Wall clock time and date at job start Tue Mar 9 2021 13:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.46741 * 2 1 4 4 C 1.50700 * 109.47334 * 120.00086 * 2 1 3 5 5 C 1.34236 * 126.50190 * 255.35779 * 4 2 1 6 6 N 1.36831 * 109.93602 * 180.13834 * 5 4 2 7 7 C 1.46501 * 125.05734 * 179.81845 * 6 5 4 8 8 C 1.50706 * 109.46794 * 264.68868 * 7 6 5 9 9 O 1.21279 * 119.99982 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99640 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99919 * 180.02562 * 10 8 7 12 12 H 1.08999 * 112.90136 * 23.75473 * 11 10 8 13 13 C 1.53775 * 113.61476 * 155.00032 * 11 10 8 14 14 C 1.53782 * 87.07984 * 139.98316 * 13 11 10 15 15 H 1.09002 * 113.61170 * 89.11699 * 14 13 11 16 16 O 1.42894 * 113.61512 * 220.01722 * 14 13 11 17 17 C 1.35903 * 117.00275 * 202.11648 * 16 14 13 18 18 C 1.38729 * 120.05424 * 173.78437 * 17 16 14 19 19 C 1.38153 * 119.93769 * 179.69809 * 18 17 16 20 20 C 1.38261 * 120.05501 * 0.59524 * 19 18 17 21 21 C 1.38265 * 120.11457 * 359.67998 * 20 19 18 22 22 C 1.38146 * 120.05383 * 0.02562 * 21 20 19 23 23 C 1.53771 * 113.61563 * 252.50280 * 11 10 8 24 24 C 1.37686 * 109.87529 * 359.54663 * 6 5 4 25 25 C 1.39093 * 133.51491 * 180.28885 * 24 6 5 26 26 C 1.37782 * 119.77846 * 179.97438 * 25 24 6 27 27 C 1.38793 * 120.66808 * 359.97438 * 26 25 24 28 28 C 1.36652 * 120.52832 * 0.03924 * 27 26 25 29 29 C 1.39600 * 119.76482 * 359.96355 * 28 27 26 30 30 H 0.96696 * 114.00132 * 59.99980 * 1 2 3 31 31 H 1.09002 * 109.47132 * 240.00796 * 2 1 3 32 32 H 1.48496 * 110.00397 * 298.68315 * 3 2 1 33 33 H 1.48500 * 109.99681 * 60.00487 * 3 2 1 34 34 H 1.08002 * 125.02738 * 359.96915 * 5 4 2 35 35 H 1.09005 * 109.46905 * 144.69185 * 7 6 5 36 36 H 1.08994 * 109.47486 * 24.69469 * 7 6 5 37 37 H 0.97005 * 120.00421 * 0.02562 * 10 8 7 38 38 H 1.09003 * 113.61482 * 254.53313 * 13 11 10 39 39 H 1.08996 * 113.61334 * 25.43592 * 13 11 10 40 40 H 1.07998 * 120.03326 * 359.97438 * 18 17 16 41 41 H 1.08002 * 119.96804 * 180.31389 * 19 18 17 42 42 H 1.08007 * 119.94093 * 179.69666 * 20 19 18 43 43 H 1.08001 * 119.97517 * 180.02562 * 21 20 19 44 44 H 1.07998 * 120.02414 * 179.97438 * 22 21 20 45 45 H 1.09004 * 113.61470 * 334.56252 * 23 11 10 46 46 H 1.08997 * 113.62197 * 105.46835 * 23 11 10 47 47 H 1.08005 * 120.10640 * 359.97438 * 25 24 6 48 48 H 1.08002 * 119.66791 * 179.97438 * 26 25 24 49 49 H 1.08004 * 119.73634 * 180.02562 * 27 26 25 50 50 H 1.08002 * 120.12099 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4547 -0.1373 2.3257 6 7 2.8018 -1.0990 3.2350 7 6 3.4057 -0.8403 4.5444 8 6 4.9042 -0.9625 4.4394 9 8 5.4170 -1.2380 3.3755 10 7 5.6742 -0.7655 5.5278 11 6 7.1309 -0.8837 5.4256 12 1 7.4996 -0.7222 4.4127 13 6 7.8906 -0.0790 6.4933 14 6 8.8532 -1.2738 6.5962 15 1 9.6928 -1.2190 5.9032 16 8 9.2553 -1.5714 7.9347 17 6 10.4124 -2.2667 8.0913 18 6 10.9295 -2.4783 9.3611 19 6 12.1027 -3.1907 9.5180 20 6 12.7678 -3.6821 8.4099 21 6 12.2575 -3.4676 7.1429 22 6 11.0815 -2.7610 6.9811 23 6 7.6944 -2.1499 6.0918 24 6 2.4933 -2.3457 2.7385 25 6 2.6279 -3.6362 3.2395 26 6 2.2143 -4.7107 2.4827 27 6 1.6632 -4.5192 1.2233 28 6 1.5219 -3.2601 0.7115 29 6 1.9343 -2.1570 1.4612 30 1 -0.3933 0.4417 -0.7650 31 1 1.7923 -0.5137 -0.8901 32 1 1.5877 2.4586 -1.2241 33 1 1.5614 2.4678 1.2086 34 1 2.5852 0.9255 2.4669 35 1 3.0318 -1.5659 5.2667 36 1 3.1453 0.1660 4.8722 37 1 5.2639 -0.5455 6.3788 38 1 8.3583 0.8266 6.1068 39 1 7.3132 0.0960 7.4011 40 1 10.4130 -2.0902 10.2266 41 1 12.5029 -3.3601 10.5067 42 1 13.6875 -4.2346 8.5343 43 1 12.7787 -3.8528 6.2789 44 1 10.6836 -2.5934 5.9912 45 1 7.0634 -2.5412 6.8899 46 1 8.0038 -2.9164 5.3812 47 1 3.0552 -3.7955 4.2186 48 1 2.3200 -5.7120 2.8733 49 1 1.3436 -5.3723 0.6431 50 1 1.0926 -3.1187 -0.2694 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12060300_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:13 Heat of formation + Delta-G solvation = 32.666303 kcal Electronic energy + Delta-G solvation = -33142.394073 eV Core-core repulsion = 28682.615594 eV Total energy + Delta-G solvation = -4459.778478 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.46550 -41.70238 -40.65958 -39.36739 -37.97280 -37.68736 -37.38284 -34.58187 -33.97194 -31.95354 -31.35559 -30.71086 -30.14651 -29.06565 -27.05425 -26.37202 -25.34093 -23.74581 -23.52561 -23.07756 -22.40789 -21.75146 -20.99354 -20.41374 -19.54428 -18.56971 -18.31710 -18.19138 -17.65851 -17.46499 -16.83604 -16.66807 -16.56181 -16.31110 -16.20069 -15.82113 -15.63320 -15.50434 -15.19698 -14.80571 -14.75989 -14.60271 -14.42957 -14.39047 -14.14742 -14.00586 -13.78905 -13.69162 -13.42127 -13.36799 -12.81397 -12.70198 -12.63908 -12.45662 -12.43725 -12.39481 -12.35577 -11.96783 -11.74369 -11.58915 -11.50267 -11.09136 -10.39333 -10.28566 -10.26248 -9.96453 -9.16521 -8.99443 -8.50449 -4.88686 0.30542 0.37718 0.48411 0.81618 1.34898 1.36803 1.41989 1.62309 1.67231 1.96582 1.99038 2.33369 2.82439 3.10960 3.15014 3.22005 3.44905 3.46607 3.54977 3.57513 3.68963 3.73934 3.83719 3.86009 3.89216 3.92975 4.09397 4.10134 4.24615 4.33920 4.37745 4.40546 4.44584 4.45400 4.47919 4.49341 4.61108 4.71037 4.72229 4.73866 4.81807 4.87040 4.92931 5.01721 5.04432 5.24741 5.27922 5.34889 5.46191 5.60045 5.67035 5.80905 5.82846 5.88035 5.92059 6.13744 6.31558 6.38888 6.43466 6.61705 6.96630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.037 4.037 3 Si 0.679 3.321 4 C -0.150 4.150 5 C 0.071 3.929 6 N -0.466 5.466 7 C 0.091 3.909 8 C 0.494 3.506 9 O -0.510 6.510 10 N -0.716 5.716 11 C 0.128 3.872 12 H 0.123 0.877 13 C -0.137 4.137 14 C 0.058 3.942 15 H 0.106 0.894 16 O -0.300 6.300 17 C 0.127 3.873 18 C -0.153 4.153 19 C -0.081 4.081 20 C -0.158 4.158 21 C -0.080 4.080 22 C -0.209 4.209 23 C -0.168 4.168 24 C 0.109 3.891 25 C -0.127 4.127 26 C -0.097 4.097 27 C -0.146 4.146 28 C -0.065 4.065 29 C -0.086 4.086 30 H 0.375 0.625 31 H 0.072 0.928 32 H -0.259 1.259 33 H -0.255 1.255 34 H 0.169 0.831 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.404 0.596 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.115 0.885 48 H 0.125 0.875 49 H 0.123 0.877 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 1.759 2.844 4.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.147 4.147 3 Si 0.580 3.420 4 C -0.158 4.158 5 C -0.053 4.053 6 N -0.149 5.149 7 C -0.035 4.035 8 C 0.278 3.722 9 O -0.384 6.384 10 N -0.369 5.369 11 C 0.023 3.977 12 H 0.141 0.859 13 C -0.175 4.175 14 C 0.001 3.999 15 H 0.123 0.877 16 O -0.213 6.213 17 C 0.082 3.918 18 C -0.172 4.172 19 C -0.099 4.099 20 C -0.176 4.176 21 C -0.098 4.098 22 C -0.228 4.228 23 C -0.207 4.207 24 C 0.005 3.995 25 C -0.147 4.147 26 C -0.116 4.116 27 C -0.165 4.165 28 C -0.084 4.084 29 C -0.090 4.090 30 H 0.222 0.778 31 H 0.090 0.910 32 H -0.184 1.184 33 H -0.180 1.180 34 H 0.186 0.814 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.239 0.761 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.116 0.884 46 H 0.099 0.901 47 H 0.133 0.867 48 H 0.143 0.857 49 H 0.141 0.859 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.712 2.257 3.035 4.654 hybrid contribution -1.089 -0.128 -0.145 1.106 sum 1.623 2.129 2.890 3.940 Atomic orbital electron populations 1.86642 1.18352 1.79997 1.49379 1.24014 0.83774 1.09789 0.97172 0.95100 0.91796 0.74646 0.80496 1.19422 1.08667 0.91604 0.96063 1.21507 1.01047 0.93916 0.88873 1.43166 1.52638 1.04646 1.14484 1.21592 0.90673 1.05952 0.85266 1.21051 0.89539 0.77221 0.84426 1.90810 1.74511 1.45321 1.27749 1.45845 1.06566 1.72358 1.12161 1.22164 0.79287 0.96025 1.00269 0.85941 1.23589 0.96912 0.97405 0.99571 1.23811 0.96006 0.96895 0.83151 0.87655 1.86142 1.37014 1.69622 1.28547 1.19024 0.85887 0.92601 0.94252 1.20491 0.97823 1.03740 0.95132 1.21032 0.93933 0.95675 0.99223 1.21135 1.01179 1.02742 0.92558 1.21007 0.94750 0.96385 0.97655 1.21283 0.98774 1.04589 0.98108 1.24063 0.97516 0.98094 1.01039 1.18149 1.01289 0.85859 0.94219 1.19952 1.04969 0.89221 1.00599 1.20816 0.98405 0.97923 0.94490 1.20658 1.02478 0.96887 0.96439 1.20268 0.98029 0.90937 0.99122 1.18940 1.03319 0.92757 0.93966 0.77753 0.90996 1.18415 1.17960 0.81401 0.86360 0.85889 0.76063 0.89290 0.88065 0.85209 0.85235 0.85754 0.85668 0.85390 0.88374 0.90071 0.86726 0.85729 0.85939 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.44 12.86 -35.23 -0.45 -1.89 16 2 C -0.04 -0.06 3.05 36.01 0.11 0.05 16 3 Si 0.68 -0.01 30.80 -169.99 -5.24 -5.25 16 4 C -0.15 -0.54 5.61 -102.71 -0.58 -1.11 16 5 C 0.07 0.15 9.89 -16.73 -0.17 -0.02 16 6 N -0.47 -0.88 2.27 -115.71 -0.26 -1.14 16 7 C 0.09 -0.20 6.48 -5.19 -0.03 -0.23 16 8 C 0.49 -0.17 7.90 -10.98 -0.09 -0.26 16 9 O -0.51 -2.24 16.02 5.56 0.09 -2.15 16 10 N -0.72 2.19 5.35 -53.02 -0.28 1.90 16 11 C 0.13 -0.28 4.24 -67.12 -0.28 -0.57 16 12 H 0.12 -0.10 7.47 -51.93 -0.39 -0.49 16 13 C -0.14 0.42 7.66 -25.92 -0.20 0.22 16 14 C 0.06 -0.09 3.63 -25.92 -0.09 -0.18 16 15 H 0.11 -0.23 6.04 -51.93 -0.31 -0.54 16 16 O -0.30 -0.32 10.15 -19.44 -0.20 -0.52 16 17 C 0.13 0.21 6.68 -39.22 -0.26 -0.05 16 18 C -0.15 -0.20 9.99 -39.43 -0.39 -0.59 16 19 C -0.08 -0.04 10.04 -39.60 -0.40 -0.44 16 20 C -0.16 -0.07 10.04 -39.56 -0.40 -0.47 16 21 C -0.08 -0.04 10.04 -39.60 -0.40 -0.44 16 22 C -0.21 -0.17 9.01 -39.43 -0.36 -0.53 16 23 C -0.17 0.27 7.71 -25.92 -0.20 0.07 16 24 C 0.11 0.43 6.80 -83.99 -0.57 -0.14 16 25 C -0.13 -0.37 10.00 -39.43 -0.39 -0.76 16 26 C -0.10 -0.24 10.01 -39.54 -0.40 -0.64 16 27 C -0.15 -0.41 9.97 -39.95 -0.40 -0.81 16 28 C -0.06 -0.26 10.05 -39.65 -0.40 -0.65 16 29 C -0.09 -0.42 6.35 -105.14 -0.67 -1.08 16 30 H 0.38 -0.57 8.74 45.56 0.40 -0.17 16 31 H 0.07 0.05 7.96 -51.93 -0.41 -0.37 16 32 H -0.26 -0.47 7.11 56.52 0.40 -0.07 16 33 H -0.25 -0.52 7.04 56.52 0.40 -0.13 16 34 H 0.17 -0.10 6.31 -52.49 -0.33 -0.43 16 35 H 0.12 -0.50 8.14 -51.93 -0.42 -0.92 16 36 H 0.12 -0.65 8.11 -51.93 -0.42 -1.07 16 37 H 0.40 -2.39 8.73 -40.82 -0.36 -2.74 16 38 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 39 H 0.10 -0.36 8.12 -51.93 -0.42 -0.79 16 40 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 41 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 42 H 0.12 -0.16 8.06 -52.48 -0.42 -0.58 16 43 H 0.13 -0.16 8.06 -52.49 -0.42 -0.59 16 44 H 0.13 -0.10 5.95 -52.49 -0.31 -0.42 16 45 H 0.10 -0.13 8.14 -51.93 -0.42 -0.56 16 46 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 47 H 0.11 0.10 8.06 -52.48 -0.42 -0.32 16 48 H 0.12 0.03 8.06 -52.49 -0.42 -0.39 16 49 H 0.12 0.10 8.06 -52.48 -0.42 -0.33 16 50 H 0.12 0.32 8.06 -52.49 -0.42 -0.10 16 LS Contribution 421.21 15.07 6.35 6.35 Total: 0.00 -11.21 421.21 -13.39 -24.60 By element: Atomic # 1 Polarization: -6.43 SS G_CDS: -6.83 Total: -13.27 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -6.56 Total: -8.64 kcal Atomic # 7 Polarization: 1.31 SS G_CDS: -0.55 Total: 0.76 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.56 Total: -4.56 kcal Atomic # 14 Polarization: -0.01 SS G_CDS: -5.24 Total: -5.25 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -11.21 -13.39 -24.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12060300_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.264 kcal (2) G-P(sol) polarization free energy of solvation -11.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds