Wall clock time and date at job start Tue Mar 9 2021 13:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86297 * 109.47292 * 2 1 4 4 C 1.50702 * 109.47233 * 239.99763 * 2 1 3 5 5 C 1.38248 * 119.97218 * 120.00473 * 4 2 1 6 6 C 1.38280 * 120.11130 * 180.02562 * 5 4 2 7 7 C 1.38131 * 120.05771 * 359.97438 * 6 5 4 8 8 C 1.38754 * 119.93930 * 359.97332 * 7 6 5 9 9 O 1.35901 * 120.04926 * 180.02562 * 8 7 6 10 10 C 1.42897 * 117.00213 * 0.02562 * 9 8 7 11 11 C 1.53001 * 109.46954 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47252 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47720 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99495 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00456 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00129 * 180.02562 * 15 13 12 17 17 H 1.09005 * 112.84712 * 334.65977 * 16 15 13 18 18 C 1.53781 * 113.61767 * 105.85786 * 16 15 13 19 19 C 1.53960 * 87.01650 * 139.95031 * 18 16 15 20 20 H 1.08998 * 113.61026 * 89.20340 * 19 18 16 21 21 O 1.42899 * 113.66349 * 220.06713 * 19 18 16 22 22 C 1.35908 * 117.00021 * 254.24662 * 21 19 18 23 23 C 1.38731 * 120.05197 * 5.43761 * 22 21 19 24 24 C 1.38151 * 119.94057 * 179.74407 * 23 22 21 25 25 C 1.38267 * 120.05445 * 0.50570 * 24 23 22 26 26 C 1.38269 * 120.11326 * 359.77099 * 25 24 23 27 27 C 1.38149 * 120.05046 * 359.97438 * 26 25 24 28 28 C 1.53774 * 87.11465 * 334.63937 * 19 18 16 29 29 C 1.38162 * 119.97145 * 300.25330 * 4 2 1 30 30 H 0.96703 * 114.00037 * 60.00028 * 1 2 3 31 31 H 1.09001 * 109.47133 * 120.00003 * 2 1 3 32 32 H 1.48503 * 109.99983 * 298.67835 * 3 2 1 33 33 H 1.48501 * 110.00182 * 59.99620 * 3 2 1 34 34 H 1.08001 * 119.94095 * 359.97438 * 5 4 2 35 35 H 1.07999 * 119.97556 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.02676 * 179.97438 * 7 6 5 37 37 H 1.09004 * 109.47073 * 299.99285 * 10 9 8 38 38 H 1.08997 * 109.47653 * 60.00226 * 10 9 8 39 39 H 1.08995 * 109.47280 * 299.99517 * 11 10 9 40 40 H 1.09001 * 109.47581 * 59.99866 * 11 10 9 41 41 H 1.09007 * 109.46930 * 299.99710 * 12 11 10 42 42 H 1.09004 * 109.47428 * 59.99523 * 12 11 10 43 43 H 0.97001 * 120.00028 * 359.97438 * 15 13 12 44 44 H 1.08993 * 113.61634 * 254.52966 * 18 16 15 45 45 H 1.09001 * 113.61124 * 25.43487 * 18 16 15 46 46 H 1.07997 * 120.03446 * 359.97438 * 23 22 21 47 47 H 1.07992 * 119.97215 * 180.22805 * 24 23 22 48 48 H 1.08002 * 119.94674 * 179.74240 * 25 24 23 49 49 H 1.07992 * 119.97305 * 179.97438 * 26 25 24 50 50 H 1.08008 * 120.02224 * 179.97438 * 27 26 25 51 51 H 1.09002 * 113.61512 * 270.81698 * 28 19 18 52 52 H 1.08995 * 113.69094 * 139.91918 * 28 19 18 53 53 H 1.08003 * 120.03221 * 0.02562 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7262 -0.0381 -2.1400 6 6 3.1883 -0.6870 -3.2703 7 6 2.8570 -2.0094 -3.4929 8 6 2.0603 -2.6867 -2.5809 9 8 1.7334 -3.9880 -2.7975 10 6 2.2453 -4.5966 -3.9847 11 6 1.7747 -6.0507 -4.0560 12 6 2.3222 -6.7022 -5.3275 13 6 1.8593 -8.1346 -5.3975 14 8 1.1607 -8.5897 -4.5168 15 7 2.2225 -8.9102 -6.4381 16 6 1.7720 -10.3025 -6.5064 17 1 1.5492 -10.7238 -5.5261 18 6 0.6641 -10.5413 -7.5458 19 6 1.3834 -11.8579 -7.8914 20 1 1.0539 -12.7060 -7.2912 21 8 1.4114 -12.1460 -9.2908 22 6 0.5803 -13.1249 -9.7360 23 6 -0.3249 -13.7162 -8.8668 24 6 -1.1723 -14.7074 -9.3230 25 6 -1.1115 -15.1173 -10.6421 26 6 -0.2062 -14.5335 -11.5090 27 6 0.6397 -13.5384 -11.0588 28 6 2.6724 -11.1996 -7.3721 29 6 1.5929 -2.0317 -1.4511 30 1 -0.3933 0.4417 -0.7651 31 1 1.7923 -0.5138 0.8900 32 1 1.5879 2.4585 -1.2243 33 1 1.5615 2.4679 1.2084 34 1 2.9860 0.9960 -1.9679 35 1 3.8088 -0.1596 -3.9796 36 1 3.2179 -2.5157 -4.3760 37 1 1.8810 -4.0541 -4.8572 38 1 3.3347 -4.5673 -3.9674 39 1 2.1386 -6.5935 -3.1837 40 1 0.6852 -6.0796 -4.0736 41 1 1.9579 -6.1592 -6.1997 42 1 3.4117 -6.6732 -5.3104 43 1 2.7816 -8.5463 -7.1424 44 1 -0.3231 -10.6842 -7.1067 45 1 0.6656 -9.8164 -8.3598 46 1 -0.3698 -13.3995 -7.8353 47 1 -1.8797 -15.1654 -8.6477 48 1 -1.7719 -15.8952 -10.9959 49 1 -0.1603 -14.8558 -12.5387 50 1 1.3470 -13.0829 -11.7362 51 1 3.2239 -10.6548 -8.1385 52 1 3.3050 -11.8721 -6.7929 53 1 0.9683 -2.5553 -0.7425 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12060300_4549616.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:50 Heat of formation + Delta-G solvation = -60.882943 kcal Electronic energy + Delta-G solvation = -32465.643465 eV Core-core repulsion = 27849.466768 eV Total energy + Delta-G solvation = -4616.176697 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.70170 -41.27991 -40.76323 -39.43414 -39.16347 -37.52389 -37.39585 -34.91803 -34.24288 -32.46639 -31.95926 -31.24103 -30.72406 -28.54936 -26.92338 -26.88168 -25.87733 -23.88376 -23.65551 -23.45123 -22.68599 -21.85690 -21.52362 -20.77640 -19.51895 -19.22607 -18.16333 -17.93011 -17.62153 -17.47205 -17.16350 -16.88201 -16.81069 -16.54561 -16.47731 -16.29220 -16.16679 -15.79215 -15.52751 -15.23823 -15.02135 -14.75695 -14.64737 -14.38866 -14.29437 -14.13095 -14.06555 -13.60865 -13.58481 -13.30465 -13.26909 -13.08604 -12.76854 -12.71738 -12.62275 -12.37424 -12.33409 -12.32100 -12.27653 -11.94711 -11.68915 -11.60952 -11.55739 -11.42265 -10.96425 -10.68817 -10.14317 -9.99276 -9.91773 -9.24244 -9.19323 -4.91140 0.21879 0.35040 0.41475 0.44709 1.29326 1.56175 1.61915 1.83081 1.95853 2.17906 2.50156 2.68231 2.79921 3.28571 3.36527 3.39198 3.61191 3.65564 3.66680 3.69282 3.85161 3.87788 3.88354 3.96069 3.98064 4.11472 4.15555 4.21526 4.25748 4.29570 4.35254 4.41270 4.44582 4.46617 4.52599 4.55710 4.56282 4.61464 4.64327 4.69353 4.72243 4.80277 4.86542 4.99509 5.00255 5.01212 5.05421 5.16307 5.29377 5.32845 5.39279 5.44717 5.45762 5.46585 5.58099 5.75254 5.82812 6.42406 6.43353 6.45458 6.50173 7.20912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.093 4.093 3 Si 0.782 3.218 4 C -0.082 4.082 5 C -0.160 4.160 6 C -0.073 4.073 7 C -0.205 4.205 8 C 0.116 3.884 9 O -0.340 6.340 10 C 0.058 3.942 11 C -0.102 4.102 12 C -0.128 4.128 13 C 0.510 3.490 14 O -0.588 6.588 15 N -0.706 5.706 16 C 0.125 3.875 17 H 0.105 0.895 18 C -0.165 4.165 19 C 0.051 3.949 20 H 0.110 0.890 21 O -0.310 6.310 22 C 0.111 3.889 23 C -0.220 4.220 24 C -0.090 4.090 25 C -0.168 4.168 26 C -0.086 4.086 27 C -0.170 4.170 28 C -0.123 4.123 29 C -0.153 4.153 30 H 0.386 0.614 31 H 0.121 0.879 32 H -0.278 1.278 33 H -0.304 1.304 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.420 0.580 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.148 0.852 50 H 0.136 0.864 51 H 0.111 0.889 52 H 0.097 0.903 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.894 1.225 -6.420 9.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.201 4.201 3 Si 0.687 3.313 4 C -0.083 4.083 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.071 3.929 9 O -0.254 6.254 10 C -0.017 4.017 11 C -0.140 4.140 12 C -0.167 4.167 13 C 0.299 3.701 14 O -0.468 6.468 15 N -0.358 5.358 16 C 0.020 3.980 17 H 0.123 0.877 18 C -0.204 4.204 19 C -0.005 4.005 20 H 0.127 0.873 21 O -0.224 6.224 22 C 0.066 3.934 23 C -0.239 4.239 24 C -0.108 4.108 25 C -0.186 4.186 26 C -0.104 4.104 27 C -0.189 4.189 28 C -0.161 4.161 29 C -0.172 4.172 30 H 0.235 0.765 31 H 0.138 0.862 32 H -0.204 1.204 33 H -0.233 1.233 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.258 0.742 44 H 0.089 0.911 45 H 0.116 0.884 46 H 0.156 0.844 47 H 0.159 0.841 48 H 0.159 0.841 49 H 0.166 0.834 50 H 0.154 0.846 51 H 0.130 0.870 52 H 0.115 0.885 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.315 1.391 -5.252 8.330 hybrid contribution -1.411 -0.434 -0.464 1.547 sum 4.904 0.957 -5.716 7.592 Atomic orbital electron populations 1.86573 1.18663 1.80536 1.50115 1.25440 0.83444 1.12714 0.98454 0.93895 0.90104 0.70883 0.76442 1.20138 0.97832 0.93355 0.96935 1.21188 1.00334 1.00892 0.95318 1.21310 0.97406 0.93513 0.96805 1.21610 1.02722 0.96857 1.01193 1.19201 0.95231 0.83553 0.94943 1.86052 1.71731 1.22889 1.44737 1.22995 0.99776 0.93107 0.85783 1.21156 1.01499 0.93030 0.98350 1.21545 1.04805 0.90468 0.99889 1.21227 0.78902 0.89309 0.80681 1.90737 1.39694 1.76040 1.40335 1.45810 1.53456 1.11320 1.25234 1.22028 0.95260 0.82201 0.98558 0.87718 1.24043 0.99274 0.97584 0.99504 1.24028 0.99346 0.97215 0.79936 0.87250 1.86120 1.58910 1.51396 1.25994 1.19252 0.90887 0.89156 0.94066 1.21487 0.99882 1.01830 1.00690 1.21301 0.97607 0.95428 0.96462 1.21429 1.00899 1.02269 0.93973 1.21319 0.93854 0.94360 1.00870 1.20726 1.03470 1.00921 0.93751 1.23521 0.95850 0.98065 0.98667 1.20322 1.04106 0.94940 0.97796 0.76479 0.86164 1.20429 1.23263 0.83458 0.82309 0.82878 0.89981 0.89629 0.92043 0.92354 0.85499 0.85157 0.74212 0.91096 0.88445 0.84443 0.84140 0.84131 0.83382 0.84636 0.87030 0.88478 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.95 12.76 -148.98 -1.90 -4.85 16 2 C -0.09 -0.15 2.82 71.24 0.20 0.05 16 3 Si 0.78 -1.30 29.79 68.60 2.04 0.74 16 4 C -0.08 -0.20 5.39 -19.88 -0.11 -0.31 16 5 C -0.16 0.22 8.67 22.28 0.19 0.41 16 6 C -0.07 0.21 10.04 22.25 0.22 0.43 16 7 C -0.21 0.19 9.04 22.37 0.20 0.39 16 8 C 0.12 0.55 6.69 22.51 0.15 0.70 16 9 O -0.34 -2.03 10.14 -92.43 -0.94 -2.97 16 10 C 0.06 -0.15 4.74 71.98 0.34 0.19 16 11 C -0.10 0.04 4.87 30.59 0.15 0.19 16 12 C -0.13 0.92 5.70 29.85 0.17 1.09 16 13 C 0.51 0.20 7.83 87.66 0.69 0.89 16 14 O -0.59 -6.63 15.60 -3.03 -0.05 -6.68 16 15 N -0.71 3.40 5.36 -440.04 -2.36 1.04 16 16 C 0.13 -0.31 4.21 45.52 0.19 -0.12 16 17 H 0.10 0.14 7.50 -2.38 -0.02 0.12 16 18 C -0.17 0.21 7.73 31.18 0.24 0.45 16 19 C 0.05 -0.07 3.69 31.18 0.12 0.04 16 20 H 0.11 -0.28 5.95 -2.39 -0.01 -0.30 16 21 O -0.31 -1.07 10.15 -92.52 -0.94 -2.01 16 22 C 0.11 0.52 6.68 22.50 0.15 0.67 16 23 C -0.22 -0.65 9.02 22.37 0.20 -0.45 16 24 C -0.09 -0.16 10.04 22.26 0.22 0.07 16 25 C -0.17 -0.19 10.04 22.28 0.22 0.03 16 26 C -0.09 -0.12 10.04 22.26 0.22 0.11 16 27 C -0.17 -0.61 9.99 22.36 0.22 -0.39 16 28 C -0.12 0.65 7.66 31.12 0.24 0.89 16 29 C -0.15 -0.97 9.55 22.36 0.21 -0.76 16 30 H 0.39 -0.23 8.70 -74.06 -0.64 -0.87 16 31 H 0.12 0.10 7.96 -2.39 -0.02 0.08 16 32 H -0.28 -0.37 7.11 99.48 0.71 0.34 16 33 H -0.30 -1.88 7.11 99.48 0.71 -1.18 16 34 H 0.15 -0.86 4.87 -2.91 -0.01 -0.88 16 35 H 0.16 -1.41 8.06 -2.91 -0.02 -1.43 16 36 H 0.15 -0.99 6.30 -2.91 -0.02 -1.01 16 37 H 0.08 -0.52 7.66 -2.39 -0.02 -0.54 16 38 H 0.09 -0.59 7.66 -2.39 -0.02 -0.61 16 39 H 0.06 0.25 8.10 -2.39 -0.02 0.23 16 40 H 0.06 0.26 8.10 -2.39 -0.02 0.25 16 41 H 0.13 -1.57 8.14 -2.38 -0.02 -1.59 16 42 H 0.13 -1.69 8.14 -2.39 -0.02 -1.71 16 43 H 0.42 -4.80 8.71 -92.71 -0.81 -5.60 16 44 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 46 H 0.14 -0.01 5.91 -2.91 -0.02 -0.03 16 47 H 0.14 -0.32 8.06 -2.91 -0.02 -0.34 16 48 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 49 H 0.15 -0.50 8.06 -2.91 -0.02 -0.52 16 50 H 0.14 0.18 8.06 -2.91 -0.02 0.16 16 51 H 0.11 -0.80 8.11 -2.39 -0.02 -0.82 16 52 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 53 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 Total: 0.00 -26.46 437.04 -0.16 -26.61 By element: Atomic # 1 Polarization: -15.99 SS G_CDS: -0.47 Total: -16.46 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 4.46 Total: 4.57 kcal Atomic # 7 Polarization: 3.40 SS G_CDS: -2.36 Total: 1.04 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -3.82 Total: -16.50 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: 2.04 Total: 0.74 kcal Total: -26.46 -0.16 -26.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12060300_4549616.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.272 kcal (2) G-P(sol) polarization free energy of solvation -26.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds