Wall clock time and date at job start Tue Mar 9 2021 13:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.46855 * 2 1 4 4 C 1.50702 * 109.47504 * 120.00152 * 2 1 3 5 5 C 1.38270 * 119.94584 * 64.99675 * 4 2 1 6 6 C 1.38145 * 120.05671 * 180.02562 * 5 4 2 7 7 C 1.38729 * 119.94161 * 0.02562 * 6 5 4 8 8 O 1.35904 * 120.05541 * 179.97438 * 7 6 5 9 9 C 1.42903 * 117.00369 * 179.97438 * 8 7 6 10 10 C 1.50690 * 109.46938 * 180.02562 * 9 8 7 11 11 C 1.36422 * 125.80208 * 90.00716 * 10 9 8 12 12 C 1.47376 * 127.19022 * 0.02562 * 11 10 9 13 13 O 1.21616 * 120.00304 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99832 * 179.97438 * 12 11 10 15 15 C 1.46507 * 120.00081 * 180.02562 * 14 12 11 16 16 H 1.09003 * 112.84476 * 23.80991 * 15 14 12 17 17 C 1.53776 * 113.61526 * 155.00490 * 15 14 12 18 18 C 1.53776 * 87.08348 * 139.98204 * 17 15 14 19 19 H 1.09006 * 113.61066 * 89.19862 * 18 17 15 20 20 O 1.42896 * 113.61680 * 220.01712 * 18 17 15 21 21 C 1.35903 * 117.00086 * 202.12309 * 20 18 17 22 22 C 1.38729 * 120.05685 * 173.78045 * 21 20 18 23 23 C 1.38140 * 119.94256 * 179.69671 * 22 21 20 24 24 C 1.38266 * 120.05815 * 0.59808 * 23 22 21 25 25 C 1.38265 * 120.10735 * 359.67775 * 24 23 22 26 26 C 1.38141 * 120.05756 * 0.02562 * 25 24 23 27 27 C 1.53774 * 113.61677 * 252.50327 * 15 14 12 28 28 C 1.47022 * 105.61774 * 179.97438 * 11 10 9 29 29 C 1.34184 * 105.95357 * 359.97438 * 28 11 10 30 30 O 1.33657 * 125.80289 * 270.28573 * 10 9 8 31 31 C 1.38736 * 119.89387 * 0.27809 * 7 6 5 32 32 C 1.38149 * 119.94032 * 359.46869 * 31 7 6 33 33 H 0.96703 * 113.99878 * 299.99371 * 1 2 3 34 34 H 1.09002 * 109.47276 * 240.00233 * 2 1 3 35 35 H 1.48498 * 109.99625 * 178.68173 * 3 2 1 36 36 H 1.48494 * 109.99877 * 299.99885 * 3 2 1 37 37 H 1.07994 * 119.96606 * 359.97438 * 5 4 2 38 38 H 1.07993 * 120.02698 * 180.02562 * 6 5 4 39 39 H 1.09000 * 109.46554 * 60.00147 * 9 8 7 40 40 H 1.08997 * 109.46591 * 300.00544 * 9 8 7 41 41 H 0.96996 * 120.00270 * 0.02562 * 14 12 11 42 42 H 1.09003 * 113.61514 * 254.53808 * 17 15 14 43 43 H 1.09008 * 113.61654 * 25.43375 * 17 15 14 44 44 H 1.08004 * 120.02689 * 359.97438 * 22 21 20 45 45 H 1.08001 * 119.97100 * 180.31781 * 23 22 21 46 46 H 1.08003 * 119.94740 * 179.70093 * 24 23 22 47 47 H 1.08003 * 119.97171 * 180.02562 * 25 24 23 48 48 H 1.08000 * 120.02721 * 179.97438 * 26 25 24 49 49 H 1.09007 * 113.61829 * 334.56663 * 27 15 14 50 50 H 1.09002 * 113.61697 * 105.46448 * 27 15 14 51 51 H 1.07998 * 127.02610 * 179.97438 * 28 11 10 52 52 H 1.07997 * 125.43684 * 179.97438 * 29 28 11 53 53 H 1.07998 * 120.03258 * 179.72370 * 31 7 6 54 54 H 1.07990 * 119.97074 * 180.23647 * 32 31 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6841 -2.0606 1.3972 6 6 2.1431 -2.7140 2.5245 7 6 2.8523 -2.0142 3.4899 8 8 3.3046 -2.6546 4.6000 9 6 4.0278 -1.8713 5.5516 10 6 4.4467 -2.7444 6.7061 11 6 5.6143 -3.4445 6.7947 12 6 6.6992 -3.4971 5.7986 13 8 6.6035 -2.8693 4.7615 14 7 7.7974 -4.2410 6.0371 15 6 8.8762 -4.2929 5.0472 16 1 8.8914 -3.4221 4.3918 17 6 10.2492 -4.6345 5.6497 18 6 10.4887 -5.5095 4.4081 19 1 10.9464 -4.9725 3.5772 20 8 11.1431 -6.7465 4.6971 21 6 11.7969 -7.3530 3.6715 22 6 12.5607 -8.4867 3.9081 23 6 13.2192 -9.1049 2.8629 24 6 13.1276 -8.5876 1.5839 25 6 12.3716 -7.4545 1.3465 26 6 11.7063 -6.8361 2.3873 27 6 8.9599 -5.6326 4.2969 28 6 5.5646 -4.1345 8.0920 29 6 4.3937 -3.7889 8.6489 30 8 3.7353 -2.9686 7.8152 31 6 3.0938 -0.6582 3.3232 32 6 2.6371 -0.0105 2.1917 33 1 -0.3933 0.4416 0.7651 34 1 1.7923 -0.5138 -0.8900 35 1 3.5345 1.7703 0.0321 36 1 1.5614 2.4679 -1.2085 37 1 1.1309 -2.6045 0.6460 38 1 1.9501 -3.7686 2.6541 39 1 3.3916 -1.0653 5.9171 40 1 4.9129 -1.4485 5.0763 41 1 7.8736 -4.7421 6.8641 42 1 10.9213 -3.7791 5.7174 43 1 10.1895 -5.2017 6.5787 44 1 12.6367 -8.8882 4.9078 45 1 13.8097 -9.9905 3.0456 46 1 13.6471 -9.0696 0.7689 47 1 12.3013 -7.0525 0.3466 48 1 11.1163 -5.9508 2.2014 49 1 8.5477 -6.4727 4.8560 50 1 8.5911 -5.5831 3.2724 51 1 6.3168 -4.7863 8.5111 52 1 4.0357 -4.1222 9.6118 53 1 3.6418 -0.1103 4.0755 54 1 2.8281 1.0441 2.0596 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12060300_4549634.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:04 Heat of formation + Delta-G solvation = -26.041499 kcal Electronic energy + Delta-G solvation = -38749.499078 eV Core-core repulsion = 33587.010225 eV Total energy + Delta-G solvation = -5162.488853 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.165 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.73191 -41.69035 -41.31255 -40.64723 -39.36246 -39.18266 -37.49627 -37.18382 -34.73392 -33.72841 -32.82581 -32.00304 -31.95679 -31.40064 -30.73123 -28.09523 -26.93177 -26.49017 -26.07154 -24.55316 -23.82659 -23.56075 -22.97922 -22.40317 -21.96185 -21.46837 -20.56677 -19.52080 -19.51106 -19.14226 -18.27085 -17.69306 -17.45683 -17.23750 -16.99134 -16.86244 -16.81583 -16.55479 -16.50173 -16.30951 -16.10112 -15.91160 -15.70519 -15.59029 -15.37431 -15.15590 -14.76218 -14.63995 -14.39182 -14.37130 -14.21607 -14.18126 -13.84469 -13.71187 -13.62425 -13.56929 -13.49442 -13.13005 -12.79235 -12.64441 -12.38799 -12.35974 -12.28186 -12.09141 -12.07537 -11.78626 -11.71246 -11.43770 -11.18117 -10.98764 -10.41981 -10.23273 -10.07772 -9.99679 -9.84768 -9.26389 -9.20015 -5.01326 -0.06590 0.24819 0.27225 0.34748 0.44243 1.01352 1.32023 1.49300 1.63763 1.87158 1.96034 2.04910 2.34675 2.45917 2.62482 2.79531 3.25634 3.33076 3.33956 3.54949 3.57096 3.64335 3.67429 3.67925 3.70959 3.78656 3.87262 3.90033 3.93564 3.95423 4.09893 4.15811 4.27362 4.28387 4.40102 4.44541 4.45228 4.47129 4.48001 4.53604 4.58761 4.62130 4.64313 4.71304 4.77847 4.79320 4.84680 4.93419 4.96075 5.04634 5.12084 5.22967 5.24683 5.31530 5.38247 5.44979 5.45548 5.57640 5.66525 5.82273 5.87079 6.24095 6.37679 6.42664 6.78649 7.03989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.069 4.069 3 Si 0.776 3.224 4 C -0.162 4.162 5 C -0.059 4.059 6 C -0.164 4.164 7 C 0.124 3.876 8 O -0.323 6.323 9 C 0.134 3.866 10 C 0.042 3.958 11 C -0.226 4.226 12 C 0.586 3.414 13 O -0.570 6.570 14 N -0.695 5.695 15 C 0.128 3.872 16 H 0.113 0.887 17 C -0.123 4.123 18 C 0.055 3.945 19 H 0.113 0.887 20 O -0.311 6.311 21 C 0.112 3.888 22 C -0.170 4.170 23 C -0.086 4.086 24 C -0.168 4.168 25 C -0.090 4.090 26 C -0.219 4.219 27 C -0.167 4.167 28 C -0.198 4.198 29 C -0.011 4.011 30 O -0.176 6.176 31 C -0.204 4.204 32 C -0.074 4.074 33 H 0.395 0.605 34 H 0.105 0.895 35 H -0.288 1.288 36 H -0.298 1.298 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.416 0.584 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.135 0.865 45 H 0.148 0.852 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.191 0.809 52 H 0.252 0.748 53 H 0.150 0.850 54 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 0.781 6.693 7.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.179 4.179 3 Si 0.682 3.318 4 C -0.162 4.162 5 C -0.077 4.077 6 C -0.182 4.182 7 C 0.080 3.920 8 O -0.238 6.238 9 C 0.060 3.940 10 C -0.011 4.011 11 C -0.230 4.230 12 C 0.375 3.625 13 O -0.451 6.451 14 N -0.346 5.346 15 C 0.023 3.977 16 H 0.131 0.869 17 C -0.161 4.161 18 C -0.002 4.002 19 H 0.130 0.870 20 O -0.224 6.224 21 C 0.067 3.933 22 C -0.189 4.189 23 C -0.104 4.104 24 C -0.186 4.186 25 C -0.108 4.108 26 C -0.238 4.238 27 C -0.206 4.206 28 C -0.216 4.216 29 C -0.077 4.077 30 O -0.072 6.072 31 C -0.223 4.223 32 C -0.091 4.091 33 H 0.245 0.755 34 H 0.122 0.878 35 H -0.215 1.215 36 H -0.226 1.226 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.254 0.746 42 H 0.119 0.881 43 H 0.128 0.872 44 H 0.153 0.847 45 H 0.166 0.834 46 H 0.159 0.841 47 H 0.159 0.841 48 H 0.156 0.844 49 H 0.113 0.887 50 H 0.091 0.909 51 H 0.208 0.792 52 H 0.268 0.732 53 H 0.168 0.832 54 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.087 1.358 5.342 5.894 hybrid contribution 0.298 -0.990 -0.075 1.037 sum 2.385 0.367 5.267 5.793 Atomic orbital electron populations 1.86462 1.17292 1.82215 1.50462 1.25118 0.85218 1.10732 0.96836 0.93806 0.77734 0.75385 0.84849 1.20358 1.02692 0.95037 0.98125 1.20939 0.96691 0.94001 0.96062 1.20614 1.02337 1.01037 0.94239 1.19175 0.94442 0.91782 0.86650 1.86052 1.69053 1.39024 1.29643 1.21170 0.98259 0.90782 0.83797 1.22073 0.90638 1.00141 0.88216 1.21366 0.97313 1.05588 0.98771 1.17461 0.81728 0.78456 0.84865 1.90776 1.80268 1.46078 1.27952 1.45550 1.17500 1.48817 1.22775 1.22125 0.86082 0.98138 0.91389 0.86925 1.23535 0.95047 0.99359 0.98131 1.23954 0.91808 0.83948 1.00474 0.86983 1.86119 1.65150 1.36468 1.34701 1.19248 0.93061 0.93713 0.87317 1.20724 1.00513 0.96436 1.01181 1.21315 0.97482 0.99518 0.92105 1.21429 1.01553 0.97723 0.97859 1.21297 0.95020 0.95136 0.99341 1.21484 1.06059 1.03722 0.92532 1.24031 0.95680 0.98755 1.02090 1.23253 1.00853 1.04511 0.93023 1.24912 0.92571 0.93044 0.97140 1.83801 1.44202 1.53983 1.25175 1.21434 1.06167 0.93253 1.01422 1.21019 0.95649 1.00065 0.92380 0.75504 0.87799 1.21509 1.22613 0.84461 0.85059 0.87806 0.87463 0.74588 0.88096 0.87158 0.84676 0.83393 0.84126 0.84145 0.84431 0.88711 0.90910 0.79191 0.73192 0.83221 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.97 12.83 -148.98 -1.91 -2.88 16 2 C -0.07 -0.09 2.80 71.24 0.20 0.11 16 3 Si 0.78 -0.69 29.80 68.60 2.04 1.35 16 4 C -0.16 -0.45 5.35 -19.85 -0.11 -0.55 16 5 C -0.06 -0.28 9.68 22.26 0.22 -0.06 16 6 C -0.16 -1.11 9.99 22.37 0.22 -0.89 16 7 C 0.12 0.91 6.69 22.51 0.15 1.06 16 8 O -0.32 -2.92 10.12 -92.47 -0.94 -3.85 16 9 C 0.13 0.57 4.74 71.23 0.34 0.91 16 10 C 0.04 0.20 7.00 25.26 0.18 0.37 16 11 C -0.23 -0.75 6.31 -18.99 -0.12 -0.87 16 12 C 0.59 3.28 7.81 86.65 0.68 3.96 16 13 O -0.57 -7.05 14.44 -4.08 -0.06 -7.11 16 14 N -0.70 0.66 5.35 -443.35 -2.37 -1.71 16 15 C 0.13 -0.15 4.24 45.51 0.19 0.04 16 16 H 0.11 0.16 7.46 -2.39 -0.02 0.15 16 17 C -0.12 0.55 7.66 31.12 0.24 0.79 16 18 C 0.05 -0.05 3.63 31.12 0.11 0.06 16 19 H 0.11 -0.29 6.04 -2.38 -0.01 -0.30 16 20 O -0.31 -1.23 10.15 -92.46 -0.94 -2.17 16 21 C 0.11 0.56 6.68 22.51 0.15 0.71 16 22 C -0.17 -0.68 9.99 22.36 0.22 -0.46 16 23 C -0.09 -0.15 10.04 22.25 0.22 0.07 16 24 C -0.17 -0.25 10.04 22.28 0.22 -0.03 16 25 C -0.09 -0.18 10.04 22.25 0.22 0.04 16 26 C -0.22 -0.71 9.01 22.36 0.20 -0.51 16 27 C -0.17 0.01 7.71 31.12 0.24 0.25 16 28 C -0.20 0.77 10.60 23.65 0.25 1.02 16 29 C -0.01 0.05 12.03 66.89 0.80 0.86 16 30 O -0.18 -0.37 10.52 4.38 0.05 -0.32 16 31 C -0.20 -0.63 9.04 22.37 0.20 -0.43 16 32 C -0.07 -0.08 8.66 22.26 0.19 0.11 16 33 H 0.40 -2.54 8.70 -74.06 -0.64 -3.18 16 34 H 0.10 0.28 7.96 -2.39 -0.02 0.26 16 35 H -0.29 -1.21 7.11 99.48 0.71 -0.50 16 36 H -0.30 -1.90 7.11 99.48 0.71 -1.19 16 37 H 0.14 0.40 8.06 -2.91 -0.02 0.38 16 38 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.10 -0.10 7.65 -2.39 -0.02 -0.12 16 40 H 0.11 0.57 6.02 -2.39 -0.01 0.55 16 41 H 0.42 -2.71 7.90 -92.71 -0.73 -3.44 16 42 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 43 H 0.11 -0.67 8.12 -2.38 -0.02 -0.69 16 44 H 0.14 0.25 8.06 -2.91 -0.02 0.22 16 45 H 0.15 -0.44 8.06 -2.91 -0.02 -0.46 16 46 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 47 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 48 H 0.14 0.02 5.95 -2.91 -0.02 0.00 16 49 H 0.09 0.07 8.14 -2.38 -0.02 0.05 16 50 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 51 H 0.19 -2.06 7.74 -2.91 -0.02 -2.08 16 52 H 0.25 -3.44 8.06 -2.91 -0.02 -3.46 16 53 H 0.15 -0.20 6.30 -2.91 -0.02 -0.22 16 54 H 0.15 -0.65 4.90 -2.92 -0.01 -0.66 16 Total: 0.00 -26.08 452.75 0.75 -25.34 By element: Atomic # 1 Polarization: -14.85 SS G_CDS: -0.36 Total: -15.21 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.23 Total: 6.57 kcal Atomic # 7 Polarization: 0.66 SS G_CDS: -2.37 Total: -1.71 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -3.80 Total: -16.33 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: 2.04 Total: 1.35 kcal Total: -26.08 0.75 -25.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12060300_4549634.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.704 kcal (2) G-P(sol) polarization free energy of solvation -26.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds