Wall clock time and date at job start Tue Mar 9 2021 12:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.47155 * 2 1 4 4 C 1.50701 * 109.47195 * 120.00171 * 2 1 3 5 5 C 1.38901 * 119.67134 * 245.02473 * 4 2 1 6 6 C 1.36481 * 120.61383 * 180.02562 * 5 4 2 7 7 C 1.40059 * 119.82839 * 359.96008 * 6 5 4 8 8 C 1.41591 * 133.38376 * 179.97438 * 7 6 5 9 9 C 1.35862 * 107.73245 * 180.02562 * 8 7 6 10 10 C 1.47064 * 125.43018 * 179.97438 * 9 8 7 11 11 O 1.21651 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00219 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00099 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.84926 * 334.66393 * 13 12 10 15 15 C 1.53781 * 113.61418 * 105.86398 * 13 12 10 16 16 C 1.54053 * 86.98518 * 89.16542 * 15 13 12 17 17 H 1.08998 * 113.60722 * 270.88481 * 16 15 13 18 18 O 1.42897 * 113.62154 * 139.97657 * 16 15 13 19 19 C 1.35906 * 116.99599 * 104.61251 * 18 16 15 20 20 C 1.38732 * 120.05195 * 173.78210 * 19 18 16 21 21 C 1.38151 * 119.94547 * 179.70583 * 20 19 18 22 22 C 1.38263 * 120.04855 * 0.59392 * 21 20 19 23 23 C 1.38262 * 120.11753 * 359.68108 * 22 21 20 24 24 C 1.38152 * 120.05363 * 0.02562 * 23 22 21 25 25 C 1.53777 * 87.07914 * 25.42925 * 16 15 13 26 26 N 1.38146 * 109.14409 * 0.25911 * 9 8 7 27 27 C 1.37485 * 108.79087 * 359.56585 * 26 9 8 28 28 C 1.37706 * 119.67654 * 64.99368 * 4 2 1 29 29 H 0.96698 * 114.00466 * 300.00421 * 1 2 3 30 30 H 1.09007 * 109.47278 * 240.00000 * 2 1 3 31 31 H 1.48502 * 109.99941 * 178.68350 * 3 2 1 32 32 H 1.48497 * 109.99817 * 299.99697 * 3 2 1 33 33 H 1.07997 * 119.69538 * 359.97438 * 5 4 2 34 34 H 1.07999 * 120.08347 * 179.97438 * 6 5 4 35 35 H 1.07998 * 126.13604 * 359.97438 * 8 7 6 36 36 H 0.97003 * 120.00311 * 0.02562 * 12 10 9 37 37 H 1.09002 * 113.60981 * 203.66067 * 15 13 12 38 38 H 1.08997 * 113.61449 * 334.56502 * 15 13 12 39 39 H 1.08005 * 120.02822 * 359.97438 * 20 19 18 40 40 H 1.07996 * 119.97409 * 180.32089 * 21 20 19 41 41 H 1.08000 * 119.94140 * 179.70558 * 22 21 20 42 42 H 1.08002 * 119.98140 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.02602 * 179.97438 * 24 23 22 44 44 H 1.08999 * 113.61751 * 220.02769 * 25 16 15 45 45 H 1.08996 * 113.61419 * 89.12265 * 25 16 15 46 46 H 0.97002 * 125.60518 * 179.71634 * 26 9 8 47 47 H 1.07998 * 120.09742 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6410 -0.0022 2.1918 6 6 3.1052 -0.6264 3.3132 7 6 2.8648 -1.9936 3.4996 8 6 3.2030 -2.9096 4.5249 9 6 2.7045 -4.1243 4.1756 10 6 2.8333 -5.3579 4.9657 11 8 3.4262 -5.3409 6.0278 12 7 2.2945 -6.5074 4.5131 13 6 2.4223 -7.7362 5.3005 14 1 3.2913 -7.7289 5.9583 15 6 1.1206 -8.1552 6.0039 16 6 0.7804 -8.9460 4.7264 17 1 0.2365 -8.3625 3.9836 18 8 0.1811 -10.2176 4.9826 19 6 -1.1569 -10.3234 4.7687 20 6 -1.7816 -11.5577 4.8722 21 6 -3.1428 -11.6617 4.6603 22 6 -3.8803 -10.5388 4.3332 23 6 -3.2591 -9.3084 4.2238 24 6 -1.8992 -9.1982 4.4407 25 6 2.2938 -9.0201 4.4638 26 7 2.0629 -4.0172 2.9568 27 6 2.1445 -2.7140 2.5264 28 6 1.6818 -2.0552 1.3909 29 1 -0.3934 0.4417 0.7650 30 1 1.7924 -0.5139 -0.8900 31 1 3.5346 1.7703 0.0321 32 1 1.5615 2.4678 -1.2085 33 1 2.8278 1.0520 2.0502 34 1 3.6564 -0.0676 4.0549 35 1 3.7584 -2.6836 5.4231 36 1 1.8220 -6.5211 3.6660 37 1 1.2805 -8.7862 6.8783 38 1 0.4425 -7.3244 6.1985 39 1 -1.2050 -12.4360 5.1226 40 1 -3.6305 -12.6214 4.7459 41 1 -4.9435 -10.6229 4.1632 42 1 -3.8373 -8.4327 3.9686 43 1 -1.4143 -8.2370 4.3548 44 1 2.5622 -8.8869 3.4158 45 1 2.7738 -9.8870 4.9178 46 1 1.6248 -4.7419 2.4837 47 1 1.1283 -2.5969 0.6382 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11987230_13158378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:33 Heat of formation + Delta-G solvation = 23.933001 kcal Electronic energy + Delta-G solvation = -30887.712343 eV Core-core repulsion = 26583.092780 eV Total energy + Delta-G solvation = -4304.619564 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.76362 -41.74388 -40.70114 -39.44879 -38.88283 -37.55557 -36.88237 -34.38689 -33.28320 -31.97866 -31.14831 -30.68818 -30.42822 -27.36031 -26.95038 -26.05109 -24.51241 -23.59154 -23.24853 -22.93163 -22.04319 -21.38391 -20.68890 -19.77353 -19.33206 -18.42767 -17.86341 -17.39629 -17.10694 -16.80990 -16.76284 -16.58490 -16.35338 -16.15397 -15.73127 -15.56080 -15.49155 -15.30571 -14.96993 -14.88475 -14.71188 -14.53585 -14.41289 -14.14758 -14.04838 -13.69127 -13.58772 -13.26159 -13.12421 -12.70608 -12.57006 -12.53270 -12.49831 -12.06425 -11.99028 -11.66235 -11.64247 -11.49248 -11.40399 -10.98058 -10.44745 -10.40656 -10.00259 -9.35414 -9.20550 -8.85642 -4.94398 -0.40920 0.34065 0.43796 0.51418 0.90014 1.34259 1.64558 1.69645 1.85593 2.02252 2.10138 2.17847 2.75830 2.78744 3.22440 3.30200 3.44697 3.55342 3.63018 3.66963 3.69456 3.72963 3.87692 3.95679 4.02769 4.18282 4.22742 4.27021 4.28065 4.42851 4.44754 4.47811 4.50206 4.56848 4.60907 4.64953 4.67118 4.70943 4.82066 4.86477 4.87002 4.97370 5.03746 5.21564 5.30953 5.35191 5.39285 5.44098 5.52166 5.55984 5.57287 5.81913 5.95966 6.16119 6.37333 6.42768 6.79610 6.85173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.071 4.071 3 Si 0.775 3.225 4 C -0.089 4.089 5 C -0.146 4.146 6 C -0.057 4.057 7 C -0.135 4.135 8 C -0.114 4.114 9 C 0.009 3.991 10 C 0.591 3.409 11 O -0.554 6.554 12 N -0.698 5.698 13 C 0.124 3.876 14 H 0.106 0.894 15 C -0.164 4.164 16 C 0.052 3.948 17 H 0.113 0.887 18 O -0.314 6.314 19 C 0.111 3.889 20 C -0.172 4.172 21 C -0.087 4.087 22 C -0.168 4.168 23 C -0.089 4.089 24 C -0.217 4.217 25 C -0.124 4.124 26 N -0.565 5.565 27 C 0.108 3.892 28 C -0.111 4.111 29 H 0.396 0.604 30 H 0.109 0.891 31 H -0.287 1.287 32 H -0.302 1.302 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.157 0.843 36 H 0.412 0.588 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.431 0.569 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 0.958 -1.891 3.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.181 4.181 3 Si 0.682 3.318 4 C -0.091 4.091 5 C -0.164 4.164 6 C -0.076 4.076 7 C -0.140 4.140 8 C -0.141 4.141 9 C -0.101 4.101 10 C 0.379 3.621 11 O -0.432 6.432 12 N -0.349 5.349 13 C 0.018 3.982 14 H 0.124 0.876 15 C -0.203 4.203 16 C -0.004 4.004 17 H 0.131 0.869 18 O -0.228 6.228 19 C 0.066 3.934 20 C -0.191 4.191 21 C -0.105 4.105 22 C -0.186 4.186 23 C -0.106 4.106 24 C -0.236 4.236 25 C -0.162 4.162 26 N -0.171 5.171 27 C -0.002 4.002 28 C -0.132 4.132 29 H 0.246 0.754 30 H 0.126 0.874 31 H -0.214 1.214 32 H -0.231 1.231 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.248 0.752 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.120 0.880 45 H 0.131 0.869 46 H 0.271 0.729 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.866 0.896 -2.046 2.910 hybrid contribution -0.328 -0.960 -0.709 1.238 sum -2.194 -0.064 -2.755 3.522 Atomic orbital electron populations 1.86469 1.17099 1.82157 1.50566 1.25153 0.85322 1.10670 0.96923 0.93618 0.77959 0.75497 0.84713 1.20164 0.98528 0.93582 0.96790 1.20693 1.00949 1.00333 0.94455 1.20653 0.97532 0.91699 0.97693 1.18440 1.04284 0.95175 0.96057 1.21119 1.02288 0.90558 1.00169 1.19902 1.05532 0.95393 0.89239 1.17254 0.78174 0.82345 0.84348 1.90875 1.43535 1.85388 1.23373 1.45427 1.56957 1.07653 1.24850 1.21591 0.99169 0.83063 0.94340 0.87631 1.24047 0.97572 1.00114 0.98592 1.24449 0.94271 0.83413 0.98274 0.86901 1.86151 1.19062 1.35128 1.82443 1.19250 0.83175 0.94700 0.96232 1.20730 0.95598 0.96003 1.06750 1.21308 0.92727 1.00001 0.96422 1.21428 1.01309 0.92817 1.03056 1.21303 0.93947 0.98625 0.96769 1.21451 0.95772 0.98288 1.08053 1.23539 0.92909 0.97239 1.02469 1.41771 1.48753 1.08947 1.17607 1.18438 1.00788 0.84342 0.96669 1.19999 1.02939 0.94218 0.96000 0.75408 0.87398 1.21368 1.23075 0.83408 0.83348 0.82582 0.75162 0.88136 0.90588 0.84951 0.83584 0.84172 0.83964 0.84200 0.88030 0.86868 0.72861 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.97 12.83 -148.98 -1.91 -0.94 16 2 C -0.07 0.17 2.79 71.24 0.20 0.37 16 3 Si 0.78 -2.61 29.76 68.60 2.04 -0.57 16 4 C -0.09 0.14 5.36 -19.83 -0.11 0.03 16 5 C -0.15 0.38 8.59 22.02 0.19 0.57 16 6 C -0.06 0.05 10.06 22.30 0.22 0.27 16 7 C -0.14 -0.32 6.16 -21.36 -0.13 -0.45 16 8 C -0.11 -0.41 10.53 22.55 0.24 -0.17 16 9 C 0.01 0.01 6.97 39.91 0.28 0.29 16 10 C 0.59 1.77 7.80 86.56 0.68 2.45 16 11 O -0.55 -6.25 16.46 -4.19 -0.07 -6.32 16 12 N -0.70 2.84 5.26 -443.64 -2.33 0.51 16 13 C 0.12 -0.36 4.30 45.52 0.20 -0.17 16 14 H 0.11 0.07 7.50 -2.39 -0.02 0.05 16 15 C -0.16 0.34 7.73 31.21 0.24 0.58 16 16 C 0.05 -0.17 3.52 31.21 0.11 -0.06 16 17 H 0.11 -0.78 6.04 -2.39 -0.01 -0.79 16 18 O -0.31 -0.91 10.15 -92.49 -0.94 -1.84 16 19 C 0.11 0.41 6.68 22.50 0.15 0.56 16 20 C -0.17 -0.58 9.99 22.37 0.22 -0.36 16 21 C -0.09 -0.09 10.04 22.26 0.22 0.14 16 22 C -0.17 -0.04 10.04 22.28 0.22 0.18 16 23 C -0.09 0.00 10.04 22.25 0.22 0.22 16 24 C -0.22 -0.18 9.01 22.37 0.20 0.02 16 25 C -0.12 0.71 7.65 31.12 0.24 0.94 16 26 N -0.56 1.72 6.07 -177.18 -1.08 0.64 16 27 C 0.11 0.06 7.25 39.13 0.28 0.34 16 28 C -0.11 0.08 9.69 22.37 0.22 0.29 16 29 H 0.40 -3.77 8.70 -74.06 -0.64 -4.41 16 30 H 0.11 -0.15 7.96 -2.38 -0.02 -0.17 16 31 H -0.29 -0.48 7.11 99.48 0.71 0.23 16 32 H -0.30 -1.36 7.11 99.48 0.71 -0.65 16 33 H 0.15 -1.05 4.85 -2.91 -0.01 -1.07 16 34 H 0.15 -0.73 8.06 -2.91 -0.02 -0.75 16 35 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 36 H 0.41 -4.27 7.76 -92.71 -0.72 -4.99 16 37 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.13 0.24 8.06 -2.91 -0.02 0.22 16 40 H 0.15 -0.48 8.06 -2.91 -0.02 -0.51 16 41 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 42 H 0.14 -0.62 8.06 -2.91 -0.02 -0.64 16 43 H 0.14 -0.47 5.95 -2.91 -0.02 -0.49 16 44 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 45 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H 0.43 -4.23 8.12 -92.71 -0.75 -4.98 16 47 H 0.13 -0.37 8.06 -2.91 -0.02 -0.39 16 Total: 0.00 -22.38 394.79 -1.22 -23.60 By element: Atomic # 1 Polarization: -20.09 SS G_CDS: -1.03 Total: -21.12 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 4.10 Total: 6.05 kcal Atomic # 7 Polarization: 4.56 SS G_CDS: -3.41 Total: 1.15 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -2.92 Total: -9.11 kcal Atomic # 14 Polarization: -2.61 SS G_CDS: 2.04 Total: -0.57 kcal Total: -22.38 -1.22 -23.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11987230_13158378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.531 kcal (2) G-P(sol) polarization free energy of solvation -22.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds