.25 6.34 -2.91 -0.02 -2.27 16 36 H 0.09 0.64 7.96 -2.39 -0.02 0.62 16 37 H 0.39 -2.23 8.70 -74.06 -0.64 -2.88 16 38 H -0.29 -1.40 7.11 99.48 0.71 -0.69 16 39 H -0.30 -1.88 7.11 99.48 0.71 -1.17 16 40 H 0.11 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.13 0.42 8.06 -2.91 -0.02 0.39 16 42 H 0.14 -0.04 8.06 -2.91 -0.02 -0.07 16 43 H 0.13 -0.01 8.06 -2.91 -0.02 -0.04 16 44 H 0.06 0.21 6.43 -2.39 -0.02 0.19 16 45 H 0.07 0.42 6.17 -2.38 -0.01 0.41 16 46 H 0.08 -0.70 7.61 -2.38 -0.02 -0.72 16 47 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 48 H 0.05 -0.04 4.81 -2.39 -0.01 -0.05 16 49 H 0.05 -0.15 8.14 -2.38 -0.02 -0.17 16 50 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 51 H 0.09 -1.40 6.86 -2.39 -0.02 -1.41 16 52 H 0.08 -0.90 8.14 -2.39 -0.02 -0.92 16 53 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 54 H 0.08 -0.02 6.16 -2.39 -0.01 -0.04 16 Total: 0.00 -32.28 421.93 3.18 -29.09 By element: Atomic # 1 Polarization: -21.15 SS G_CDS: -0.34 Total: -21.49 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 5.95 Total: 5.05 kcal Atomic # 7 Polarization: 6.07 SS G_CDS: -2.90 Total: 3.17 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -1.63 Total: -16.86 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.11 Total: 1.05 kcal Total: -32.28 3.18 -29.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_9818708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.776 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds