Wall clock time and date at job start Tue Mar 9 2021 12:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36413 * 125.80202 * 2 1 4 4 C 1.47377 * 127.19382 * 0.02562 * 3 2 1 5 5 O 1.21614 * 119.99846 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00200 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00018 * 180.02562 * 6 4 3 8 8 H 1.09003 * 112.85101 * 336.19082 * 7 6 4 9 9 C 1.53781 * 113.61676 * 107.50445 * 7 6 4 10 10 C 1.53782 * 87.08395 * 89.11342 * 9 7 6 11 11 H 1.08999 * 113.61286 * 270.88236 * 10 9 7 12 12 O 1.42896 * 113.69126 * 139.99527 * 10 9 7 13 13 C 1.35896 * 117.00159 * 104.58171 * 12 10 9 14 14 C 1.38738 * 120.05459 * 173.77445 * 13 12 10 15 15 C 1.38144 * 119.94200 * 179.74352 * 14 13 12 16 16 C 1.38265 * 120.05430 * 0.51316 * 15 14 13 17 17 C 1.38260 * 120.11153 * 359.76917 * 16 15 14 18 18 C 1.38134 * 120.05946 * 359.97293 * 17 16 15 19 19 C 1.53779 * 87.08067 * 25.43204 * 10 9 7 20 20 C 1.47021 * 105.61600 * 180.02562 * 3 2 1 21 21 C 1.34177 * 105.95144 * 359.97438 * 20 3 2 22 22 C 1.50703 * 125.43429 * 179.97438 * 21 20 3 23 23 O 1.42898 * 109.47361 * 65.00193 * 22 21 20 24 24 Si 1.86307 * 109.46906 * 185.00406 * 22 21 20 25 25 O 1.33654 * 125.80066 * 180.33739 * 2 1 3 26 26 H 1.09000 * 109.47376 * 89.99541 * 1 2 3 27 27 H 1.09002 * 109.47185 * 209.99876 * 1 2 3 28 28 H 1.09002 * 109.46338 * 329.99490 * 1 2 3 29 29 H 0.97001 * 119.99888 * 0.02562 * 6 4 3 30 30 H 1.08996 * 113.61555 * 203.66661 * 9 7 6 31 31 H 1.08997 * 113.61055 * 334.56244 * 9 7 6 32 32 H 1.08004 * 120.02744 * 0.02562 * 14 13 12 33 33 H 1.08007 * 119.96976 * 180.23247 * 15 14 13 34 34 H 1.08003 * 119.93872 * 179.74196 * 16 15 14 35 35 H 1.08006 * 119.96856 * 179.97438 * 17 16 15 36 36 H 1.07998 * 120.03263 * 179.97438 * 18 17 16 37 37 H 1.08998 * 113.61408 * 220.02175 * 19 10 9 38 38 H 1.09001 * 113.61480 * 89.11194 * 19 10 9 39 39 H 1.08006 * 127.02355 * 180.02562 * 20 3 2 40 40 H 1.09001 * 109.47269 * 304.99860 * 22 21 20 41 41 H 0.96698 * 114.00043 * 59.99881 * 23 22 21 42 42 H 1.48493 * 109.99874 * 179.97438 * 24 22 21 43 43 H 1.48501 * 109.99861 * 301.31804 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8740 2.5157 0.0005 5 8 0.6890 2.7892 0.0015 6 7 2.7931 3.5015 -0.0001 7 6 2.3646 4.9025 0.0010 8 1 1.3616 5.0386 -0.4033 9 6 2.5912 5.6150 1.3448 10 6 3.9888 5.9873 0.8223 11 1 4.7516 5.2415 1.0461 12 8 4.3941 7.3147 1.1622 13 6 5.3113 7.4442 2.1565 14 6 5.8457 8.6902 2.4509 15 6 6.7741 8.8200 3.4657 16 6 7.1785 7.7078 4.1806 17 6 6.6518 6.4641 3.8853 18 6 5.7193 6.3298 2.8751 19 6 3.4051 5.8653 -0.5952 20 6 3.6849 0.5990 -0.0006 21 6 3.5858 -0.7391 -0.0004 22 6 4.7459 -1.7011 -0.0014 23 8 5.4772 -1.5668 1.2189 24 14 4.1067 -3.4444 -0.1538 25 8 2.2889 -1.0840 -0.0064 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5139 29 1 3.7383 3.2834 -0.0012 30 1 1.9392 6.4747 1.4986 31 1 2.6105 4.9389 2.1996 32 1 5.5329 9.5587 1.8902 33 1 7.1876 9.7904 3.6977 34 1 7.9075 7.8108 4.9708 35 1 6.9697 5.5968 4.4450 36 1 5.3084 5.3580 2.6445 37 1 4.0814 5.3913 -1.3066 38 1 2.9755 6.7935 -0.9719 39 1 4.5929 1.1840 -0.0004 40 1 5.4010 -1.4794 -0.8439 41 1 4.9555 -1.7497 2.0123 42 1 5.2410 -4.4028 -0.1565 43 1 3.1871 -3.7484 0.9719 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11987230_13308374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:06 Heat of formation + Delta-G solvation = -23.270420 kcal Electronic energy + Delta-G solvation = -27362.380228 eV Core-core repulsion = 23342.673530 eV Total energy + Delta-G solvation = -4019.706698 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.79544 -41.75144 -40.63290 -39.28446 -38.16173 -37.51042 -34.59970 -33.75409 -33.05147 -31.96053 -30.72131 -29.43265 -26.92436 -26.69328 -25.61670 -24.35990 -23.53284 -23.01369 -22.32460 -20.98320 -20.36412 -19.51278 -18.98157 -18.06953 -17.72890 -17.37338 -17.04151 -16.79756 -16.70822 -16.38734 -16.06218 -15.92671 -15.72055 -15.50290 -15.08488 -14.88675 -14.43920 -14.30325 -14.23706 -14.01819 -13.88183 -13.84371 -13.63121 -13.54952 -13.16300 -12.94830 -12.85285 -12.65432 -12.48591 -12.18700 -11.95125 -11.58076 -11.37754 -11.23596 -10.97712 -10.74473 -10.24564 -9.99388 -9.61540 -9.19253 -4.94641 0.19570 0.35052 0.44765 0.80170 1.16405 1.40618 1.69419 1.90754 2.01110 2.16985 2.20476 2.79845 3.16098 3.28533 3.34947 3.37059 3.63130 3.68877 3.72255 3.74978 3.89042 3.97491 4.09291 4.20965 4.28960 4.37549 4.44620 4.46035 4.52344 4.59231 4.61316 4.63828 4.67866 4.70310 4.73541 4.81225 4.84999 4.92461 5.04809 5.12965 5.19735 5.31640 5.42539 5.45355 5.57931 5.83200 5.86757 6.32267 6.39028 6.44395 7.08251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.088 3.912 3 C -0.269 4.269 4 C 0.594 3.406 5 O -0.570 6.570 6 N -0.697 5.697 7 C 0.126 3.874 8 H 0.104 0.896 9 C -0.165 4.165 10 C 0.053 3.947 11 H 0.111 0.889 12 O -0.314 6.314 13 C 0.111 3.889 14 C -0.172 4.172 15 C -0.086 4.086 16 C -0.168 4.168 17 C -0.089 4.089 18 C -0.218 4.218 19 C -0.124 4.124 20 C -0.145 4.145 21 C -0.058 4.058 22 C -0.031 4.031 23 O -0.534 6.534 24 Si 0.768 3.232 25 O -0.173 6.173 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.413 0.587 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.179 0.821 40 H 0.159 0.841 41 H 0.390 0.610 42 H -0.283 1.283 43 H -0.295 1.295 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -1.769 -1.698 3.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 C -0.274 4.274 4 C 0.384 3.616 5 O -0.450 6.450 6 N -0.348 5.348 7 C 0.020 3.980 8 H 0.122 0.878 9 C -0.204 4.204 10 C -0.003 4.003 11 H 0.129 0.871 12 O -0.228 6.228 13 C 0.066 3.934 14 C -0.190 4.190 15 C -0.104 4.104 16 C -0.186 4.186 17 C -0.107 4.107 18 C -0.236 4.236 19 C -0.162 4.162 20 C -0.164 4.164 21 C -0.106 4.106 22 C -0.141 4.141 23 O -0.342 6.342 24 Si 0.672 3.328 25 O -0.070 6.070 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.250 0.750 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.196 0.804 40 H 0.176 0.824 41 H 0.240 0.760 42 H -0.210 1.210 43 H -0.222 1.222 Dipole moment (debyes) X Y Z Total from point charges 1.924 -2.357 -1.867 3.569 hybrid contribution 0.516 0.380 1.401 1.541 sum 2.440 -1.976 -0.466 3.174 Atomic orbital electron populations 1.20722 0.82632 1.05387 1.05451 1.23227 0.94764 0.83004 0.95552 1.21149 0.94301 0.93254 1.18679 1.17339 0.85127 0.84339 0.74838 1.90770 1.17895 1.84456 1.51922 1.45355 1.10047 1.04636 1.74736 1.21532 0.99905 0.79737 0.96819 0.87792 1.23995 0.97110 1.01036 0.98218 1.24373 0.95645 0.82951 0.97339 0.87117 1.86142 1.55518 1.30569 1.50559 1.19267 0.90039 0.94891 0.89180 1.20732 1.00761 0.95927 1.01618 1.21311 0.95286 1.00095 0.93742 1.21426 1.02459 0.92742 1.01987 1.21294 0.94936 0.98556 0.95908 1.21450 1.03360 0.98464 1.00336 1.23543 0.97393 1.00198 0.95080 1.22800 0.96352 0.93609 1.03676 1.22831 0.82788 0.95975 1.08977 1.24496 0.91171 1.07287 0.91139 1.86640 1.40067 1.91531 1.15982 0.93540 0.78235 0.72170 0.88847 1.83690 1.16881 1.35024 1.71394 0.87889 0.88543 0.88550 0.74983 0.88236 0.90868 0.84869 0.83492 0.84130 0.84037 0.84358 0.88162 0.86954 0.80397 0.82362 0.76015 1.20972 1.22164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.04 9.89 71.24 0.70 0.74 16 2 C 0.09 0.22 7.37 25.26 0.19 0.40 16 3 C -0.27 -0.69 6.31 -18.99 -0.12 -0.81 16 4 C 0.59 2.75 7.81 86.65 0.68 3.42 16 5 O -0.57 -6.30 14.44 -4.08 -0.06 -6.36 16 6 N -0.70 0.96 5.26 -443.33 -2.33 -1.37 16 7 C 0.13 -0.13 4.33 45.52 0.20 0.07 16 8 H 0.10 0.24 7.46 -2.39 -0.02 0.22 16 9 C -0.16 0.05 7.71 31.12 0.24 0.29 16 10 C 0.05 -0.08 3.51 31.12 0.11 0.03 16 11 H 0.11 -0.48 6.04 -2.39 -0.01 -0.49 16 12 O -0.31 -1.35 10.15 -92.38 -0.94 -2.28 16 13 C 0.11 0.55 6.68 22.51 0.15 0.70 16 14 C -0.17 -0.73 9.99 22.37 0.22 -0.51 16 15 C -0.09 -0.15 10.04 22.25 0.22 0.07 16 16 C -0.17 -0.19 10.04 22.28 0.22 0.04 16 17 C -0.09 -0.11 10.04 22.25 0.22 0.11 16 18 C -0.22 -0.51 9.01 22.36 0.20 -0.31 16 19 C -0.12 0.48 7.66 31.12 0.24 0.72 16 20 C -0.15 0.23 10.48 23.65 0.25 0.48 16 21 C -0.06 0.07 6.18 24.76 0.15 0.23 16 22 C -0.03 0.13 2.97 71.24 0.21 0.34 16 23 O -0.53 1.01 12.88 -148.98 -1.92 -0.91 16 24 Si 0.77 -2.40 32.09 68.60 2.20 -0.20 16 25 O -0.17 -0.22 8.90 4.51 0.04 -0.18 16 26 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 28 H 0.10 0.28 6.48 -2.39 -0.02 0.27 16 29 H 0.41 -2.68 7.87 -92.71 -0.73 -3.41 16 30 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.07 0.05 8.14 -2.39 -0.02 0.04 16 32 H 0.13 0.33 8.06 -2.91 -0.02 0.31 16 33 H 0.15 -0.41 8.06 -2.91 -0.02 -0.43 16 34 H 0.14 -0.41 8.06 -2.91 -0.02 -0.43 16 35 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 36 H 0.14 -0.18 5.95 -2.91 -0.02 -0.20 16 37 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.18 -1.19 7.74 -2.91 -0.02 -1.21 16 40 H 0.16 -1.32 7.96 -2.39 -0.02 -1.34 16 41 H 0.39 -2.52 8.70 -74.06 -0.64 -3.16 16 42 H -0.28 -0.75 7.11 99.48 0.71 -0.05 16 43 H -0.29 -1.00 7.11 99.48 0.71 -0.30 16 Total: 0.00 -18.43 367.26 0.81 -17.63 By element: Atomic # 1 Polarization: -12.06 SS G_CDS: -0.28 Total: -12.34 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.09 Total: 6.02 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: -2.33 Total: -1.37 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -2.88 Total: -9.73 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.20 Total: -0.20 kcal Total: -18.43 0.81 -17.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11987230_13308374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.644 kcal (2) G-P(sol) polarization free energy of solvation -18.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds