Wall clock time and date at job start Tue Mar 9 2021 13:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38507 * 119.85072 * 2 1 4 4 C 1.38095 * 120.38717 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.95142 * 179.97438 * 4 3 2 6 6 O 1.42906 * 109.47363 * 104.99929 * 5 4 3 7 7 Si 1.86296 * 109.47337 * 344.99858 * 5 4 3 8 8 H 1.48499 * 109.47419 * 59.99960 * 7 5 4 9 9 H 1.48505 * 109.46971 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47150 * 300.00013 * 7 5 4 11 11 C 1.38658 * 120.08848 * 359.97438 * 4 3 2 12 12 O 1.35656 * 120.14878 * 179.97438 * 11 4 3 13 13 C 1.40172 * 119.70095 * 359.97438 * 11 4 3 14 14 C 1.47540 * 120.19451 * 180.02562 * 13 11 4 15 15 O 1.21589 * 119.99445 * 0.02562 * 14 13 11 16 16 N 1.34773 * 120.00225 * 180.02562 * 14 13 11 17 17 C 1.46501 * 119.99926 * 174.85764 * 16 14 13 18 18 C 1.50696 * 109.54485 * 62.01665 * 17 16 14 19 19 C 1.38344 * 119.92579 * 23.16404 * 18 17 16 20 20 C 1.38376 * 120.30645 * 179.97438 * 19 18 17 21 21 C 1.37927 * 120.15487 * 0.02562 * 20 19 18 22 22 C 1.39652 * 119.84098 * 359.97438 * 21 20 19 23 23 C 1.43205 * 120.14715 * 180.02562 * 22 21 20 24 24 N 9.29607 * 122.66062 * 345.86092 * 11 1 2 25 25 C 1.37964 * 119.92556 * 202.88871 * 18 17 16 26 26 C 1.53177 * 109.54306 * 301.74816 * 17 16 14 27 27 C 1.53090 * 109.16535 * 297.11621 * 26 17 16 28 28 O 1.42911 * 109.41442 * 302.39376 * 27 26 17 29 29 C 1.42902 * 114.10026 * 61.15650 * 28 27 26 30 30 C 1.53096 * 109.41316 * 298.84340 * 29 28 27 31 31 C 1.37828 * 119.84927 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47561 * 90.00260 * 1 2 3 33 33 H 1.08998 * 109.46968 * 210.00494 * 1 2 3 34 34 H 1.09001 * 109.47101 * 330.00077 * 1 2 3 35 35 H 1.08004 * 119.79910 * 359.71776 * 3 2 1 36 36 H 1.09007 * 109.46768 * 224.99584 * 5 4 3 37 37 H 0.96694 * 113.99799 * 300.00180 * 6 5 4 38 38 H 0.96695 * 113.99968 * 269.97492 * 12 11 4 39 39 H 0.97005 * 119.99973 * 354.85734 * 16 14 13 40 40 H 1.08001 * 119.84517 * 0.02562 * 19 18 17 41 41 H 1.08006 * 119.92298 * 180.02562 * 20 19 18 42 42 H 1.07994 * 120.07836 * 179.97438 * 21 20 19 43 43 H 1.08002 * 120.07904 * 0.02562 * 25 18 17 44 44 H 1.08999 * 109.52378 * 57.01818 * 26 17 16 45 45 H 1.09001 * 109.52122 * 177.21080 * 26 17 16 46 46 H 1.08997 * 109.48119 * 182.40833 * 27 26 17 47 47 H 1.08999 * 109.49381 * 62.37809 * 27 26 17 48 48 H 1.09000 * 109.47906 * 178.86318 * 29 28 27 49 49 H 1.08997 * 109.48737 * 58.83186 * 29 28 27 50 50 H 1.09002 * 109.52001 * 297.70564 * 30 29 28 51 51 H 1.08998 * 109.57203 * 177.54355 * 30 29 28 52 52 H 1.07998 * 120.04625 * 0.03069 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2013 0.0000 4 6 3.5773 1.2142 0.0005 5 6 4.3174 2.5270 -0.0001 6 8 4.8547 2.7716 1.3014 7 14 3.1448 3.9009 -0.4561 8 1 2.0389 3.9567 0.5334 9 1 3.8744 5.1944 -0.4572 10 1 2.5866 3.6468 -1.8085 11 6 4.2836 0.0211 0.0016 12 8 5.6402 0.0323 0.0016 13 6 3.5897 -1.1968 0.0027 14 6 4.3303 -2.4729 0.0044 15 8 5.5462 -2.4700 0.0054 16 7 3.6592 -3.6416 0.0049 17 6 4.3903 -4.9062 -0.1071 18 6 5.3136 -5.0610 1.0738 19 6 5.0499 -4.3817 2.2498 20 6 5.8921 -4.5185 3.3392 21 6 7.0016 -5.3339 3.2590 22 6 7.2738 -6.0227 2.0751 23 6 8.4236 -6.8715 1.9848 24 7 9.3369 -7.5433 1.9152 25 6 6.4167 -5.8844 0.9817 26 6 5.2072 -4.9127 -1.4028 27 6 4.2541 -4.8331 -2.5982 28 8 3.3374 -5.9283 -2.5487 29 6 2.5134 -5.9472 -1.3813 30 6 3.3967 -6.0716 -0.1370 31 6 2.1930 -1.1954 0.0005 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 1.6507 2.1333 -0.0046 36 1 5.1292 2.4860 -0.7264 37 1 4.1874 2.8206 1.9995 38 1 6.0334 0.0344 -0.8817 39 1 2.6920 -3.6455 0.0795 40 1 4.1823 -3.7422 2.3181 41 1 5.6802 -3.9856 4.2543 42 1 7.6583 -5.4395 4.1099 43 1 6.6192 -6.4174 0.0645 44 1 5.8786 -4.0541 -1.4145 45 1 5.7893 -5.8324 -1.4618 46 1 4.8274 -4.8805 -3.5240 47 1 3.7013 -3.8944 -2.5607 48 1 1.8329 -6.7972 -1.4304 49 1 1.9377 -5.0232 -1.3275 50 1 3.9423 -7.0147 -0.1704 51 1 2.7740 -6.0424 0.7572 52 1 1.6513 -2.1297 0.0005 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12057918_13422088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:31 Heat of formation + Delta-G solvation = -67.434479 kcal Electronic energy + Delta-G solvation = -38827.242848 eV Core-core repulsion = 34030.785743 eV Total energy + Delta-G solvation = -4796.457105 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 396.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.37643 -41.23612 -39.93155 -39.34136 -37.99128 -37.70930 -37.55143 -36.28657 -33.93659 -32.99531 -32.55172 -32.11926 -31.99646 -31.11220 -27.50723 -26.77044 -26.35909 -25.37634 -24.77056 -24.32185 -23.18390 -22.02873 -21.67667 -20.54389 -19.71956 -19.47301 -18.44416 -18.08387 -17.60788 -17.29182 -17.09240 -16.94060 -16.76866 -16.62357 -16.21439 -16.04843 -15.96116 -15.79144 -15.43955 -15.23574 -15.12780 -15.07766 -14.76530 -14.68760 -14.40846 -14.35572 -14.30483 -14.09189 -13.89036 -13.64454 -13.55671 -13.40237 -13.27176 -13.11424 -12.87171 -12.57737 -12.51410 -12.44948 -12.22847 -12.18434 -12.14012 -11.90878 -11.75806 -11.62949 -11.35707 -10.82364 -10.65711 -10.34034 -10.22204 -10.03507 -9.98084 -9.73463 -9.45704 -0.30585 -0.25118 0.12123 0.28924 1.13671 1.41773 1.50302 1.51363 1.77339 1.84285 1.89897 2.00993 2.61005 2.75670 2.80979 2.95405 3.22514 3.42681 3.44703 3.53867 3.64401 3.67089 3.71610 3.82274 3.90269 3.97122 4.05312 4.13599 4.15362 4.20435 4.23090 4.34390 4.41121 4.48152 4.51177 4.55193 4.63650 4.66526 4.68548 4.77602 4.80886 4.84767 4.89560 4.91431 4.99715 5.03551 5.06962 5.11025 5.18233 5.23094 5.25112 5.26992 5.35705 5.44496 5.56840 5.70041 5.79001 6.25864 6.33681 6.49536 6.70857 6.80112 7.22631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.095 4.095 3 C -0.091 4.091 4 C -0.159 4.159 5 C -0.078 4.078 6 O -0.551 6.551 7 Si 0.985 3.015 8 H -0.239 1.239 9 H -0.279 1.279 10 H -0.251 1.251 11 C 0.171 3.829 12 O -0.487 6.487 13 C -0.176 4.176 14 C 0.562 3.438 15 O -0.533 6.533 16 N -0.710 5.710 17 C 0.229 3.771 18 C -0.080 4.080 19 C -0.069 4.069 20 C -0.119 4.119 21 C -0.071 4.071 22 C -0.042 4.042 23 C 0.276 3.724 24 N -0.467 5.467 25 C -0.066 4.066 26 C -0.165 4.165 27 C 0.068 3.932 28 O -0.399 6.399 29 C 0.055 3.945 30 C -0.151 4.151 31 C -0.061 4.061 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.386 0.614 38 H 0.401 0.599 39 H 0.414 0.586 40 H 0.134 0.866 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.137 0.863 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.055 0.945 48 H 0.112 0.888 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.107 0.893 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.429 3.359 -0.274 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.096 4.096 3 C -0.109 4.109 4 C -0.160 4.160 5 C -0.188 4.188 6 O -0.358 6.358 7 Si 0.808 3.192 8 H -0.162 1.162 9 H -0.205 1.205 10 H -0.175 1.175 11 C 0.124 3.876 12 O -0.299 6.299 13 C -0.180 4.180 14 C 0.350 3.650 15 O -0.410 6.410 16 N -0.365 5.365 17 C 0.143 3.857 18 C -0.081 4.081 19 C -0.088 4.088 20 C -0.137 4.137 21 C -0.092 4.092 22 C -0.046 4.046 23 C -0.038 4.038 24 N -0.143 5.143 25 C -0.086 4.086 26 C -0.204 4.204 27 C -0.009 4.009 28 O -0.318 6.318 29 C -0.022 4.022 30 C -0.188 4.188 31 C -0.079 4.079 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.161 0.839 36 H 0.130 0.870 37 H 0.234 0.766 38 H 0.260 0.740 39 H 0.253 0.747 40 H 0.151 0.849 41 H 0.170 0.830 42 H 0.162 0.838 43 H 0.155 0.845 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.130 0.870 49 H 0.087 0.913 50 H 0.108 0.892 51 H 0.126 0.874 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.218 2.816 -0.503 11.577 hybrid contribution 0.000 0.143 0.172 0.224 sum -11.218 2.960 -0.331 11.606 Atomic orbital electron populations 1.20919 0.88406 1.04466 1.03732 1.20069 0.97892 0.91932 0.99659 1.21365 0.92572 0.99644 0.97318 1.20713 0.94412 0.95654 1.05222 1.25020 1.05401 0.99110 0.89232 1.86557 1.38140 1.94246 1.16818 0.85222 0.77046 0.75952 0.81018 1.16236 1.20456 1.17483 1.18447 0.83605 0.90577 0.94928 1.84777 1.15107 1.96020 1.33968 1.20424 0.94800 0.92727 1.10028 1.18115 0.87043 0.83705 0.76094 1.90843 1.14269 1.87452 1.48419 1.45918 1.11048 1.04058 1.75471 1.18997 0.91130 0.84132 0.91490 1.19817 0.95721 0.97067 0.95479 1.21314 0.99189 0.96373 0.91962 1.21322 0.94048 0.98332 0.99970 1.21386 0.97459 0.94307 0.96042 1.16003 0.91574 0.99722 0.97265 1.26032 0.92766 0.92520 0.92468 1.81296 1.12277 1.11756 1.08938 1.21055 0.92770 0.97579 0.97232 1.22646 0.99280 1.04211 0.94216 1.22512 0.90756 0.89500 0.98147 1.87973 1.52194 1.48811 1.42812 1.22812 0.92219 1.03723 0.83421 1.22541 0.98302 0.97068 1.00923 1.21411 0.91224 0.99561 0.95723 0.89875 0.89513 0.90708 0.83946 0.86958 0.76574 0.74001 0.74738 0.84856 0.83049 0.83840 0.84535 0.90163 0.89941 0.88859 0.92705 0.87036 0.91349 0.89198 0.87425 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.36 10.00 71.24 0.71 2.07 16 2 C -0.10 0.67 5.87 -19.90 -0.12 0.56 16 3 C -0.09 0.42 8.30 22.30 0.19 0.60 16 4 C -0.16 0.18 5.27 -19.80 -0.10 0.07 16 5 C -0.08 0.09 2.38 71.24 0.17 0.26 16 6 O -0.55 -1.21 12.88 -148.98 -1.92 -3.13 16 7 Si 0.98 -3.39 25.48 68.60 1.75 -1.64 16 8 H -0.24 1.32 6.73 99.48 0.67 1.99 16 9 H -0.28 -0.35 7.11 99.48 0.71 0.35 16 10 H -0.25 0.78 7.11 99.48 0.71 1.48 16 11 C 0.17 0.31 6.69 22.84 0.15 0.46 16 12 O -0.49 -2.60 10.91 -68.81 -0.75 -3.35 16 13 C -0.18 0.28 5.89 -20.01 -0.12 0.17 16 14 C 0.56 -0.18 6.20 86.70 0.54 0.35 16 15 O -0.53 -3.83 12.10 16.92 0.20 -3.62 16 16 N -0.71 4.74 3.20 -428.91 -1.37 3.37 16 17 C 0.23 -1.04 0.50 2.98 0.00 -1.03 16 18 C -0.08 0.09 3.75 -19.91 -0.07 0.01 16 19 C -0.07 0.10 8.38 22.33 0.19 0.29 16 20 C -0.12 0.18 10.03 22.23 0.22 0.40 16 21 C -0.07 -0.03 9.76 22.54 0.22 0.19 16 22 C -0.04 -0.14 5.73 -21.36 -0.12 -0.26 16 23 C 0.28 2.31 15.33 88.33 1.35 3.66 16 24 N -0.47 -6.52 18.54 19.00 0.35 -6.17 16 25 C -0.07 -0.08 8.86 22.54 0.20 0.12 16 26 C -0.17 0.19 4.29 30.68 0.13 0.32 16 27 C 0.07 -0.13 6.68 72.01 0.48 0.35 16 28 O -0.40 0.30 10.77 -148.98 -1.60 -1.30 16 29 C 0.05 -0.43 6.67 72.01 0.48 0.05 16 30 C -0.15 1.25 4.94 30.69 0.15 1.41 16 31 C -0.06 0.46 9.17 22.52 0.21 0.66 16 32 H 0.08 -1.02 8.14 -2.39 -0.02 -1.04 16 33 H 0.09 -1.21 8.08 -2.39 -0.02 -1.23 16 34 H 0.07 -0.86 8.08 -2.39 -0.02 -0.88 16 35 H 0.14 -1.07 4.86 -2.91 -0.01 -1.08 16 36 H 0.11 -0.16 7.83 -2.38 -0.02 -0.18 16 37 H 0.39 -1.87 8.70 -74.06 -0.64 -2.52 16 38 H 0.40 -0.26 9.06 -74.06 -0.67 -0.93 16 39 H 0.41 -5.24 5.64 -92.70 -0.52 -5.76 16 40 H 0.13 -0.52 6.87 -2.91 -0.02 -0.54 16 41 H 0.15 -0.84 8.06 -2.91 -0.02 -0.87 16 42 H 0.14 -0.34 8.06 -2.91 -0.02 -0.37 16 43 H 0.14 -0.04 6.33 -2.91 -0.02 -0.06 16 44 H 0.08 0.29 6.15 -2.39 -0.01 0.27 16 45 H 0.08 -0.07 6.39 -2.39 -0.02 -0.08 16 46 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.05 -0.17 7.75 -2.39 -0.02 -0.19 16 48 H 0.11 -1.09 8.14 -2.39 -0.02 -1.11 16 49 H 0.07 -0.80 7.14 -2.39 -0.02 -0.82 16 50 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 51 H 0.11 -1.32 8.14 -2.39 -0.02 -1.34 16 52 H 0.16 -2.33 6.42 -2.91 -0.02 -2.35 16 Total: 0.00 -24.59 415.64 1.42 -23.16 By element: Atomic # 1 Polarization: -17.94 SS G_CDS: -0.09 Total: -18.04 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 4.86 Total: 10.71 kcal Atomic # 7 Polarization: -1.77 SS G_CDS: -1.02 Total: -2.80 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -4.07 Total: -11.41 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: 1.75 Total: -1.64 kcal Total: -24.59 1.42 -23.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12057918_13422088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.271 kcal (2) G-P(sol) polarization free energy of solvation -24.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds