Wall clock time and date at job start Tue Mar 9 2021 13:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86301 * 109.46756 * 2 1 4 4 C 1.50705 * 109.46975 * 240.00530 * 2 1 3 5 5 C 1.38247 * 119.97330 * 120.00081 * 4 2 1 6 6 C 1.38286 * 120.10909 * 180.02562 * 5 4 2 7 7 C 1.38118 * 120.05637 * 359.95130 * 6 5 4 8 8 C 1.38757 * 119.94916 * 0.02562 * 7 6 5 9 9 O 1.35897 * 120.06058 * 180.02562 * 8 7 6 10 10 C 1.42900 * 116.99772 * 0.02562 * 9 8 7 11 11 C 1.53006 * 109.46971 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47034 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99874 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99912 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00269 * 180.02562 * 14 12 11 16 16 H 1.09000 * 112.84352 * 23.80146 * 15 14 12 17 17 C 1.53773 * 113.61730 * 155.00170 * 15 14 12 18 18 C 1.53785 * 87.08210 * 140.06450 * 17 15 14 19 19 H 1.09000 * 113.61133 * 89.19982 * 18 17 15 20 20 O 1.42896 * 113.61649 * 220.01721 * 18 17 15 21 21 C 1.35896 * 117.00384 * 203.31882 * 20 18 17 22 22 C 1.38738 * 120.05346 * 354.30322 * 21 20 18 23 23 C 1.38142 * 119.94553 * 179.97438 * 22 21 20 24 24 C 1.38271 * 120.05341 * 0.25260 * 23 22 21 25 25 C 1.38261 * 120.11003 * 359.49087 * 24 23 22 26 26 C 1.38144 * 120.06035 * 0.51148 * 25 24 23 27 27 C 1.53787 * 87.17285 * 334.61205 * 18 17 15 28 28 C 1.38162 * 119.96774 * 300.24501 * 4 2 1 29 29 H 0.96700 * 114.00589 * 60.00249 * 1 2 3 30 30 H 1.08993 * 109.47642 * 119.99723 * 2 1 3 31 31 H 1.48505 * 110.00211 * 298.68215 * 3 2 1 32 32 H 1.48502 * 110.00239 * 59.99921 * 3 2 1 33 33 H 1.07996 * 119.94113 * 359.97438 * 5 4 2 34 34 H 1.08000 * 119.97033 * 179.97438 * 6 5 4 35 35 H 1.08004 * 120.02975 * 180.02562 * 7 6 5 36 36 H 1.08991 * 109.47507 * 59.99802 * 10 9 8 37 37 H 1.09009 * 109.46773 * 299.99634 * 10 9 8 38 38 H 1.08998 * 109.46818 * 59.99790 * 11 10 9 39 39 H 1.09001 * 109.46546 * 299.99712 * 11 10 9 40 40 H 0.97000 * 119.99892 * 0.02562 * 14 12 11 41 41 H 1.09003 * 113.61454 * 25.51886 * 17 15 14 42 42 H 1.08997 * 113.69156 * 254.62724 * 17 15 14 43 43 H 1.08002 * 120.02410 * 359.95130 * 22 21 20 44 44 H 1.07992 * 119.97385 * 179.97438 * 23 22 21 45 45 H 1.07996 * 119.93994 * 179.72540 * 24 23 22 46 46 H 1.08002 * 119.97444 * 180.25837 * 25 24 23 47 47 H 1.07998 * 120.03011 * 179.72767 * 26 25 24 48 48 H 1.08999 * 113.61562 * 139.93856 * 27 18 17 49 49 H 1.09001 * 113.60754 * 270.83986 * 27 18 17 50 50 H 1.07999 * 120.03430 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7261 -0.0379 -2.1402 6 6 3.1881 -0.6868 -3.2706 7 6 2.8572 -2.0091 -3.4930 8 6 2.0601 -2.6865 -2.5813 9 8 1.7336 -3.9878 -2.7976 10 6 2.2463 -4.5966 -3.9844 11 6 1.7771 -6.0513 -4.0550 12 6 2.3173 -6.6932 -5.3069 13 8 3.0097 -6.0506 -6.0675 14 7 2.0317 -7.9815 -5.5807 15 6 2.5573 -8.6058 -6.7974 16 1 3.4554 -8.1141 -7.1712 17 6 2.6877 -10.1347 -6.6984 18 6 2.1803 -10.1932 -8.1490 19 1 2.9757 -10.1371 -8.8922 20 8 1.2671 -11.2647 -8.3933 21 6 1.1497 -11.6949 -9.6770 22 6 1.8067 -11.0230 -10.6977 23 6 1.6863 -11.4625 -12.0018 24 6 0.9075 -12.5679 -12.2909 25 6 0.2560 -13.2423 -11.2748 26 6 0.3732 -12.8068 -9.9691 27 6 1.4908 -8.8448 -7.8817 28 6 1.5929 -2.0316 -1.4512 29 1 -0.3934 0.4416 -0.7650 30 1 1.7924 -0.5137 0.8899 31 1 1.5877 2.4586 -1.2242 32 1 1.5613 2.4680 1.2085 33 1 2.9858 0.9962 -1.9680 34 1 3.8085 -0.1592 -3.9799 35 1 3.2187 -2.5157 -4.3757 36 1 3.3356 -4.5671 -3.9665 37 1 1.8824 -4.0544 -4.8573 38 1 0.6877 -6.0811 -4.0727 39 1 2.1413 -6.5931 -3.1821 40 1 1.4782 -8.4955 -4.9721 41 1 2.0045 -10.5855 -5.9784 42 1 3.7148 -10.4800 -6.5807 43 1 2.4115 -10.1569 -10.4729 44 1 2.1971 -10.9397 -12.7967 45 1 0.8111 -12.9072 -13.3116 46 1 -0.3483 -14.1079 -11.5026 47 1 -0.1394 -13.3313 -9.1763 48 1 1.5536 -8.1489 -8.7183 49 1 0.4799 -8.9424 -7.4859 50 1 0.9684 -2.5552 -0.7426 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12060300_4549614.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:47 Heat of formation + Delta-G solvation = -53.849706 kcal Electronic energy + Delta-G solvation = -30914.501006 eV Core-core repulsion = 26454.166912 eV Total energy + Delta-G solvation = -4460.334094 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.74119 -41.34371 -40.75615 -39.47164 -39.07838 -37.51445 -37.36650 -34.46791 -33.15834 -32.48756 -31.95073 -30.88096 -30.66571 -27.18922 -26.90684 -26.46990 -24.96835 -23.68995 -23.57500 -22.93041 -22.05600 -21.56567 -20.79387 -19.52278 -19.38583 -18.22263 -17.86101 -17.55713 -17.51106 -17.14129 -16.91649 -16.79035 -16.47808 -16.46672 -16.26150 -16.06775 -15.71234 -15.50910 -15.19976 -14.93021 -14.74481 -14.46797 -14.38391 -14.18238 -14.12776 -14.00832 -13.59139 -13.53996 -13.23985 -12.96476 -12.89764 -12.72693 -12.62908 -12.43421 -12.34626 -12.33403 -12.00200 -11.82967 -11.69304 -11.58609 -11.42216 -11.07734 -10.68698 -10.18879 -9.98933 -9.94609 -9.28657 -9.18971 -4.90414 0.18605 0.35480 0.38110 0.45030 1.29434 1.45143 1.61912 1.63883 1.95964 2.15822 2.56824 2.64966 2.80343 3.28855 3.35813 3.40068 3.53182 3.63173 3.65564 3.68967 3.83303 3.87666 3.88437 3.94403 3.97399 4.08560 4.17561 4.22677 4.26964 4.29841 4.38396 4.46725 4.52207 4.54978 4.55380 4.61737 4.62362 4.65577 4.72506 4.75011 4.80152 4.86880 4.97167 4.98928 5.05553 5.24878 5.32618 5.36928 5.40937 5.42806 5.45854 5.58483 5.69191 5.83223 6.31287 6.40305 6.44146 6.46451 7.09259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.087 4.087 3 Si 0.775 3.225 4 C -0.082 4.082 5 C -0.157 4.157 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.117 3.883 9 O -0.325 6.325 10 C 0.074 3.926 11 C -0.134 4.134 12 C 0.523 3.477 13 O -0.581 6.581 14 N -0.703 5.703 15 C 0.127 3.873 16 H 0.111 0.889 17 C -0.126 4.126 18 C 0.051 3.949 19 H 0.112 0.888 20 O -0.312 6.312 21 C 0.111 3.889 22 C -0.219 4.219 23 C -0.089 4.089 24 C -0.168 4.168 25 C -0.087 4.087 26 C -0.171 4.171 27 C -0.165 4.165 28 C -0.142 4.142 29 H 0.386 0.614 30 H 0.126 0.874 31 H -0.282 1.282 32 H -0.302 1.302 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.137 0.863 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.420 0.580 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.148 0.852 47 H 0.134 0.866 48 H 0.074 0.926 49 H 0.096 0.904 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 -2.238 -0.939 3.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.195 4.195 3 Si 0.680 3.320 4 C -0.082 4.082 5 C -0.174 4.174 6 C -0.093 4.093 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.239 6.239 10 C -0.002 4.002 11 C -0.173 4.173 12 C 0.311 3.689 13 O -0.460 6.460 14 N -0.355 5.355 15 C 0.022 3.978 16 H 0.129 0.871 17 C -0.163 4.163 18 C -0.005 4.005 19 H 0.130 0.870 20 O -0.225 6.225 21 C 0.066 3.934 22 C -0.238 4.238 23 C -0.107 4.107 24 C -0.186 4.186 25 C -0.104 4.104 26 C -0.190 4.190 27 C -0.204 4.204 28 C -0.160 4.160 29 H 0.235 0.765 30 H 0.144 0.856 31 H -0.208 1.208 32 H -0.230 1.230 33 H 0.166 0.834 34 H 0.171 0.829 35 H 0.155 0.845 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.258 0.742 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.157 0.843 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.165 0.835 47 H 0.152 0.848 48 H 0.093 0.907 49 H 0.114 0.886 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.452 -1.492 -0.632 2.939 hybrid contribution -1.277 -0.358 -0.666 1.484 sum 1.175 -1.851 -1.298 2.548 Atomic orbital electron populations 1.86569 1.18472 1.80470 1.50135 1.25351 0.83503 1.12259 0.98383 0.93913 0.90299 0.71354 0.76413 1.20169 0.97650 0.93504 0.96884 1.21175 1.00284 1.00862 0.95099 1.21247 0.97617 0.93395 0.97053 1.21556 1.03157 0.97096 1.01141 1.19144 0.95269 0.83489 0.94954 1.85952 1.71438 1.22795 1.43726 1.22446 0.99066 0.93137 0.85501 1.21447 1.04855 0.94050 0.96991 1.20627 0.79257 0.82120 0.86915 1.90735 1.40124 1.63586 1.51600 1.45755 1.53218 1.11626 1.24918 1.22109 0.97531 0.92977 0.85232 0.87072 1.23541 1.03797 0.93985 0.95023 1.24005 0.92271 0.85322 0.98918 0.87036 1.86122 1.60772 1.51333 1.24318 1.19251 0.96207 0.94160 0.83734 1.21493 1.05285 1.03404 0.93608 1.21306 0.97160 0.96118 0.96155 1.21428 0.99516 0.97162 1.00486 1.21310 0.98019 0.99615 0.91505 1.20723 1.02905 0.97086 0.98278 1.24050 1.00360 0.96275 0.99727 1.20321 1.03714 0.94684 0.97322 0.76457 0.85650 1.20796 1.23039 0.83449 0.82935 0.84532 0.91417 0.91783 0.85754 0.85382 0.74232 0.87267 0.88384 0.84264 0.84043 0.84139 0.83473 0.84774 0.90691 0.88585 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.09 12.76 -148.98 -1.90 -3.99 16 2 C -0.09 -0.04 2.82 71.24 0.20 0.16 16 3 Si 0.78 -1.37 29.79 68.60 2.04 0.67 16 4 C -0.08 -0.16 5.39 -19.88 -0.11 -0.27 16 5 C -0.16 0.04 8.67 22.28 0.19 0.24 16 6 C -0.08 -0.01 10.04 22.25 0.22 0.22 16 7 C -0.21 -0.61 9.04 22.37 0.20 -0.41 16 8 C 0.12 0.61 6.69 22.51 0.15 0.76 16 9 O -0.32 -1.46 10.14 -92.39 -0.94 -2.40 16 10 C 0.07 0.08 4.03 71.98 0.29 0.37 16 11 C -0.13 0.58 6.07 29.85 0.18 0.76 16 12 C 0.52 -0.10 7.83 87.66 0.69 0.59 16 13 O -0.58 -4.89 15.58 -3.03 -0.05 -4.94 16 14 N -0.70 3.50 5.36 -439.77 -2.36 1.14 16 15 C 0.13 -0.44 4.24 45.57 0.19 -0.25 16 16 H 0.11 -0.07 7.46 -2.39 -0.02 -0.09 16 17 C -0.13 0.71 7.67 31.12 0.24 0.94 16 18 C 0.05 -0.11 3.67 31.12 0.11 0.01 16 19 H 0.11 -0.41 5.96 -2.39 -0.01 -0.42 16 20 O -0.31 -1.01 10.15 -92.38 -0.94 -1.95 16 21 C 0.11 0.49 6.68 22.51 0.15 0.64 16 22 C -0.22 -0.51 9.01 22.37 0.20 -0.31 16 23 C -0.09 -0.11 10.04 22.25 0.22 0.12 16 24 C -0.17 -0.15 10.04 22.28 0.22 0.07 16 25 C -0.09 -0.11 10.04 22.25 0.22 0.11 16 26 C -0.17 -0.62 9.99 22.37 0.22 -0.40 16 27 C -0.17 0.37 7.73 31.18 0.24 0.61 16 28 C -0.14 -0.70 9.55 22.37 0.21 -0.49 16 29 H 0.39 -0.68 8.70 -74.06 -0.64 -1.32 16 30 H 0.13 -0.12 7.96 -2.39 -0.02 -0.14 16 31 H -0.28 -0.51 7.11 99.48 0.71 0.19 16 32 H -0.30 -1.76 7.11 99.48 0.71 -1.05 16 33 H 0.15 -0.70 4.87 -2.91 -0.01 -0.72 16 34 H 0.15 -0.74 8.06 -2.91 -0.02 -0.76 16 35 H 0.14 0.18 6.30 -2.91 -0.02 0.16 16 36 H 0.07 0.13 7.62 -2.39 -0.02 0.11 16 37 H 0.06 0.15 7.62 -2.38 -0.02 0.14 16 38 H 0.12 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 40 H 0.42 -4.45 8.73 -92.71 -0.81 -5.26 16 41 H 0.11 -0.76 8.12 -2.39 -0.02 -0.78 16 42 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 43 H 0.14 -0.15 5.92 -2.91 -0.02 -0.17 16 44 H 0.14 -0.42 8.06 -2.91 -0.02 -0.45 16 45 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 46 H 0.15 -0.48 8.06 -2.91 -0.02 -0.50 16 47 H 0.13 0.22 8.06 -2.91 -0.02 0.19 16 48 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 49 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 50 H 0.13 0.69 8.06 -2.91 -0.02 0.67 16 Total: 0.00 -21.31 415.54 -0.30 -21.61 By element: Atomic # 1 Polarization: -13.19 SS G_CDS: -0.43 Total: -13.63 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 4.27 Total: 3.47 kcal Atomic # 7 Polarization: 3.50 SS G_CDS: -2.36 Total: 1.14 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -3.82 Total: -13.27 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: 2.04 Total: 0.67 kcal Total: -21.31 -0.30 -21.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12060300_4549614.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.235 kcal (2) G-P(sol) polarization free energy of solvation -21.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds