Wall clock time and date at job start Tue Mar 9 2021 12:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42890 * 1 3 3 Si 1.86298 * 109.47100 * 2 1 4 4 C 1.50703 * 109.47419 * 120.00239 * 2 1 3 5 5 C 1.38396 * 119.82791 * 64.99985 * 4 2 1 6 6 C 1.37887 * 120.17094 * 180.02562 * 5 4 2 7 7 C 1.39843 * 119.82778 * 359.97438 * 6 5 4 8 8 C 1.47206 * 120.16892 * 179.97438 * 7 6 5 9 9 C 1.34812 * 119.99560 * 180.02562 * 8 7 6 10 10 C 1.46428 * 119.99590 * 179.97438 * 9 8 7 11 11 O 1.21698 * 120.00539 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99595 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99861 * 180.02562 * 12 10 9 14 14 H 1.09002 * 112.84933 * 336.19822 * 13 12 10 15 15 C 1.53777 * 113.61142 * 107.50472 * 13 12 10 16 16 C 1.53781 * 87.08198 * 139.98330 * 15 13 12 17 17 H 1.08998 * 113.69162 * 220.01251 * 16 15 13 18 18 O 1.42901 * 113.61534 * 89.11121 * 16 15 13 19 19 C 1.35902 * 116.99795 * 105.83525 * 18 16 15 20 20 C 1.38735 * 120.05433 * 354.30079 * 19 18 16 21 21 C 1.38146 * 119.94263 * 179.97438 * 20 19 18 22 22 C 1.38263 * 120.05460 * 359.97438 * 21 20 19 23 23 C 1.38268 * 120.11502 * 0.28378 * 22 21 20 24 24 C 1.38151 * 120.05089 * 359.44666 * 23 22 21 25 25 C 1.53772 * 113.61518 * 205.00197 * 13 12 10 26 26 C 1.39840 * 119.65774 * 0.25811 * 7 6 5 27 27 C 1.37887 * 119.82177 * 359.46513 * 26 7 6 28 28 H 0.96700 * 114.00215 * 299.99719 * 1 2 3 29 29 H 1.09003 * 109.47375 * 240.00273 * 2 1 3 30 30 H 1.48507 * 110.00362 * 178.68013 * 3 2 1 31 31 H 1.48504 * 110.00334 * 299.99986 * 3 2 1 32 32 H 1.08001 * 119.91639 * 359.97438 * 5 4 2 33 33 H 1.08005 * 120.08951 * 180.02562 * 6 5 4 34 34 H 1.07996 * 120.00467 * 0.02562 * 8 7 6 35 35 H 1.08001 * 120.00190 * 0.02562 * 9 8 7 36 36 H 0.97001 * 119.99787 * 0.02562 * 12 10 9 37 37 H 1.08994 * 113.61871 * 25.43250 * 15 13 12 38 38 H 1.09007 * 113.61054 * 254.52962 * 15 13 12 39 39 H 1.07995 * 120.02712 * 359.97438 * 20 19 18 40 40 H 1.07995 * 119.96919 * 179.97438 * 21 20 19 41 41 H 1.07997 * 119.94116 * 179.97438 * 22 21 20 42 42 H 1.07991 * 119.97361 * 179.71875 * 23 22 21 43 43 H 1.07996 * 120.02722 * 180.27674 * 24 23 22 44 44 H 1.09008 * 113.61578 * 105.46755 * 25 13 12 45 45 H 1.09000 * 113.69238 * 334.57960 * 25 13 12 46 46 H 1.08000 * 120.08501 * 179.74936 * 26 7 6 47 47 H 1.08002 * 119.90949 * 180.27642 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6824 -2.0619 1.3949 6 6 2.1384 -2.7189 2.5182 7 6 2.8544 -2.0161 3.4924 8 6 3.3442 -2.7099 4.6948 9 6 4.0336 -2.0289 5.6320 10 6 4.5203 -2.7189 6.8283 11 8 4.3029 -3.9071 6.9764 12 7 5.2101 -2.0382 7.7650 13 6 5.6975 -2.7286 8.9617 14 1 5.1254 -3.6266 9.1949 15 6 7.2198 -2.9462 8.9702 16 6 7.1822 -2.5977 10.4675 17 1 8.0177 -1.9785 10.7942 18 8 6.9659 -3.7291 11.3133 19 6 8.0362 -4.1905 12.0122 20 6 9.2934 -3.6441 11.7987 21 6 10.3797 -4.1145 12.5108 22 6 10.2146 -5.1285 13.4361 23 6 8.9636 -5.6784 13.6470 24 6 7.8731 -5.2077 12.9414 25 6 5.9029 -1.7984 10.1689 26 6 3.0976 -0.6497 3.3212 27 6 2.6400 -0.0082 2.1897 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 3.5346 1.7704 0.0321 31 1 1.5614 2.4680 -1.2085 32 1 1.1290 -2.6032 0.6418 33 1 1.9438 -3.7736 2.6449 34 1 3.1512 -3.7643 4.8261 35 1 4.2263 -0.9744 5.5008 36 1 5.3837 -1.0912 7.6468 37 1 7.7677 -2.2223 8.3670 38 1 7.5148 -3.9761 8.7688 39 1 9.4228 -2.8518 11.0763 40 1 11.3587 -3.6898 12.3446 41 1 11.0652 -5.4952 13.9916 42 1 8.8381 -6.4734 14.3670 43 1 6.8954 -5.6344 13.1096 44 1 5.1346 -1.9015 10.9353 45 1 6.0907 -0.7602 9.8949 46 1 3.6463 -0.0994 4.0712 47 1 2.8309 1.0461 2.0540 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11987230_12360594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:59 Heat of formation + Delta-G solvation = 4.002190 kcal Electronic energy + Delta-G solvation = -28181.157192 eV Core-core repulsion = 24069.325414 eV Total energy + Delta-G solvation = -4111.831777 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.151 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.74959 -40.86090 -40.46625 -39.34700 -37.79016 -37.36012 -35.07358 -34.26829 -32.20360 -31.95470 -31.24983 -30.65090 -27.51458 -26.86567 -26.04410 -24.24352 -23.90849 -23.42924 -23.06117 -21.97684 -21.04744 -20.25490 -19.26471 -18.83874 -18.10966 -17.56750 -17.12509 -16.92115 -16.73793 -16.54800 -16.30849 -16.11135 -15.99308 -15.67643 -15.36229 -15.35071 -15.07032 -14.88633 -14.53487 -14.38407 -14.18841 -13.97197 -13.82405 -13.60681 -13.50173 -13.34483 -13.14049 -13.03186 -12.58258 -12.49598 -12.25395 -12.08708 -12.05824 -11.72266 -11.48109 -11.37742 -11.35276 -11.05763 -10.43601 -10.14061 -9.98811 -9.98114 -9.25360 -9.19475 -4.99958 -0.56128 0.36189 0.39074 0.45274 0.87490 1.30990 1.64506 1.97963 2.08213 2.17066 2.20735 2.80432 2.81077 3.32308 3.42245 3.48002 3.58918 3.68291 3.71846 3.81223 3.85576 3.90597 3.94477 4.00612 4.12224 4.19699 4.21157 4.31026 4.35454 4.42754 4.47289 4.51780 4.54242 4.62012 4.66383 4.72591 4.82471 4.83757 4.93119 4.95737 5.01234 5.06251 5.09472 5.16429 5.33048 5.37619 5.45512 5.47071 5.49331 5.58744 5.59337 5.84837 5.89645 6.44503 6.54343 6.75657 7.21562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.081 4.081 3 Si 0.782 3.218 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.105 4.105 7 C -0.081 4.081 8 C -0.023 4.023 9 C -0.205 4.205 10 C 0.540 3.460 11 O -0.597 6.597 12 N -0.699 5.699 13 C 0.121 3.879 14 H 0.083 0.917 15 C -0.164 4.164 16 C 0.051 3.949 17 H 0.115 0.885 18 O -0.315 6.315 19 C 0.111 3.889 20 C -0.215 4.215 21 C -0.088 4.088 22 C -0.167 4.167 23 C -0.087 4.087 24 C -0.175 4.175 25 C -0.124 4.124 26 C -0.093 4.093 27 C -0.119 4.119 28 H 0.396 0.604 29 H 0.104 0.896 30 H -0.282 1.282 31 H -0.303 1.303 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.170 0.830 36 H 0.422 0.578 37 H 0.124 0.876 38 H 0.056 0.944 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.141 0.859 46 H 0.161 0.839 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 8.307 2.341 9.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.190 4.190 3 Si 0.688 3.312 4 C -0.113 4.113 5 C -0.127 4.127 6 C -0.123 4.123 7 C -0.081 4.081 8 C -0.043 4.043 9 C -0.225 4.225 10 C 0.330 3.670 11 O -0.479 6.479 12 N -0.349 5.349 13 C 0.016 3.984 14 H 0.102 0.898 15 C -0.202 4.202 16 C -0.006 4.006 17 H 0.132 0.868 18 O -0.229 6.229 19 C 0.066 3.934 20 C -0.233 4.233 21 C -0.105 4.105 22 C -0.185 4.185 23 C -0.105 4.105 24 C -0.194 4.194 25 C -0.161 4.161 26 C -0.110 4.110 27 C -0.136 4.136 28 H 0.246 0.754 29 H 0.121 0.879 30 H -0.209 1.209 31 H -0.232 1.232 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.136 0.864 35 H 0.187 0.813 36 H 0.261 0.739 37 H 0.142 0.858 38 H 0.075 0.925 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.147 0.853 44 H 0.100 0.900 45 H 0.159 0.841 46 H 0.179 0.821 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.978 7.701 1.500 8.392 hybrid contribution 0.057 -0.897 -0.485 1.021 sum 3.034 6.804 1.015 7.519 Atomic orbital electron populations 1.86479 1.17257 1.82230 1.50511 1.25290 0.85325 1.11247 0.97133 0.93730 0.77822 0.74807 0.84848 1.20623 0.98880 0.94846 0.96987 1.21067 0.99421 0.94335 0.97862 1.21602 0.96627 1.00615 0.93428 1.19116 1.00084 0.94427 0.94498 1.22360 0.91507 0.99472 0.90974 1.23025 1.03380 1.02269 0.93852 1.18886 0.77408 0.86340 0.84336 1.90827 1.59702 1.17847 1.79563 1.45711 1.55267 1.13918 1.20053 1.22405 0.94248 0.96812 0.84979 0.89844 1.24022 0.96960 1.03200 0.96057 1.23366 1.00880 0.86884 0.89451 0.86768 1.86068 1.33773 1.46757 1.56277 1.19256 0.86841 0.94899 0.92390 1.21517 0.92096 1.04599 1.05121 1.21333 0.99105 0.95699 0.94404 1.21442 0.98089 0.98544 1.00455 1.21289 0.91959 0.99059 0.98210 1.20708 1.00848 0.99153 0.98656 1.23602 0.96285 0.99967 0.96273 1.21680 0.98378 0.93018 0.97958 1.21190 0.98261 1.00445 0.93753 0.75433 0.87855 1.20898 1.23166 0.85552 0.84872 0.86404 0.81302 0.73926 0.85762 0.92468 0.83565 0.83626 0.84020 0.83634 0.85347 0.89989 0.84105 0.82117 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.16 12.83 -148.98 -1.91 -1.75 16 2 C -0.08 0.12 2.80 71.24 0.20 0.32 16 3 Si 0.78 -3.11 29.78 68.60 2.04 -1.07 16 4 C -0.11 0.15 5.36 -19.79 -0.11 0.04 16 5 C -0.11 -0.09 9.66 22.22 0.21 0.12 16 6 C -0.10 -0.08 9.80 22.58 0.22 0.14 16 7 C -0.08 0.04 5.87 -20.15 -0.12 -0.08 16 8 C -0.02 -0.02 9.46 23.84 0.23 0.20 16 9 C -0.21 0.40 9.41 23.62 0.22 0.62 16 10 C 0.54 2.30 7.74 86.37 0.67 2.97 16 11 O -0.60 -9.04 15.83 -4.34 -0.07 -9.11 16 12 N -0.70 1.90 5.35 -444.26 -2.38 -0.47 16 13 C 0.12 0.05 4.17 45.51 0.19 0.24 16 14 H 0.08 0.72 7.46 -2.39 -0.02 0.70 16 15 C -0.16 0.23 7.71 31.12 0.24 0.47 16 16 C 0.05 -0.09 3.75 31.12 0.12 0.03 16 17 H 0.11 -0.66 5.96 -2.39 -0.01 -0.68 16 18 O -0.31 -1.83 10.06 -92.44 -0.93 -2.76 16 19 C 0.11 0.64 6.68 22.51 0.15 0.79 16 20 C -0.21 -0.45 9.02 22.37 0.20 -0.25 16 21 C -0.09 -0.07 10.04 22.25 0.22 0.15 16 22 C -0.17 -0.21 10.04 22.28 0.22 0.01 16 23 C -0.09 -0.23 10.04 22.26 0.22 -0.01 16 24 C -0.18 -0.99 9.99 22.37 0.22 -0.77 16 25 C -0.12 0.64 7.66 31.12 0.24 0.88 16 26 C -0.09 0.43 9.41 22.57 0.21 0.65 16 27 C -0.12 0.55 8.65 22.23 0.19 0.74 16 28 H 0.40 -3.39 8.70 -74.06 -0.64 -4.03 16 29 H 0.10 0.02 7.96 -2.39 -0.02 0.00 16 30 H -0.28 -0.06 7.11 99.48 0.71 0.64 16 31 H -0.30 -1.30 7.11 99.48 0.71 -0.59 16 32 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 33 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 34 H 0.12 0.55 7.52 -2.91 -0.02 0.53 16 35 H 0.17 -1.78 6.07 -2.91 -0.02 -1.79 16 36 H 0.42 -4.70 8.71 -92.71 -0.81 -5.50 16 37 H 0.12 -0.83 8.14 -2.39 -0.02 -0.85 16 38 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 39 H 0.15 -0.38 5.92 -2.91 -0.02 -0.40 16 40 H 0.15 -0.58 8.06 -2.91 -0.02 -0.61 16 41 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.15 -0.25 8.06 -2.92 -0.02 -0.28 16 43 H 0.13 0.61 8.06 -2.91 -0.02 0.58 16 44 H 0.08 -0.24 8.14 -2.38 -0.02 -0.26 16 45 H 0.14 -1.74 8.12 -2.39 -0.02 -1.76 16 46 H 0.16 -1.79 6.17 -2.91 -0.02 -1.81 16 47 H 0.15 -1.49 4.88 -2.91 -0.01 -1.50 16 Total: 0.00 -26.11 395.58 0.32 -25.79 By element: Atomic # 1 Polarization: -17.50 SS G_CDS: -0.40 Total: -17.89 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 3.96 Total: 7.26 kcal Atomic # 7 Polarization: 1.90 SS G_CDS: -2.38 Total: -0.47 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -2.91 Total: -13.62 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.04 Total: -1.07 kcal Total: -26.11 0.32 -25.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11987230_12360594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.794 kcal (2) G-P(sol) polarization free energy of solvation -26.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds