Wall clock time and date at job start Tue Mar 9 2021 13:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86300 * 109.47212 * 2 1 4 4 C 1.50697 * 109.47364 * 239.99526 * 2 1 3 5 5 C 1.38266 * 119.94750 * 300.00480 * 4 2 1 6 6 C 1.38142 * 120.05411 * 179.97438 * 5 4 2 7 7 C 1.38732 * 119.94891 * 0.02562 * 6 5 4 8 8 O 1.35896 * 120.05640 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99731 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46961 * 179.97438 * 9 8 7 11 11 O 1.21285 * 120.00007 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99945 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99797 * 179.72344 * 12 10 9 14 14 H 1.09003 * 112.85569 * 336.47151 * 13 12 10 15 15 C 1.53787 * 113.61438 * 107.77997 * 13 12 10 16 16 C 1.53779 * 87.08178 * 139.97931 * 15 13 12 17 17 H 1.09002 * 113.61416 * 89.11545 * 16 15 13 18 18 O 1.42896 * 113.61437 * 220.01526 * 16 15 13 19 19 C 1.35900 * 117.00499 * 254.18343 * 18 16 15 20 20 C 1.38735 * 120.05147 * 5.43089 * 19 18 16 21 21 C 1.38150 * 119.93781 * 179.74790 * 20 19 18 22 22 C 1.38264 * 120.05772 * 0.50806 * 21 20 19 23 23 C 1.38266 * 120.11340 * 359.76525 * 22 21 20 24 24 C 1.38149 * 120.05157 * 359.97438 * 23 22 21 25 25 C 1.53779 * 87.08147 * 334.56636 * 16 15 13 26 26 C 1.38732 * 119.88448 * 0.26742 * 7 6 5 27 27 C 1.38149 * 119.94510 * 359.43447 * 26 7 6 28 28 H 0.96703 * 113.99343 * 60.00373 * 1 2 3 29 29 H 1.09006 * 109.47081 * 120.00031 * 2 1 3 30 30 H 1.48505 * 110.00156 * 59.99710 * 3 2 1 31 31 H 1.48504 * 110.00085 * 181.31452 * 3 2 1 32 32 H 1.07995 * 119.96852 * 0.02562 * 5 4 2 33 33 H 1.07999 * 120.02565 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47256 * 59.99871 * 9 8 7 35 35 H 1.09003 * 109.46953 * 299.99492 * 9 8 7 36 36 H 0.96996 * 120.00266 * 359.97438 * 12 10 9 37 37 H 1.09005 * 113.61452 * 254.52837 * 15 13 12 38 38 H 1.08996 * 113.61309 * 25.42590 * 15 13 12 39 39 H 1.07994 * 120.02792 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.96461 * 180.27375 * 21 20 19 41 41 H 1.08000 * 119.94035 * 179.75012 * 22 21 20 42 42 H 1.07995 * 119.97566 * 180.02562 * 23 22 21 43 43 H 1.08004 * 120.02353 * 179.97438 * 24 23 22 44 44 H 1.08994 * 113.61489 * 270.88352 * 25 16 15 45 45 H 1.09001 * 113.68864 * 139.99300 * 25 16 15 46 46 H 1.08006 * 120.02836 * 179.72147 * 26 7 6 47 47 H 1.07998 * 119.97251 * 180.32213 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.5967 -2.0342 -1.4480 6 6 2.0556 -2.6875 -2.5754 7 6 2.8534 -2.0145 -3.4894 8 8 3.3055 -2.6549 -4.5994 9 6 4.1217 -1.8995 -5.4969 10 6 4.5263 -2.7682 -6.6599 11 8 4.1521 -3.9206 -6.7151 12 7 5.3031 -2.2643 -7.6393 13 6 5.7013 -3.1106 -8.7668 14 1 5.6757 -4.1738 -8.5280 15 6 4.9914 -2.7560 -10.0841 16 6 6.3385 -3.0001 -10.7845 17 1 6.4865 -4.0334 -11.0984 18 8 6.6244 -2.0578 -11.8200 19 6 6.5064 -2.4946 -13.1015 20 6 6.0157 -3.7663 -13.3597 21 6 5.8919 -4.2059 -14.6635 22 6 6.2662 -3.3837 -15.7101 23 6 6.7608 -2.1179 -15.4552 24 6 6.8816 -1.6716 -14.1534 25 6 7.0083 -2.6623 -9.4420 26 6 3.1928 -0.6881 -3.2656 27 6 2.7263 -0.0374 -2.1397 28 1 -0.3932 0.4417 -0.7651 29 1 1.7924 -0.5139 0.8900 30 1 1.5615 2.4680 1.2085 31 1 3.5347 1.7703 -0.0320 32 1 0.9753 -2.5576 -0.7365 33 1 1.7935 -3.7214 -2.7452 34 1 5.0137 -1.5546 -4.9739 35 1 3.5599 -1.0401 -5.8630 36 1 5.6014 -1.3424 -7.5958 37 1 4.2164 -3.4680 -10.3679 38 1 4.6548 -1.7205 -10.1337 39 1 5.7275 -4.4106 -12.5423 40 1 5.5058 -5.1942 -14.8651 41 1 6.1724 -3.7308 -16.7285 42 1 7.0522 -1.4774 -16.2744 43 1 7.2684 -0.6829 -13.9547 44 1 7.2231 -1.6011 -9.3161 45 1 7.8618 -3.2978 -9.2063 46 1 3.8175 -0.1632 -3.9733 47 1 2.9860 0.9967 -1.9677 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12060300_2989410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:40 Heat of formation + Delta-G solvation = -45.306142 kcal Electronic energy + Delta-G solvation = -29227.335829 eV Core-core repulsion = 24922.909830 eV Total energy + Delta-G solvation = -4304.425998 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.150 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.79912 -41.38952 -40.62244 -39.48521 -38.86096 -37.47193 -37.08978 -34.48789 -32.39323 -31.94538 -31.72355 -30.74617 -29.68516 -26.89435 -26.38442 -25.78430 -24.08269 -23.56849 -23.00871 -22.31817 -21.74853 -20.87762 -19.60114 -19.42652 -18.40415 -18.09440 -17.62334 -17.45036 -16.94842 -16.79686 -16.62147 -16.45785 -16.24847 -15.95516 -15.83166 -15.55840 -15.43891 -15.15350 -14.95235 -14.64329 -14.37211 -14.32552 -14.11216 -13.76638 -13.67763 -13.57375 -13.52446 -13.39462 -12.76882 -12.62555 -12.39763 -12.32824 -12.23947 -12.07428 -12.05481 -11.73999 -11.66316 -11.41400 -11.02365 -10.40620 -10.23035 -10.04729 -9.97645 -9.22855 -9.17668 -4.98517 0.27116 0.30459 0.36709 0.46344 1.34617 1.38301 1.42076 1.64770 1.99210 2.18445 2.64374 2.65603 2.81586 3.28112 3.36212 3.51571 3.56901 3.65993 3.69766 3.74169 3.82788 3.89335 3.95453 3.97783 4.03274 4.09289 4.18179 4.30555 4.31041 4.42242 4.47755 4.50661 4.52055 4.56719 4.63242 4.66684 4.73895 4.80511 4.88137 4.96538 4.96923 5.06660 5.15336 5.25015 5.32796 5.38845 5.47069 5.49652 5.59787 5.69244 5.84235 6.24671 6.42334 6.45219 6.79719 7.07446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.074 4.074 3 Si 0.782 3.218 4 C -0.161 4.161 5 C -0.061 4.061 6 C -0.166 4.166 7 C 0.121 3.879 8 O -0.320 6.320 9 C 0.036 3.964 10 C 0.515 3.485 11 O -0.571 6.571 12 N -0.697 5.697 13 C 0.127 3.873 14 H 0.107 0.893 15 C -0.164 4.164 16 C 0.051 3.949 17 H 0.110 0.890 18 O -0.309 6.309 19 C 0.112 3.888 20 C -0.220 4.220 21 C -0.090 4.090 22 C -0.168 4.168 23 C -0.087 4.087 24 C -0.170 4.170 25 C -0.123 4.123 26 C -0.199 4.199 27 C -0.076 4.076 28 H 0.395 0.605 29 H 0.102 0.898 30 H -0.304 1.304 31 H -0.281 1.281 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.423 0.577 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.136 0.864 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.166 0.834 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 6.088 -3.853 7.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.183 4.183 3 Si 0.688 3.312 4 C -0.162 4.162 5 C -0.079 4.079 6 C -0.185 4.185 7 C 0.075 3.925 8 O -0.233 6.233 9 C -0.042 4.042 10 C 0.301 3.699 11 O -0.450 6.450 12 N -0.351 5.351 13 C 0.022 3.978 14 H 0.125 0.875 15 C -0.203 4.203 16 C -0.005 4.005 17 H 0.128 0.872 18 O -0.223 6.223 19 C 0.067 3.933 20 C -0.238 4.238 21 C -0.108 4.108 22 C -0.186 4.186 23 C -0.105 4.105 24 C -0.188 4.188 25 C -0.161 4.161 26 C -0.218 4.218 27 C -0.094 4.094 28 H 0.245 0.755 29 H 0.120 0.880 30 H -0.232 1.232 31 H -0.207 1.207 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.262 0.738 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.154 0.846 44 H 0.132 0.868 45 H 0.116 0.884 46 H 0.183 0.817 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.197 5.533 -2.909 7.021 hybrid contribution 0.020 -0.730 0.271 0.779 sum 3.218 4.803 -2.638 6.354 Atomic orbital electron populations 1.86466 1.17513 1.82223 1.50492 1.25193 0.85140 1.11061 0.96955 0.93747 0.77747 0.74898 0.84769 1.20362 1.02061 0.95300 0.98443 1.20894 0.97204 0.94064 0.95754 1.20616 1.01547 1.01261 0.95074 1.19204 0.94676 0.92039 0.86546 1.86127 1.65167 1.40352 1.31684 1.22762 0.97803 0.94269 0.89360 1.20596 0.78045 0.87543 0.83675 1.90768 1.55316 1.20270 1.78611 1.45566 1.51359 1.16453 1.21683 1.22082 0.95404 0.96420 0.83931 0.87488 1.24028 0.97268 1.03855 0.95188 1.23977 0.97038 0.93877 0.85651 0.87204 1.86118 1.84108 1.39806 1.12295 1.19236 0.96113 0.93435 0.84486 1.21490 1.07024 0.96368 0.98963 1.21300 0.97167 1.00410 0.91942 1.21425 1.02046 0.94912 1.00244 1.21315 0.96738 0.96298 0.96100 1.20723 1.05670 1.01146 0.91309 1.23545 0.96984 1.04825 0.90754 1.21511 1.05669 0.93280 1.01299 1.21074 0.95424 1.00060 0.92797 0.75526 0.88012 1.23228 1.20747 0.84995 0.85622 0.85550 0.85364 0.73833 0.90906 0.88094 0.84368 0.84176 0.84197 0.83440 0.84625 0.86780 0.88445 0.81679 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.27 12.77 -148.98 -1.90 -2.18 16 2 C -0.07 0.05 2.82 71.24 0.20 0.25 16 3 Si 0.78 -2.75 29.78 68.60 2.04 -0.71 16 4 C -0.16 0.02 5.39 -19.85 -0.11 -0.09 16 5 C -0.06 -0.16 9.60 22.25 0.21 0.05 16 6 C -0.17 -0.76 9.99 22.37 0.22 -0.53 16 7 C 0.12 0.33 6.69 22.51 0.15 0.48 16 8 O -0.32 -1.60 9.67 -73.34 -0.71 -2.31 16 9 C 0.04 -0.16 5.22 71.24 0.37 0.21 16 10 C 0.51 0.61 7.91 87.66 0.69 1.30 16 11 O -0.57 -7.39 16.10 15.99 0.26 -7.14 16 12 N -0.70 4.04 5.35 -440.02 -2.36 1.68 16 13 C 0.13 -0.46 4.24 45.52 0.19 -0.27 16 14 H 0.11 0.04 7.46 -2.39 -0.02 0.02 16 15 C -0.16 0.45 7.71 31.12 0.24 0.69 16 16 C 0.05 -0.13 3.69 31.12 0.11 -0.02 16 17 H 0.11 -0.41 5.95 -2.39 -0.01 -0.42 16 18 O -0.31 -0.72 10.15 -92.42 -0.94 -1.66 16 19 C 0.11 0.43 6.68 22.51 0.15 0.58 16 20 C -0.22 -0.48 9.02 22.37 0.20 -0.28 16 21 C -0.09 -0.11 10.04 22.25 0.22 0.12 16 22 C -0.17 -0.12 10.04 22.28 0.22 0.10 16 23 C -0.09 -0.07 10.04 22.26 0.22 0.15 16 24 C -0.17 -0.50 9.99 22.37 0.22 -0.27 16 25 C -0.12 0.80 7.66 31.12 0.24 1.04 16 26 C -0.20 0.67 9.04 22.37 0.20 0.87 16 27 C -0.08 0.26 8.66 22.26 0.19 0.45 16 28 H 0.39 -3.03 8.70 -74.06 -0.64 -3.67 16 29 H 0.10 0.10 7.96 -2.38 -0.02 0.08 16 30 H -0.30 -1.43 7.11 99.48 0.71 -0.72 16 31 H -0.28 -0.06 7.11 99.48 0.71 0.65 16 32 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 33 H 0.13 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.13 -1.39 7.65 -2.39 -0.02 -1.41 16 35 H 0.13 -1.44 7.67 -2.39 -0.02 -1.46 16 36 H 0.42 -5.60 8.73 -92.71 -0.81 -6.41 16 37 H 0.07 -0.06 8.14 -2.38 -0.02 -0.08 16 38 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.14 -0.14 5.91 -2.91 -0.02 -0.15 16 40 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 41 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 42 H 0.15 -0.55 8.06 -2.91 -0.02 -0.58 16 43 H 0.14 0.09 8.06 -2.91 -0.02 0.06 16 44 H 0.11 -1.00 8.12 -2.39 -0.02 -1.02 16 45 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 46 H 0.17 -1.80 6.30 -2.91 -0.02 -1.82 16 47 H 0.15 -1.31 4.87 -2.91 -0.01 -1.32 16 Total: 0.00 -26.98 394.56 0.17 -26.80 By element: Atomic # 1 Polarization: -18.93 SS G_CDS: -0.40 Total: -19.33 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 4.17 Total: 4.83 kcal Atomic # 7 Polarization: 4.04 SS G_CDS: -2.36 Total: 1.68 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -3.29 Total: -13.28 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.04 Total: -0.71 kcal Total: -26.98 0.17 -26.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12060300_2989410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.504 kcal (2) G-P(sol) polarization free energy of solvation -26.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds