Wall clock time and date at job start Tue Mar 9 2021 13:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.46741 * 2 1 4 4 C 1.50700 * 109.47334 * 120.00086 * 2 1 3 5 5 C 1.34236 * 126.50190 * 255.35779 * 4 2 1 6 6 N 1.36831 * 109.93602 * 180.13834 * 5 4 2 7 7 C 1.46501 * 125.05734 * 179.81845 * 6 5 4 8 8 C 1.50706 * 109.46794 * 264.68868 * 7 6 5 9 9 O 1.21279 * 119.99982 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99640 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99919 * 180.02562 * 10 8 7 12 12 H 1.08999 * 112.90136 * 23.75473 * 11 10 8 13 13 C 1.53775 * 113.61476 * 155.00032 * 11 10 8 14 14 C 1.53782 * 87.07984 * 139.98316 * 13 11 10 15 15 H 1.09002 * 113.61170 * 89.11699 * 14 13 11 16 16 O 1.42894 * 113.61512 * 220.01722 * 14 13 11 17 17 C 1.35903 * 117.00275 * 202.11648 * 16 14 13 18 18 C 1.38729 * 120.05424 * 173.78437 * 17 16 14 19 19 C 1.38153 * 119.93769 * 179.69809 * 18 17 16 20 20 C 1.38261 * 120.05501 * 0.59524 * 19 18 17 21 21 C 1.38265 * 120.11457 * 359.67998 * 20 19 18 22 22 C 1.38146 * 120.05383 * 0.02562 * 21 20 19 23 23 C 1.53771 * 113.61563 * 252.50280 * 11 10 8 24 24 C 1.37686 * 109.87529 * 359.54663 * 6 5 4 25 25 C 1.39093 * 133.51491 * 180.28885 * 24 6 5 26 26 C 1.37782 * 119.77846 * 179.97438 * 25 24 6 27 27 C 1.38793 * 120.66808 * 359.97438 * 26 25 24 28 28 C 1.36652 * 120.52832 * 0.03924 * 27 26 25 29 29 C 1.39600 * 119.76482 * 359.96355 * 28 27 26 30 30 H 0.96696 * 114.00132 * 59.99980 * 1 2 3 31 31 H 1.09002 * 109.47132 * 240.00796 * 2 1 3 32 32 H 1.48496 * 110.00397 * 298.68315 * 3 2 1 33 33 H 1.48500 * 109.99681 * 60.00487 * 3 2 1 34 34 H 1.08002 * 125.02738 * 359.96915 * 5 4 2 35 35 H 1.09005 * 109.46905 * 144.69185 * 7 6 5 36 36 H 1.08994 * 109.47486 * 24.69469 * 7 6 5 37 37 H 0.97005 * 120.00421 * 0.02562 * 10 8 7 38 38 H 1.09003 * 113.61482 * 254.53313 * 13 11 10 39 39 H 1.08996 * 113.61334 * 25.43592 * 13 11 10 40 40 H 1.07998 * 120.03326 * 359.97438 * 18 17 16 41 41 H 1.08002 * 119.96804 * 180.31389 * 19 18 17 42 42 H 1.08007 * 119.94093 * 179.69666 * 20 19 18 43 43 H 1.08001 * 119.97517 * 180.02562 * 21 20 19 44 44 H 1.07998 * 120.02414 * 179.97438 * 22 21 20 45 45 H 1.09004 * 113.61470 * 334.56252 * 23 11 10 46 46 H 1.08997 * 113.62197 * 105.46835 * 23 11 10 47 47 H 1.08005 * 120.10640 * 359.97438 * 25 24 6 48 48 H 1.08002 * 119.66791 * 179.97438 * 26 25 24 49 49 H 1.08004 * 119.73634 * 180.02562 * 27 26 25 50 50 H 1.08002 * 120.12099 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4547 -0.1373 2.3257 6 7 2.8018 -1.0990 3.2350 7 6 3.4057 -0.8403 4.5444 8 6 4.9042 -0.9625 4.4394 9 8 5.4170 -1.2380 3.3755 10 7 5.6742 -0.7655 5.5278 11 6 7.1309 -0.8837 5.4256 12 1 7.4996 -0.7222 4.4127 13 6 7.8906 -0.0790 6.4933 14 6 8.8532 -1.2738 6.5962 15 1 9.6928 -1.2190 5.9032 16 8 9.2553 -1.5714 7.9347 17 6 10.4124 -2.2667 8.0913 18 6 10.9295 -2.4783 9.3611 19 6 12.1027 -3.1907 9.5180 20 6 12.7678 -3.6821 8.4099 21 6 12.2575 -3.4676 7.1429 22 6 11.0815 -2.7610 6.9811 23 6 7.6944 -2.1499 6.0918 24 6 2.4933 -2.3457 2.7385 25 6 2.6279 -3.6362 3.2395 26 6 2.2143 -4.7107 2.4827 27 6 1.6632 -4.5192 1.2233 28 6 1.5219 -3.2601 0.7115 29 6 1.9343 -2.1570 1.4612 30 1 -0.3933 0.4417 -0.7650 31 1 1.7923 -0.5137 -0.8901 32 1 1.5877 2.4586 -1.2241 33 1 1.5614 2.4678 1.2086 34 1 2.5852 0.9255 2.4669 35 1 3.0318 -1.5659 5.2667 36 1 3.1453 0.1660 4.8722 37 1 5.2639 -0.5455 6.3788 38 1 8.3583 0.8266 6.1068 39 1 7.3132 0.0960 7.4011 40 1 10.4130 -2.0902 10.2266 41 1 12.5029 -3.3601 10.5067 42 1 13.6875 -4.2346 8.5343 43 1 12.7787 -3.8528 6.2789 44 1 10.6836 -2.5934 5.9912 45 1 7.0634 -2.5412 6.8899 46 1 8.0038 -2.9164 5.3812 47 1 3.0552 -3.7955 4.2186 48 1 2.3200 -5.7120 2.8733 49 1 1.3436 -5.3723 0.6431 50 1 1.0926 -3.1187 -0.2694 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12060300_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:12 Heat of formation + Delta-G solvation = 34.504078 kcal Electronic energy + Delta-G solvation = -33142.314381 eV Core-core repulsion = 28682.615594 eV Total energy + Delta-G solvation = -4459.698786 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.54534 -41.64233 -40.65030 -39.33275 -38.10048 -37.76214 -37.39553 -34.55350 -33.99885 -31.95029 -31.45090 -30.71183 -30.29058 -29.08381 -26.88783 -26.35778 -25.35286 -23.83718 -23.56250 -23.10345 -22.48109 -21.68870 -20.89670 -20.52712 -19.50874 -18.54961 -18.36972 -18.21227 -17.72432 -17.44156 -16.79597 -16.61562 -16.52154 -16.42871 -16.18899 -15.81935 -15.67313 -15.53660 -15.16529 -14.88146 -14.87116 -14.73775 -14.47888 -14.37247 -14.13879 -14.08809 -13.64731 -13.56618 -13.52663 -13.27361 -12.78556 -12.70264 -12.62917 -12.56316 -12.50341 -12.35844 -12.31668 -12.08923 -11.73300 -11.68942 -11.40431 -11.12142 -10.55345 -10.35084 -10.17759 -9.97921 -9.18090 -9.16782 -8.64317 -4.88240 0.13341 0.36401 0.45996 0.63342 1.32836 1.40201 1.43197 1.59877 1.61166 1.93288 2.02218 2.41651 2.81295 2.93952 3.30082 3.37168 3.52218 3.58912 3.67058 3.69845 3.73215 3.77972 3.83800 3.89415 3.97542 4.00924 4.13002 4.18854 4.22328 4.26799 4.30638 4.40217 4.47527 4.52797 4.56306 4.57202 4.63526 4.70095 4.73842 4.78208 4.81182 4.88920 4.89278 4.99012 5.06412 5.13334 5.33421 5.41782 5.46799 5.50369 5.59443 5.65192 5.72239 5.74660 5.84073 6.16561 6.22757 6.43501 6.46592 6.67450 7.11313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.053 4.053 3 Si 0.762 3.238 4 C -0.181 4.181 5 C 0.073 3.927 6 N -0.466 5.466 7 C 0.086 3.914 8 C 0.496 3.504 9 O -0.564 6.564 10 N -0.700 5.700 11 C 0.130 3.870 12 H 0.108 0.892 13 C -0.123 4.123 14 C 0.051 3.949 15 H 0.109 0.891 16 O -0.311 6.311 17 C 0.112 3.888 18 C -0.170 4.170 19 C -0.087 4.087 20 C -0.168 4.168 21 C -0.090 4.090 22 C -0.219 4.219 23 C -0.165 4.165 24 C 0.091 3.909 25 C -0.134 4.134 26 C -0.107 4.107 27 C -0.153 4.153 28 C -0.087 4.087 29 C -0.117 4.117 30 H 0.389 0.611 31 H 0.073 0.927 32 H -0.284 1.284 33 H -0.278 1.278 34 H 0.194 0.806 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.421 0.579 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.148 0.852 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.133 0.867 48 H 0.146 0.854 49 H 0.139 0.861 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 2.471 4.214 5.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.161 4.161 3 Si 0.665 3.335 4 C -0.188 4.188 5 C -0.052 4.052 6 N -0.149 5.149 7 C -0.038 4.038 8 C 0.282 3.718 9 O -0.442 6.442 10 N -0.353 5.353 11 C 0.025 3.975 12 H 0.126 0.874 13 C -0.161 4.161 14 C -0.006 4.006 15 H 0.127 0.873 16 O -0.224 6.224 17 C 0.067 3.933 18 C -0.189 4.189 19 C -0.105 4.105 20 C -0.186 4.186 21 C -0.108 4.108 22 C -0.237 4.237 23 C -0.204 4.204 24 C -0.014 4.014 25 C -0.155 4.155 26 C -0.126 4.126 27 C -0.172 4.172 28 C -0.105 4.105 29 C -0.122 4.122 30 H 0.239 0.761 31 H 0.091 0.909 32 H -0.210 1.210 33 H -0.204 1.204 34 H 0.210 0.790 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.259 0.741 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.116 0.884 46 H 0.089 0.911 47 H 0.150 0.850 48 H 0.164 0.836 49 H 0.156 0.844 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.061 2.962 4.452 6.161 hybrid contribution -1.192 -0.392 -0.549 1.370 sum 1.868 2.570 3.903 5.033 Atomic orbital electron populations 1.86591 1.19171 1.80702 1.50531 1.24362 0.83371 1.11631 0.96762 0.94099 0.90445 0.71320 0.77664 1.19764 1.10100 0.91469 0.97457 1.21927 0.99840 0.95006 0.88439 1.43399 1.52079 1.03823 1.15591 1.21983 0.89046 1.08886 0.83916 1.21349 0.90340 0.76171 0.83985 1.90798 1.75503 1.48042 1.29808 1.45710 1.06133 1.71050 1.12397 1.22025 0.79759 0.95990 0.99771 0.87417 1.23530 0.96117 0.96941 0.99467 1.23989 0.96350 0.97793 0.82420 0.87303 1.86118 1.36887 1.69614 1.29824 1.19237 0.86313 0.93064 0.94688 1.20721 0.98437 1.04322 0.95385 1.21314 0.93685 0.95247 1.00234 1.21425 1.01814 1.02807 0.92564 1.21301 0.94794 0.96260 0.98443 1.21481 0.99032 1.04706 0.98516 1.24022 0.97616 0.98063 1.00747 1.18408 1.01655 0.87005 0.94381 1.20246 1.04748 0.89033 1.01429 1.21141 0.98107 0.98975 0.94381 1.20927 1.02282 0.97028 0.96947 1.20451 0.98978 0.91575 0.99512 1.19361 1.04126 0.93738 0.94943 0.76084 0.90862 1.21008 1.20385 0.78962 0.84016 0.82183 0.74065 0.88381 0.87010 0.84696 0.83473 0.84189 0.84146 0.84403 0.88417 0.91135 0.84958 0.83621 0.84357 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.72 12.86 -148.98 -1.92 -5.64 16 2 C -0.05 -0.24 3.05 71.24 0.22 -0.02 16 3 Si 0.76 -0.06 30.80 68.60 2.11 2.06 16 4 C -0.18 -1.50 5.61 -18.63 -0.10 -1.61 16 5 C 0.07 0.31 9.89 83.00 0.82 1.13 16 6 N -0.47 -1.66 2.27 -519.98 -1.18 -2.84 16 7 C 0.09 -0.51 6.48 85.63 0.56 0.05 16 8 C 0.50 -0.68 7.90 87.66 0.69 0.02 16 9 O -0.56 -5.32 16.02 -3.03 -0.05 -5.37 16 10 N -0.70 5.06 5.35 -440.05 -2.36 2.70 16 11 C 0.13 -0.61 4.24 45.51 0.19 -0.42 16 12 H 0.11 -0.10 7.47 -2.39 -0.02 -0.12 16 13 C -0.12 0.87 7.66 31.12 0.24 1.10 16 14 C 0.05 -0.15 3.63 31.12 0.11 -0.03 16 15 H 0.11 -0.43 6.04 -2.39 -0.01 -0.44 16 16 O -0.31 -0.74 10.15 -92.46 -0.94 -1.68 16 17 C 0.11 0.43 6.68 22.50 0.15 0.58 16 18 C -0.17 -0.52 9.99 22.37 0.22 -0.29 16 19 C -0.09 -0.08 10.04 22.25 0.22 0.14 16 20 C -0.17 -0.12 10.04 22.28 0.22 0.10 16 21 C -0.09 -0.10 10.04 22.25 0.22 0.12 16 22 C -0.22 -0.47 9.01 22.37 0.20 -0.27 16 23 C -0.17 0.50 7.71 31.12 0.24 0.74 16 24 C 0.09 0.79 6.80 39.03 0.27 1.06 16 25 C -0.13 -0.83 10.00 22.37 0.22 -0.61 16 26 C -0.11 -0.59 10.01 22.29 0.22 -0.36 16 27 C -0.15 -1.06 9.97 22.03 0.22 -0.84 16 28 C -0.09 -0.87 10.05 22.23 0.22 -0.64 16 29 C -0.12 -1.34 6.35 -20.20 -0.13 -1.47 16 30 H 0.39 -0.75 8.74 -74.06 -0.65 -1.40 16 31 H 0.07 0.23 7.96 -2.39 -0.02 0.21 16 32 H -0.28 -1.06 7.11 99.48 0.71 -0.35 16 33 H -0.28 -1.00 7.04 99.48 0.70 -0.30 16 34 H 0.19 -0.42 6.31 -2.91 -0.02 -0.44 16 35 H 0.14 -1.50 8.14 -2.38 -0.02 -1.52 16 36 H 0.16 -2.17 8.11 -2.39 -0.02 -2.19 16 37 H 0.42 -5.85 8.73 -92.70 -0.81 -6.66 16 38 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H 0.11 -0.99 8.12 -2.39 -0.02 -1.01 16 40 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 41 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 42 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 43 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 44 H 0.14 -0.14 5.95 -2.91 -0.02 -0.16 16 45 H 0.10 -0.28 8.14 -2.38 -0.02 -0.30 16 46 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 48 H 0.15 0.03 8.06 -2.91 -0.02 0.00 16 49 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 50 H 0.12 0.98 8.06 -2.91 -0.02 0.95 16 Total: 0.00 -28.30 421.21 0.47 -27.83 By element: Atomic # 1 Polarization: -15.08 SS G_CDS: -0.44 Total: -15.52 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.24 Total: -1.53 kcal Atomic # 7 Polarization: 3.39 SS G_CDS: -3.54 Total: -0.14 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -2.90 Total: -12.69 kcal Atomic # 14 Polarization: -0.06 SS G_CDS: 2.11 Total: 2.06 kcal Total: -28.30 0.47 -27.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12060300_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.332 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds