Wall clock time and date at job start Tue Mar 9 2021 13:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86296 * 109.47497 * 2 1 4 4 C 1.50707 * 109.46757 * 119.99826 * 2 1 3 5 5 C 1.38246 * 119.94330 * 64.99906 * 4 2 1 6 6 C 1.38166 * 120.05251 * 179.97438 * 5 4 2 7 7 N 1.47999 * 120.02533 * 180.02562 * 6 5 4 8 8 O 1.21802 * 120.00117 * 0.02562 * 7 6 5 9 9 O 1.21804 * 120.00119 * 180.02562 * 7 6 5 10 10 C 1.38703 * 119.94734 * 0.02562 * 6 5 4 11 11 O 1.35896 * 120.06165 * 179.97438 * 10 6 5 12 12 C 1.42894 * 117.00509 * 179.97438 * 11 10 6 13 13 C 1.50702 * 109.47065 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00277 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00006 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00204 * 179.97438 * 15 13 12 17 17 H 1.08996 * 112.84904 * 334.67205 * 16 15 13 18 18 C 1.53785 * 113.61204 * 105.86584 * 16 15 13 19 19 C 1.53954 * 87.01960 * 139.95416 * 18 16 15 20 20 H 1.09005 * 113.54229 * 89.18231 * 19 18 16 21 21 O 1.42895 * 113.74689 * 220.05643 * 19 18 16 22 22 C 1.35902 * 117.00301 * 254.28582 * 21 19 18 23 23 C 1.38733 * 120.05339 * 5.42564 * 22 21 19 24 24 C 1.38148 * 119.94161 * 179.70279 * 23 22 21 25 25 C 1.38265 * 120.05584 * 0.59509 * 24 23 22 26 26 C 1.38265 * 120.10978 * 359.67888 * 25 24 23 27 27 C 1.38141 * 120.05624 * 0.02614 * 26 25 24 28 28 C 1.53781 * 113.61736 * 203.47196 * 16 15 13 29 29 C 1.38761 * 119.89064 * 359.97438 * 10 6 5 30 30 C 1.38126 * 119.93925 * 359.72581 * 29 10 6 31 31 H 0.96702 * 113.99947 * 300.00171 * 1 2 3 32 32 H 1.09003 * 109.47152 * 239.99330 * 2 1 3 33 33 H 1.48500 * 110.00261 * 178.68127 * 3 2 1 34 34 H 1.48503 * 109.99717 * 299.99945 * 3 2 1 35 35 H 1.08000 * 119.97266 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.47283 * 299.99540 * 12 11 10 37 37 H 1.09002 * 109.47370 * 59.99927 * 12 11 10 38 38 H 0.97005 * 119.99811 * 0.02562 * 15 13 12 39 39 H 1.09005 * 113.61329 * 254.53009 * 18 16 15 40 40 H 1.08995 * 113.61462 * 25.43433 * 18 16 15 41 41 H 1.08001 * 120.02790 * 359.97438 * 23 22 21 42 42 H 1.08008 * 119.96734 * 180.32021 * 24 23 22 43 43 H 1.07997 * 119.94228 * 179.69894 * 25 24 23 44 44 H 1.08000 * 119.96710 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.02590 * 180.02562 * 27 26 25 46 46 H 1.09002 * 113.61511 * 334.57377 * 28 16 15 47 47 H 1.09003 * 113.61571 * 105.38563 * 28 16 15 48 48 H 1.07992 * 120.03023 * 179.97438 * 29 10 6 49 49 H 1.07998 * 119.97183 * 180.26619 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 1.6839 -2.0603 1.3973 6 6 2.1438 -2.7140 2.5244 7 7 1.8791 -4.1592 2.7020 8 8 1.2561 -4.7730 1.8542 9 8 2.2843 -4.7349 3.6960 10 6 2.8537 -2.0146 3.4891 11 8 3.3066 -2.6551 4.5988 12 6 4.0307 -1.8721 5.5499 13 6 4.4493 -2.7451 6.7047 14 8 4.1568 -3.9221 6.7124 15 7 5.1496 -2.2181 7.7287 16 6 5.5560 -3.0666 8.8516 17 1 4.9072 -3.9322 8.9845 18 6 7.0541 -3.4140 8.8504 19 6 7.0188 -3.2173 10.3769 20 1 6.7709 -4.1250 10.9272 21 8 8.1697 -2.5495 10.8978 22 6 9.0730 -3.3104 11.5701 23 6 8.9146 -4.6874 11.6290 24 6 9.8376 -5.4592 12.3079 25 6 10.9118 -4.8593 12.9386 26 6 11.0688 -3.4866 12.8862 27 6 10.1519 -2.7110 12.2035 28 6 5.8160 -2.2862 10.1509 29 6 3.1007 -0.6598 3.3195 30 6 2.6442 -0.0122 2.1880 31 1 -0.3933 0.4417 0.7650 32 1 1.7924 -0.5139 -0.8899 33 1 3.5347 1.7702 0.0321 34 1 1.5616 2.4678 -1.2085 35 1 1.1315 -2.6045 0.6456 36 1 4.9156 -1.4494 5.0741 37 1 3.3949 -1.0659 5.9161 38 1 5.3838 -1.2768 7.7224 39 1 7.2643 -4.4394 8.5461 40 1 7.6717 -2.6820 8.3300 41 1 8.0728 -5.1559 11.1409 42 1 9.7175 -6.5318 12.3496 43 1 11.6296 -5.4640 13.4729 44 1 11.9090 -3.0205 13.3794 45 1 10.2753 -1.6388 12.1625 46 1 6.0944 -1.2452 9.9868 47 1 5.0273 -2.4011 10.8945 48 1 3.6528 -0.1130 4.0694 49 1 2.8398 1.0413 2.0534 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12060300_4549638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:13 Heat of formation + Delta-G solvation = -41.572031 kcal Electronic energy + Delta-G solvation = -35959.119713 eV Core-core repulsion = 30823.839203 eV Total energy + Delta-G solvation = -5135.280511 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.144 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.30134 -41.87607 -41.54079 -40.71327 -39.69074 -39.06605 -37.60241 -37.50389 -37.30666 -34.48126 -33.45871 -32.25989 -31.94696 -30.76314 -29.91482 -27.82172 -26.88884 -26.68254 -25.86626 -24.16352 -23.57036 -23.05085 -22.71742 -21.77910 -20.90748 -20.53204 -19.78295 -19.52487 -19.14969 -18.64761 -18.42303 -18.10576 -17.63927 -17.57861 -17.14007 -16.79641 -16.49630 -16.46709 -16.29546 -16.14770 -15.90229 -15.55832 -15.53261 -15.17381 -15.05273 -14.69669 -14.37412 -14.14434 -14.05030 -13.93436 -13.77586 -13.56020 -13.52152 -13.22672 -12.76618 -12.71548 -12.62117 -12.41054 -12.35652 -12.31664 -12.28687 -12.23955 -12.20247 -11.97619 -11.66979 -11.40792 -11.02262 -10.83588 -10.55788 -10.20965 -9.97879 -9.80790 -9.17701 -5.00749 -1.32097 -0.24858 0.15115 0.34709 0.36508 0.46175 1.18023 1.26717 1.41713 1.65069 2.02579 2.04522 2.08426 2.46044 2.81319 3.11548 3.23953 3.29910 3.37627 3.39439 3.52257 3.62186 3.67062 3.71066 3.71397 3.78606 3.89320 3.93079 3.97715 4.02347 4.18789 4.27627 4.31223 4.35052 4.47602 4.50920 4.52830 4.57668 4.63191 4.64184 4.74334 4.81350 4.83868 4.89700 4.97891 5.06520 5.07189 5.18348 5.33149 5.40354 5.46981 5.59614 5.75282 5.84026 6.40610 6.41677 6.44993 6.73988 7.12418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.082 4.082 3 Si 0.800 3.200 4 C -0.151 4.151 5 C -0.004 4.004 6 C -0.105 4.105 7 N 0.034 4.966 8 O -0.206 6.206 9 O -0.172 6.172 10 C 0.194 3.806 11 O -0.292 6.292 12 C 0.024 3.976 13 C 0.510 3.490 14 O -0.564 6.564 15 N -0.695 5.695 16 C 0.128 3.872 17 H 0.104 0.896 18 C -0.166 4.166 19 C 0.050 3.950 20 H 0.108 0.892 21 O -0.308 6.308 22 C 0.113 3.887 23 C -0.221 4.221 24 C -0.091 4.091 25 C -0.168 4.168 26 C -0.087 4.087 27 C -0.169 4.169 28 C -0.120 4.120 29 C -0.188 4.188 30 C -0.003 4.003 31 H 0.398 0.602 32 H 0.108 0.892 33 H -0.267 1.267 34 H -0.306 1.306 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.425 0.575 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.208 0.792 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.575 14.380 4.514 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.191 4.191 3 Si 0.704 3.296 4 C -0.152 4.152 5 C -0.024 4.024 6 C -0.191 4.191 7 N 0.544 4.456 8 O -0.412 6.412 9 O -0.386 6.386 10 C 0.144 3.856 11 O -0.202 6.202 12 C -0.053 4.053 13 C 0.296 3.704 14 O -0.441 6.441 15 N -0.350 5.350 16 C 0.023 3.977 17 H 0.122 0.878 18 C -0.205 4.205 19 C -0.007 4.007 20 H 0.126 0.874 21 O -0.222 6.222 22 C 0.068 3.932 23 C -0.239 4.239 24 C -0.109 4.109 25 C -0.186 4.186 26 C -0.104 4.104 27 C -0.188 4.188 28 C -0.158 4.158 29 C -0.206 4.206 30 C -0.020 4.020 31 H 0.248 0.752 32 H 0.125 0.875 33 H -0.193 1.193 34 H -0.234 1.234 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.263 0.737 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.166 0.834 45 H 0.155 0.845 46 H 0.135 0.865 47 H 0.116 0.884 48 H 0.225 0.775 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.002 14.441 3.485 15.385 hybrid contribution -0.115 -1.729 -0.445 1.789 sum 3.887 12.712 3.040 13.636 Atomic orbital electron populations 1.86536 1.17194 1.82234 1.50628 1.25477 0.85504 1.12064 0.96006 0.93860 0.77851 0.72438 0.85483 1.20459 1.02806 0.92160 0.99803 1.20849 0.93275 0.95178 0.93057 1.20868 1.15946 0.79717 1.02539 1.43905 0.97908 1.04291 0.99464 1.94506 1.40423 1.67981 1.38319 1.94675 1.53671 1.70896 1.19390 1.18966 0.89578 0.92208 0.84800 1.86466 1.67384 1.38005 1.28351 1.23142 1.00215 0.93833 0.88101 1.20558 0.77807 0.88083 0.83995 1.90853 1.55464 1.18804 1.79019 1.45515 1.55670 1.14255 1.19533 1.22043 0.94657 0.95168 0.85858 0.87782 1.24065 0.97293 1.03258 0.95854 1.24016 0.84890 0.97816 0.93951 0.87438 1.86111 1.31464 1.36939 1.67694 1.19230 0.90741 0.90270 0.92985 1.21488 1.03155 0.92961 1.06305 1.21296 0.93572 1.00766 0.95253 1.21422 0.99540 0.95403 1.02281 1.21317 0.98368 0.93922 0.96837 1.20722 0.95109 1.01317 1.01617 1.23523 0.95583 1.00648 0.96012 1.21836 1.06312 0.89857 1.02620 1.21725 0.88943 1.01642 0.89706 0.75155 0.87462 1.19282 1.23413 0.83372 0.83922 0.83370 0.73654 0.91281 0.88025 0.84482 0.84284 0.84232 0.83399 0.84501 0.86484 0.88390 0.77501 0.79239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.13 12.83 -148.98 -1.91 0.22 16 2 C -0.08 0.52 2.80 71.24 0.20 0.72 16 3 Si 0.80 -8.35 29.80 68.60 2.04 -6.30 16 4 C -0.15 0.91 5.35 -19.85 -0.11 0.81 16 5 C 0.00 -0.01 9.19 22.25 0.20 0.20 16 6 C -0.11 -0.70 6.86 36.47 0.25 -0.45 16 7 N 0.03 0.57 4.45 -46.25 -0.21 0.37 16 8 O -0.21 -3.85 18.45 18.88 0.35 -3.51 16 9 O -0.17 -3.67 17.24 25.60 0.44 -3.23 16 10 C 0.19 -0.05 6.67 22.51 0.15 0.10 16 11 O -0.29 -1.01 7.68 -63.35 -0.49 -1.50 16 12 C 0.02 -0.21 5.22 71.24 0.37 0.16 16 13 C 0.51 -0.23 7.91 87.66 0.69 0.46 16 14 O -0.56 -7.54 16.12 16.00 0.26 -7.28 16 15 N -0.70 5.35 5.36 -440.03 -2.36 2.99 16 16 C 0.13 -0.55 4.21 45.52 0.19 -0.36 16 17 H 0.10 0.04 7.50 -2.39 -0.02 0.02 16 18 C -0.17 0.47 7.73 31.18 0.24 0.71 16 19 C 0.05 -0.14 3.68 31.18 0.11 -0.03 16 20 H 0.11 -0.37 5.95 -2.38 -0.01 -0.39 16 21 O -0.31 -0.59 10.15 -92.45 -0.94 -1.53 16 22 C 0.11 0.41 6.68 22.51 0.15 0.56 16 23 C -0.22 -0.54 9.02 22.37 0.20 -0.34 16 24 C -0.09 -0.14 10.04 22.25 0.22 0.08 16 25 C -0.17 -0.15 10.04 22.28 0.22 0.07 16 26 C -0.09 -0.07 10.04 22.25 0.22 0.15 16 27 C -0.17 -0.45 9.99 22.36 0.22 -0.23 16 28 C -0.12 0.90 7.66 31.12 0.24 1.14 16 29 C -0.19 2.23 9.04 22.37 0.20 2.43 16 30 C 0.00 0.04 8.66 22.26 0.19 0.23 16 31 H 0.40 -5.09 8.70 -74.06 -0.64 -5.73 16 32 H 0.11 -0.44 7.96 -2.39 -0.02 -0.46 16 33 H -0.27 2.10 7.11 99.48 0.71 2.81 16 34 H -0.31 0.17 7.11 99.48 0.71 0.88 16 35 H 0.15 0.58 7.61 -2.91 -0.02 0.56 16 36 H 0.14 -2.44 7.66 -2.39 -0.02 -2.46 16 37 H 0.15 -2.67 7.66 -2.39 -0.02 -2.69 16 38 H 0.42 -6.86 8.71 -92.70 -0.81 -7.67 16 39 H 0.07 0.00 8.14 -2.38 -0.02 -0.02 16 40 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.14 -0.06 5.91 -2.91 -0.02 -0.08 16 42 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 43 H 0.14 -0.41 8.06 -2.91 -0.02 -0.44 16 44 H 0.15 -0.57 8.06 -2.91 -0.02 -0.60 16 45 H 0.14 0.02 8.06 -2.91 -0.02 0.00 16 46 H 0.12 -1.21 8.11 -2.39 -0.02 -1.23 16 47 H 0.10 -0.84 8.14 -2.39 -0.02 -0.86 16 48 H 0.21 -4.61 6.30 -2.91 -0.02 -4.62 16 49 H 0.19 -3.92 4.90 -2.91 -0.01 -3.94 16 Total: 0.00 -41.97 420.74 1.01 -40.96 By element: Atomic # 1 Polarization: -27.26 SS G_CDS: -0.37 Total: -27.62 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 4.19 Total: 6.43 kcal Atomic # 7 Polarization: 5.92 SS G_CDS: -2.57 Total: 3.35 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -2.29 Total: -16.82 kcal Atomic # 14 Polarization: -8.35 SS G_CDS: 2.04 Total: -6.30 kcal Total: -41.97 1.01 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12060300_4549638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.616 kcal (2) G-P(sol) polarization free energy of solvation -41.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds