Wall clock time and date at job start Tue Mar 9 2021 13:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47250 * 2 1 4 4 C 1.52995 * 109.47137 * 239.99790 * 2 1 3 5 5 Si 1.86301 * 109.47034 * 119.99602 * 2 1 3 6 6 C 1.86290 * 109.47463 * 300.00143 * 5 2 1 7 7 C 1.86298 * 109.47232 * 179.97438 * 5 2 1 8 8 O 1.63101 * 109.47048 * 60.00304 * 5 2 1 9 9 C 1.42895 * 114.00119 * 179.97438 * 8 5 2 10 10 C 1.55165 * 110.72121 * 149.99877 * 9 8 5 11 11 C 1.54906 * 101.58314 * 153.86784 * 10 9 8 12 12 N 1.47427 * 104.83265 * 322.98938 * 11 10 9 13 13 C 1.34774 * 125.64890 * 203.86508 * 12 11 10 14 14 O 1.21569 * 120.00276 * 355.05595 * 13 12 11 15 15 C 1.47706 * 119.99857 * 175.05358 * 13 12 11 16 16 C 1.39616 * 120.15160 * 7.83049 * 15 13 12 17 17 C 1.38110 * 119.84757 * 179.74083 * 16 15 13 18 18 F 1.35098 * 119.92013 * 180.22805 * 17 16 15 19 19 C 1.38617 * 120.16467 * 0.53406 * 17 16 15 20 20 C 1.50699 * 119.84288 * 179.74207 * 19 17 16 21 21 O 1.42902 * 109.47158 * 74.97387 * 20 19 17 22 22 Si 1.86300 * 109.47355 * 314.97640 * 20 19 17 23 23 H 1.48497 * 109.46935 * 299.99971 * 22 20 19 24 24 H 1.48500 * 109.47232 * 59.99749 * 22 20 19 25 25 H 1.48494 * 109.47134 * 180.02562 * 22 20 19 26 26 C 1.38223 * 120.31574 * 359.71597 * 19 17 16 27 27 C 1.38276 * 120.14532 * 0.02562 * 26 19 17 28 28 F 1.35100 * 120.08371 * 179.97438 * 27 26 19 29 29 C 1.47022 * 108.70019 * 24.12635 * 12 11 10 30 30 H 1.08996 * 109.47224 * 300.00592 * 1 2 3 31 31 H 1.09003 * 109.47290 * 60.00038 * 1 2 3 32 32 H 1.08999 * 109.47383 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47092 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47086 * 299.99643 * 3 2 1 35 35 H 1.08996 * 109.47491 * 59.99571 * 3 2 1 36 36 H 1.09004 * 109.47440 * 299.99699 * 4 2 1 37 37 H 1.08997 * 109.47551 * 60.00092 * 4 2 1 38 38 H 1.09002 * 109.47377 * 180.02562 * 4 2 1 39 39 H 1.08997 * 109.47702 * 179.97438 * 6 5 2 40 40 H 1.09004 * 109.47314 * 300.00298 * 6 5 2 41 41 H 1.09002 * 109.47352 * 59.99858 * 6 5 2 42 42 H 1.09000 * 109.47665 * 300.00684 * 7 5 2 43 43 H 1.09007 * 109.46810 * 60.00129 * 7 5 2 44 44 H 1.08996 * 109.47529 * 179.97438 * 7 5 2 45 45 H 1.08998 * 110.64166 * 26.85761 * 9 8 5 46 46 H 1.09002 * 111.00226 * 35.79191 * 10 9 8 47 47 H 1.09000 * 111.00202 * 271.94249 * 10 9 8 48 48 H 1.09004 * 110.36590 * 204.15503 * 11 10 9 49 49 H 1.08998 * 110.46141 * 81.87412 * 11 10 9 50 50 H 1.07999 * 120.07712 * 359.97438 * 16 15 13 51 51 H 1.09001 * 109.47425 * 194.97053 * 20 19 17 52 52 H 0.96701 * 114.00256 * 179.97438 * 21 20 19 53 53 H 1.07999 * 119.92967 * 180.02562 * 26 19 17 54 54 H 1.09004 * 109.88280 * 118.36083 * 29 12 11 55 55 H 1.08994 * 109.88960 * 239.52224 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 14 2.1509 -0.8781 1.5212 6 6 1.5300 0.0001 3.0423 7 6 4.0139 -0.8788 1.5209 8 8 1.6073 -2.4159 1.5213 9 6 2.0294 -3.1815 2.6515 10 6 0.9753 -4.2636 3.0062 11 6 1.8510 -5.3338 3.7044 12 7 3.1223 -5.3269 2.9578 13 6 3.9971 -6.3496 2.8870 14 8 3.8100 -7.3561 3.5426 15 6 5.1833 -6.2475 2.0128 16 6 5.4905 -5.0385 1.3859 17 6 6.6042 -4.9486 0.5741 18 9 6.9054 -3.7781 -0.0296 19 6 7.4102 -6.0581 0.3720 20 6 8.6204 -5.9535 -0.5199 21 8 9.6555 -5.2435 0.1630 22 14 8.1657 -5.0406 -2.0790 23 1 7.0900 -5.7783 -2.7888 24 1 7.6865 -3.6783 -1.7331 25 1 9.3581 -4.9380 -2.9581 26 6 7.1095 -7.2599 0.9851 27 6 6.0007 -7.3630 1.8048 28 9 5.7077 -8.5383 2.4030 29 6 3.2805 -4.0174 2.3085 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 1.8929 -0.5139 3.9323 40 1 1.8932 1.0278 3.0422 41 1 0.4400 0.0001 3.0423 42 1 4.3770 -1.3929 0.6309 43 1 4.3776 0.1488 1.5206 44 1 4.3773 -1.3922 2.4111 45 1 2.2184 -2.5324 3.5065 46 1 0.5102 -4.6657 2.1062 47 1 0.2236 -3.8676 3.6891 48 1 1.3776 -6.3134 3.6382 49 1 2.0219 -5.0654 4.7469 50 1 4.8608 -4.1744 1.5385 51 1 8.9722 -6.9534 -0.7738 52 1 10.4668 -5.1385 -0.3527 53 1 7.7420 -8.1203 0.8237 54 1 4.1735 -3.5208 2.6882 55 1 3.3560 -4.1456 1.2287 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12102952_12360598.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:47:05 Heat of formation + Delta-G solvation = -179.409370 kcal Electronic energy + Delta-G solvation = -38339.502147 eV Core-core repulsion = 33330.657839 eV Total energy + Delta-G solvation = -5008.844308 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 401.179 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -50.42024 -50.13189 -41.81679 -40.04167 -39.20310 -37.64570 -36.82354 -36.71375 -33.93481 -31.74946 -31.47036 -30.03195 -29.19058 -28.90100 -27.91968 -27.81212 -27.34157 -25.10662 -24.41294 -22.97068 -22.29756 -21.35978 -20.38451 -19.46546 -18.71164 -18.58208 -18.44255 -18.28650 -17.81789 -17.27554 -16.85153 -16.76071 -16.49959 -16.22252 -15.96400 -15.79511 -15.50777 -15.36632 -15.01875 -14.87101 -14.73520 -14.65013 -14.54485 -14.50556 -14.33947 -14.07521 -13.94690 -13.86841 -13.52469 -13.36909 -13.34661 -13.20106 -13.07269 -12.99574 -12.93036 -12.90014 -12.74032 -12.41586 -12.34141 -12.24269 -12.10033 -11.72404 -11.64949 -11.58037 -11.41587 -11.20022 -11.09667 -10.73681 -10.33461 -10.27619 -10.05130 -10.02982 -9.73202 -0.84354 -0.31730 1.05084 1.30424 1.32182 1.44241 1.51247 1.70228 1.77060 1.93175 2.10371 2.16739 2.45934 2.76173 2.79020 3.01237 3.21621 3.23350 3.38376 3.61809 3.74115 3.78864 3.87724 4.06095 4.14479 4.14821 4.15603 4.18443 4.26258 4.35302 4.37765 4.44374 4.49457 4.53707 4.70464 4.73322 4.77377 4.78879 4.79370 4.82179 4.82794 4.84781 4.85370 4.85843 5.02772 5.06488 5.11558 5.11989 5.12507 5.24309 5.37508 5.37926 5.43873 5.46549 5.53272 5.63933 5.68960 6.10264 6.73156 6.76955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.383 4.383 3 C -0.142 4.142 4 C -0.139 4.139 5 Si 1.311 2.689 6 C -0.518 4.518 7 C -0.524 4.524 8 O -0.617 6.617 9 C 0.102 3.898 10 C -0.126 4.126 11 C 0.098 3.902 12 N -0.604 5.604 13 C 0.571 3.429 14 O -0.559 6.559 15 C -0.151 4.151 16 C -0.124 4.124 17 C 0.081 3.919 18 F -0.117 7.117 19 C -0.063 4.063 20 C -0.082 4.082 21 O -0.556 6.556 22 Si 0.952 3.048 23 H -0.263 1.263 24 H -0.245 1.245 25 H -0.248 1.248 26 C -0.105 4.105 27 C 0.133 3.867 28 F -0.125 7.125 29 C 0.044 3.956 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.116 0.884 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.200 0.800 51 H 0.115 0.885 52 H 0.404 0.596 53 H 0.183 0.817 54 H 0.105 0.895 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 4.546 -2.188 5.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.426 4.426 3 C -0.199 4.199 4 C -0.196 4.196 5 Si 1.441 2.559 6 C -0.620 4.620 7 C -0.626 4.626 8 O -0.575 6.575 9 C 0.044 3.956 10 C -0.164 4.164 11 C -0.023 4.023 12 N -0.338 5.338 13 C 0.360 3.640 14 O -0.439 6.439 15 C -0.155 4.155 16 C -0.141 4.141 17 C 0.061 3.939 18 F -0.096 7.096 19 C -0.064 4.064 20 C -0.192 4.192 21 O -0.366 6.366 22 Si 0.774 3.226 23 H -0.188 1.188 24 H -0.168 1.168 25 H -0.172 1.172 26 C -0.124 4.124 27 C 0.112 3.888 28 F -0.103 7.103 29 C -0.078 4.078 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.125 0.875 46 H 0.106 0.894 47 H 0.135 0.865 48 H 0.095 0.905 49 H 0.107 0.893 50 H 0.216 0.784 51 H 0.133 0.867 52 H 0.256 0.744 53 H 0.201 0.799 54 H 0.123 0.877 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.277 4.248 -2.299 4.838 hybrid contribution 0.666 0.070 -0.044 0.671 sum 0.943 4.318 -2.343 5.002 Atomic orbital electron populations 1.21553 0.94274 1.01898 1.01781 1.25956 1.00393 1.02951 1.13266 1.21614 1.01330 0.94840 1.02147 1.21563 1.01086 1.00108 0.96839 0.76312 0.62763 0.52725 0.64088 1.27101 1.07106 1.09860 1.17973 1.27240 1.24807 1.05621 1.04970 1.85464 1.78314 1.46416 1.47276 1.22692 0.92320 0.93024 0.87554 1.23033 0.97306 0.93765 1.02324 1.22525 0.82246 1.01030 0.96527 1.48195 1.21610 1.13382 1.50597 1.17737 0.82337 0.82261 0.81618 1.90861 1.76007 1.31238 1.45791 1.19776 0.98052 0.94497 1.03223 1.22743 0.97052 0.99593 0.94761 1.17588 0.96292 0.82380 0.97645 1.91612 1.92602 1.45338 1.80036 1.19648 0.96411 0.92127 0.98242 1.24681 0.88563 1.03661 1.02248 1.86467 1.26756 1.77832 1.45529 0.85888 0.81233 0.81182 0.74303 1.18758 1.16798 1.17185 1.21113 0.96031 0.99643 0.95598 1.17899 0.95079 0.81107 0.94699 1.91592 1.92820 1.44522 1.81356 1.23501 1.00565 0.83594 1.00151 0.92034 0.93623 0.92269 0.91760 0.93355 0.91791 0.92306 0.93598 0.92012 0.90579 0.90456 0.90918 0.90720 0.90130 0.90505 0.87492 0.89373 0.86537 0.90538 0.89293 0.78428 0.86682 0.74440 0.79923 0.87702 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.25 7.85 71.98 0.56 0.81 16 2 C -0.38 1.16 0.53 -10.80 -0.01 1.15 16 3 C -0.14 0.44 7.85 71.98 0.56 1.01 16 4 C -0.14 0.24 7.85 71.98 0.56 0.80 16 5 Si 1.31 -8.28 8.13 68.60 0.56 -7.72 16 6 C -0.52 3.01 8.59 113.37 0.97 3.99 16 7 C -0.52 3.17 8.33 113.37 0.94 4.12 16 8 O -0.62 2.96 8.31 -148.98 -1.24 1.72 16 9 C 0.10 -0.64 2.84 31.78 0.09 -0.55 16 10 C -0.13 0.74 6.81 31.99 0.22 0.96 16 11 C 0.10 -0.15 6.89 86.85 0.60 0.45 16 12 N -0.60 -1.08 3.33 -826.88 -2.75 -3.83 16 13 C 0.57 4.96 7.80 86.75 0.68 5.64 16 14 O -0.56 -9.41 15.68 -3.93 -0.06 -9.48 16 15 C -0.15 -0.85 5.88 -20.06 -0.12 -0.97 16 16 C -0.12 -0.12 8.57 22.57 0.19 0.07 16 17 C 0.08 0.15 6.65 22.33 0.15 0.30 16 18 F -0.12 -0.32 12.80 44.97 0.58 0.25 16 19 C -0.06 -0.03 4.82 -19.78 -0.10 -0.13 16 20 C -0.08 0.31 2.79 71.24 0.20 0.51 16 21 O -0.56 1.46 12.86 -148.98 -1.92 -0.46 16 22 Si 0.95 -2.04 26.08 68.60 1.79 -0.25 16 23 H -0.26 -0.05 7.11 99.48 0.71 0.65 16 24 H -0.24 -0.36 5.28 99.48 0.53 0.17 16 25 H -0.25 0.71 7.11 99.48 0.71 1.42 16 26 C -0.11 -0.05 9.63 22.28 0.21 0.16 16 27 C 0.13 0.83 7.28 22.67 0.16 1.00 16 28 F -0.12 -1.43 15.58 44.97 0.70 -0.73 16 29 C 0.04 -0.18 4.03 86.73 0.35 0.17 16 30 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 31 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.06 -0.10 7.96 -2.39 -0.02 -0.12 16 33 H 0.06 -0.30 7.79 -2.39 -0.02 -0.31 16 34 H 0.05 -0.06 8.14 -2.38 -0.02 -0.08 16 35 H 0.06 -0.30 7.79 -2.39 -0.02 -0.32 16 36 H 0.06 -0.09 7.97 -2.38 -0.02 -0.11 16 37 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 39 H 0.08 -0.56 7.14 -2.39 -0.02 -0.58 16 40 H 0.08 -0.44 7.79 -2.38 -0.02 -0.45 16 41 H 0.07 -0.36 7.79 -2.39 -0.02 -0.38 16 42 H 0.07 -0.41 7.79 -2.39 -0.02 -0.43 16 43 H 0.08 -0.48 7.79 -2.38 -0.02 -0.50 16 44 H 0.08 -0.61 7.00 -2.39 -0.02 -0.62 16 45 H 0.11 -1.15 6.23 -2.39 -0.01 -1.17 16 46 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 47 H 0.12 -1.13 8.14 -2.39 -0.02 -1.15 16 48 H 0.08 0.10 8.09 -2.38 -0.02 0.08 16 49 H 0.09 -0.33 8.14 -2.39 -0.02 -0.34 16 50 H 0.20 -0.74 2.77 -7.35 -0.02 -0.76 16 51 H 0.12 -1.11 7.76 -2.39 -0.02 -1.13 16 52 H 0.40 -4.71 8.74 -74.06 -0.65 -5.35 16 53 H 0.18 -0.97 7.99 -2.91 -0.02 -0.99 16 54 H 0.11 -0.80 5.89 -2.39 -0.01 -0.81 16 55 H 0.10 -0.49 6.59 -2.39 -0.02 -0.51 16 Total: 0.00 -20.39 432.56 4.73 -15.66 By element: Atomic # 1 Polarization: -15.48 SS G_CDS: 0.83 Total: -14.66 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 6.25 Total: 19.49 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -2.75 Total: -3.83 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -3.22 Total: -8.22 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 1.28 Total: -0.48 kcal Atomic # 14 Polarization: -10.32 SS G_CDS: 2.35 Total: -7.97 kcal Total: -20.39 4.73 -15.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12102952_12360598.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.749 kcal (2) G-P(sol) polarization free energy of solvation -20.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds