Wall clock time and date at job start Tue Mar 9 2021 14:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33815 * 122.44586 * 2 1 4 4 C 1.50701 * 124.52554 * 0.02562 * 3 2 1 5 5 O 1.42899 * 109.47334 * 113.44976 * 4 3 2 6 6 Si 1.86296 * 109.47266 * 233.45413 * 4 3 2 7 7 H 1.48501 * 109.46984 * 299.99633 * 6 4 3 8 8 H 1.48491 * 109.47377 * 59.99622 * 6 4 3 9 9 H 1.48497 * 109.47473 * 180.02562 * 6 4 3 10 10 S 1.70622 * 110.95395 * 179.73167 * 3 2 1 11 11 C 1.75833 * 91.56150 * 0.24707 * 10 3 2 12 12 C 1.46585 * 125.45458 * 180.02562 * 11 10 3 13 13 O 1.21700 * 119.99551 * 179.97438 * 12 11 10 14 14 N 1.34769 * 120.00048 * 359.96891 * 12 11 10 15 15 C 1.47023 * 125.65081 * 0.03215 * 14 12 11 16 16 C 1.54325 * 107.27017 * 181.01979 * 15 14 12 17 17 C 1.55158 * 102.94623 * 22.19182 * 16 15 14 18 18 O 1.42897 * 111.00558 * 206.38598 * 17 16 15 19 19 Si 1.63095 * 113.99908 * 209.99688 * 18 17 16 20 20 C 1.86301 * 109.47102 * 300.00047 * 19 18 17 21 21 C 1.86301 * 109.47202 * 60.00224 * 19 18 17 22 22 C 1.86302 * 109.47079 * 179.97438 * 19 18 17 23 23 C 1.52999 * 109.47093 * 60.00327 * 22 19 18 24 24 C 1.53001 * 109.47148 * 180.02562 * 22 19 18 25 25 C 1.52996 * 109.47130 * 300.00188 * 22 19 18 26 26 C 1.47425 * 125.64881 * 179.71668 * 14 12 11 27 27 C 1.36648 * 109.08297 * 359.97438 * 11 10 3 28 28 H 1.09005 * 109.47243 * 85.01032 * 1 2 3 29 29 H 1.09008 * 109.46864 * 205.00840 * 1 2 3 30 30 H 1.09002 * 109.47464 * 325.00679 * 1 2 3 31 31 H 1.09003 * 109.46668 * 353.45259 * 4 3 2 32 32 H 0.96702 * 113.99908 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.87848 * 300.43419 * 15 14 12 34 34 H 1.08999 * 109.88680 * 61.44742 * 15 14 12 35 35 H 1.09008 * 110.71952 * 140.55500 * 16 15 14 36 36 H 1.09000 * 110.71806 * 263.82630 * 16 15 14 37 37 H 1.08998 * 111.00470 * 82.56783 * 17 16 15 38 38 H 1.08993 * 109.47225 * 60.00130 * 20 19 18 39 39 H 1.09005 * 109.46885 * 179.97438 * 20 19 18 40 40 H 1.08995 * 109.47031 * 299.99899 * 20 19 18 41 41 H 1.09002 * 109.47306 * 59.99475 * 21 19 18 42 42 H 1.08999 * 109.46894 * 180.02562 * 21 19 18 43 43 H 1.09006 * 109.46748 * 299.99979 * 21 19 18 44 44 H 1.08997 * 109.47345 * 59.99693 * 23 22 19 45 45 H 1.09004 * 109.47396 * 180.02562 * 23 22 19 46 46 H 1.09005 * 109.47127 * 299.99911 * 23 22 19 47 47 H 1.08995 * 109.47188 * 59.99875 * 24 22 19 48 48 H 1.09003 * 109.47021 * 180.02562 * 24 22 19 49 49 H 1.08997 * 109.46886 * 300.00059 * 24 22 19 50 50 H 1.09000 * 109.47173 * 59.99642 * 25 22 19 51 51 H 1.09000 * 109.47459 * 179.97438 * 25 22 19 52 52 H 1.08997 * 109.47393 * 299.99695 * 25 22 19 53 53 H 1.08998 * 110.36945 * 274.75115 * 26 14 12 54 54 H 1.09004 * 110.36344 * 37.06934 * 26 14 12 55 55 H 1.08000 * 123.34966 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6354 2.5162 0.0006 5 8 1.9429 3.1640 1.2366 6 14 2.3544 3.4972 -1.4105 7 1 3.8282 3.5858 -1.2514 8 1 2.0349 2.8240 -2.6949 9 1 1.7740 4.8640 -1.4097 10 16 3.8969 0.7893 0.0075 11 6 3.5937 -0.9426 0.0030 12 6 4.6232 -1.9861 0.0067 13 8 4.3003 -3.1595 0.0036 14 7 5.9273 -1.6460 0.0135 15 6 6.4550 -0.2738 0.0185 16 6 7.9948 -0.3750 -0.0007 17 6 8.2429 -1.7902 -0.5864 18 8 9.4961 -2.3152 -0.1441 19 14 10.2003 -3.3339 -1.2053 20 6 9.0741 -4.7857 -1.5134 21 6 10.5143 -2.4401 -2.8095 22 6 11.8175 -3.9391 -0.5057 23 6 11.5603 -4.6731 0.8119 24 6 12.4784 -4.8943 -1.5016 25 6 12.7420 -2.7466 -0.2531 26 6 7.0609 -2.5885 0.0238 27 6 2.2446 -1.1600 -0.0032 28 1 -0.3634 0.0894 -1.0238 29 1 -0.3633 -0.9314 0.4345 30 1 -0.3634 0.8419 0.5893 31 1 0.5536 2.4511 -0.1162 32 1 1.5934 4.0629 1.3071 33 1 6.1076 0.2601 -0.8660 34 1 6.1266 0.2465 0.9182 35 1 8.4236 0.3906 -0.6473 36 1 8.3988 -0.2992 1.0089 37 1 8.1894 -1.7774 -1.6750 38 1 8.1283 -4.4313 -1.9230 39 1 9.5446 -5.4663 -2.2231 40 1 8.8905 -5.3086 -0.5749 41 1 11.1731 -1.5906 -2.6292 42 1 10.9845 -3.1211 -3.5188 43 1 9.5683 -2.0856 -3.2190 44 1 10.9015 -5.5227 0.6320 45 1 12.5065 -5.0269 1.2215 46 1 11.0896 -3.9923 1.5212 47 1 12.6616 -4.3711 -2.4400 48 1 13.4243 -5.2488 -1.0920 49 1 11.8198 -5.7439 -1.6819 50 1 12.2714 -2.0658 0.4561 51 1 13.6880 -3.1006 0.1566 52 1 12.9253 -2.2237 -1.1918 53 1 7.2923 -2.8925 1.0446 54 1 6.8351 -3.4601 -0.5906 55 1 1.8020 -2.1451 -0.0074 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12102952_6739946.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:31:04 Heat of formation + Delta-G solvation = -128.068749 kcal Electronic energy + Delta-G solvation = -32201.241903 eV Core-core repulsion = 28067.146470 eV Total energy + Delta-G solvation = -4134.095433 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 385.170 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.38448 -39.94093 -39.01956 -37.49145 -36.84877 -36.77210 -32.85404 -31.77944 -30.14695 -29.88570 -29.26185 -28.98721 -27.84622 -27.37802 -26.69727 -24.84523 -23.63726 -22.31883 -21.09976 -20.40512 -19.62691 -19.26973 -18.60769 -18.41275 -17.36769 -17.10811 -16.76550 -16.14787 -15.97936 -15.77087 -15.38611 -15.35077 -14.94545 -14.87041 -14.76428 -14.62974 -14.55309 -14.46860 -14.20057 -14.10222 -13.91029 -13.59877 -13.42686 -13.33548 -13.25579 -13.16295 -13.11383 -13.04473 -12.97514 -12.94621 -12.90654 -12.56296 -12.39557 -12.23601 -12.15248 -12.10164 -11.76845 -11.67556 -11.62462 -11.54096 -11.38215 -11.22520 -10.56255 -10.41667 -10.08184 -10.05656 -9.59834 -9.40807 -0.70293 0.32546 0.79657 1.00512 1.20719 1.25301 1.41381 1.48366 1.74457 1.79257 1.89086 1.97978 2.05991 2.43793 3.17583 3.30252 3.45051 3.62292 3.84811 3.85236 4.00699 4.08073 4.10263 4.13090 4.13835 4.25539 4.40320 4.42515 4.46429 4.52875 4.54084 4.59319 4.70466 4.71994 4.74718 4.77092 4.79003 4.82461 4.82938 4.85156 4.93754 4.97226 5.00603 5.01171 5.04888 5.10236 5.11138 5.22269 5.29980 5.35432 5.40566 5.41933 5.44568 5.52682 5.58225 5.63493 6.14424 6.76292 6.80459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.108 4.108 3 C -0.216 4.216 4 C -0.049 4.049 5 O -0.559 6.559 6 Si 0.940 3.060 7 H -0.244 1.244 8 H -0.259 1.259 9 H -0.230 1.230 10 S 0.254 5.746 11 C -0.288 4.288 12 C 0.602 3.398 13 O -0.571 6.571 14 N -0.613 5.613 15 C 0.074 3.926 16 C -0.121 4.121 17 C 0.102 3.898 18 O -0.613 6.613 19 Si 1.313 2.687 20 C -0.525 4.525 21 C -0.514 4.514 22 C -0.379 4.379 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.137 4.137 26 C 0.076 3.924 27 C -0.054 4.054 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.403 0.597 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.051 0.949 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.047 0.953 52 H 0.063 0.937 53 H 0.082 0.918 54 H 0.078 0.922 55 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 7.472 -2.313 7.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C -0.335 4.335 4 C -0.160 4.160 5 O -0.368 6.368 6 Si 0.759 3.241 7 H -0.167 1.167 8 H -0.183 1.183 9 H -0.152 1.152 10 S 0.526 5.474 11 C -0.408 4.408 12 C 0.392 3.608 13 O -0.453 6.453 14 N -0.346 5.346 15 C -0.049 4.049 16 C -0.158 4.158 17 C 0.044 3.956 18 O -0.571 6.571 19 Si 1.443 2.557 20 C -0.625 4.625 21 C -0.617 4.617 22 C -0.422 4.422 23 C -0.196 4.196 24 C -0.199 4.199 25 C -0.194 4.194 26 C -0.047 4.047 27 C -0.089 4.089 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.254 0.746 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.067 0.933 52 H 0.082 0.918 53 H 0.100 0.900 54 H 0.097 0.903 55 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.017 7.814 -2.603 8.479 hybrid contribution -1.733 -1.557 0.077 2.332 sum 0.283 6.256 -2.526 6.753 Atomic orbital electron populations 1.20670 0.87675 1.03915 1.03605 1.18830 0.99232 0.90275 1.03734 1.24020 1.00545 0.99286 1.09692 1.24214 1.03990 0.91453 0.96370 1.86477 1.80552 1.34288 1.35528 0.85831 0.81547 0.80317 0.76360 1.16712 1.18300 1.15224 1.83054 1.01931 0.95502 1.66952 1.24430 0.97692 0.98155 1.20487 1.16822 0.80949 0.87103 0.75961 1.90823 1.81607 1.19945 1.52921 1.48167 1.04312 1.09536 1.72630 1.22542 0.95883 0.82407 1.04044 1.22864 0.91599 0.96274 1.05105 1.22749 0.80990 0.93774 0.98082 1.85410 1.35544 1.70858 1.65310 0.76313 0.62458 0.59087 0.57859 1.27315 1.11710 1.18275 1.05228 1.27044 1.05543 1.09527 1.19558 1.25867 1.14892 1.00446 1.00982 1.21557 1.01504 1.00073 0.96434 1.21614 1.00693 0.98940 0.98677 1.21548 0.98951 0.96917 1.01987 1.22968 0.85358 0.93290 1.03044 1.20763 0.91063 1.00393 0.96663 0.89616 0.90835 0.90086 0.87565 0.74571 0.88939 0.89206 0.86172 0.88103 0.88576 0.91788 0.90314 0.91420 0.90286 0.90309 0.90993 0.92521 0.93217 0.92317 0.91585 0.93006 0.92160 0.92123 0.93350 0.91802 0.90004 0.90329 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.22 9.48 71.24 0.68 0.89 16 2 C -0.11 -0.32 5.78 -21.05 -0.12 -0.44 16 3 C -0.22 -0.43 4.85 24.68 0.12 -0.31 16 4 C -0.05 0.15 2.76 71.24 0.20 0.35 16 5 O -0.56 1.65 12.86 -148.98 -1.92 -0.27 16 6 Si 0.94 -3.50 27.43 68.60 1.88 -1.62 16 7 H -0.24 0.56 7.11 99.48 0.71 1.26 16 8 H -0.26 0.21 7.11 99.48 0.71 0.92 16 9 H -0.23 1.19 7.11 99.48 0.71 1.90 16 10 S 0.25 0.46 17.12 -56.49 -0.97 -0.51 16 11 C -0.29 -2.10 6.38 24.08 0.15 -1.94 16 12 C 0.60 6.54 7.82 86.42 0.68 7.22 16 13 O -0.57 -10.56 17.09 -4.35 -0.07 -10.64 16 14 N -0.61 -2.95 3.32 -816.16 -2.71 -5.66 16 15 C 0.07 -0.17 5.17 86.73 0.45 0.28 16 16 C -0.12 0.66 6.68 31.78 0.21 0.87 16 17 C 0.10 -0.22 2.92 32.06 0.09 -0.13 16 18 O -0.61 0.85 8.39 -148.98 -1.25 -0.40 16 19 Si 1.31 -3.69 8.15 68.60 0.56 -3.14 16 20 C -0.52 -0.06 8.25 113.37 0.93 0.87 16 21 C -0.51 1.79 8.59 113.37 0.97 2.77 16 22 C -0.38 0.40 0.53 -10.79 -0.01 0.40 16 23 C -0.14 -0.08 7.85 71.98 0.56 0.49 16 24 C -0.14 0.20 7.85 71.98 0.56 0.77 16 25 C -0.14 0.15 7.84 71.98 0.56 0.71 16 26 C 0.08 0.25 6.31 86.93 0.55 0.79 16 27 C -0.05 -0.36 9.78 21.72 0.21 -0.14 16 28 H 0.09 -0.39 8.14 -2.38 -0.02 -0.41 16 29 H 0.07 -0.17 8.11 -2.38 -0.02 -0.19 16 30 H 0.08 -0.33 6.98 -2.39 -0.02 -0.35 16 31 H 0.11 -0.76 6.24 -2.39 -0.01 -0.78 16 32 H 0.40 -4.96 8.74 -74.06 -0.65 -5.60 16 33 H 0.09 -0.45 6.83 -2.39 -0.02 -0.46 16 34 H 0.09 -0.29 6.97 -2.39 -0.02 -0.31 16 35 H 0.12 -1.23 8.14 -2.38 -0.02 -1.25 16 36 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.10 -0.51 6.25 -2.39 -0.01 -0.52 16 38 H 0.06 0.05 6.92 -2.39 -0.02 0.04 16 39 H 0.08 -0.06 7.79 -2.38 -0.02 -0.08 16 40 H 0.07 0.10 7.79 -2.39 -0.02 0.08 16 41 H 0.08 -0.31 7.79 -2.39 -0.02 -0.33 16 42 H 0.08 -0.29 7.79 -2.39 -0.02 -0.30 16 43 H 0.07 -0.30 7.15 -2.38 -0.02 -0.32 16 44 H 0.06 0.00 7.80 -2.39 -0.02 -0.01 16 45 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.06 0.05 7.97 -2.38 -0.02 0.03 16 47 H 0.07 -0.22 7.79 -2.39 -0.02 -0.24 16 48 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 49 H 0.06 -0.13 7.80 -2.39 -0.02 -0.15 16 50 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 51 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 52 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 53 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 54 H 0.08 0.41 6.71 -2.38 -0.02 0.40 16 55 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 Total: 0.00 -18.36 438.75 3.31 -15.05 By element: Atomic # 1 Polarization: -7.24 SS G_CDS: 0.98 Total: -6.26 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 6.81 Total: 13.44 kcal Atomic # 7 Polarization: -2.95 SS G_CDS: -2.71 Total: -5.66 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -3.24 Total: -11.30 kcal Atomic # 14 Polarization: -7.20 SS G_CDS: 2.44 Total: -4.76 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -0.97 Total: -0.51 kcal Total: -18.36 3.31 -15.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12102952_6739946.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.023 kcal (2) G-P(sol) polarization free energy of solvation -18.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds