Wall clock time and date at job start Tue Mar 9 2021 14:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86297 * 109.47113 * 2 1 4 4 C 1.50701 * 109.47207 * 120.00172 * 2 1 3 5 5 C 1.38189 * 119.84055 * 14.99454 * 4 2 1 6 6 C 1.38312 * 120.14068 * 179.74576 * 5 4 2 7 7 F 1.35106 * 120.07925 * 180.27806 * 6 5 4 8 8 C 1.39800 * 119.83722 * 0.25895 * 6 5 4 9 9 C 1.47694 * 120.15745 * 180.02562 * 8 6 5 10 10 O 1.21566 * 120.00018 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99865 * 180.02562 * 9 8 6 12 12 C 1.46505 * 119.99958 * 180.02562 * 11 9 8 13 13 H 1.08991 * 112.84930 * 46.03778 * 12 11 9 14 14 C 1.53786 * 113.61456 * 177.34425 * 12 11 9 15 15 C 1.53787 * 87.07888 * 89.11207 * 14 12 11 16 16 H 1.09001 * 113.61008 * 139.98160 * 15 14 12 17 17 N 1.46496 * 113.61199 * 270.88288 * 15 14 12 18 18 C 1.34773 * 119.99927 * 255.63979 * 17 15 14 19 19 O 1.21518 * 120.00158 * 0.02562 * 18 17 15 20 20 O 1.34638 * 120.00258 * 180.02562 * 18 17 15 21 21 C 1.45208 * 117.00153 * 179.97438 * 20 18 17 22 22 C 1.50696 * 109.46811 * 180.02562 * 21 20 18 23 23 C 1.38242 * 119.99922 * 269.72441 * 22 21 20 24 24 C 1.38230 * 120.00206 * 179.76752 * 23 22 21 25 25 C 1.38246 * 119.99724 * 0.48907 * 24 23 22 26 26 C 1.38236 * 120.00105 * 359.78858 * 25 24 23 27 27 C 1.38230 * 120.00233 * 90.00610 * 22 21 20 28 28 C 1.53784 * 113.61079 * 274.84198 * 12 11 9 29 29 C 1.39661 * 119.68429 * 0.02562 * 8 6 5 30 30 C 1.38058 * 119.85633 * 359.97438 * 29 8 6 31 31 F 1.35101 * 119.91976 * 180.02562 * 30 29 8 32 32 H 0.96701 * 114.00328 * 59.99783 * 1 2 3 33 33 H 1.08995 * 109.46776 * 240.00230 * 2 1 3 34 34 H 1.48502 * 110.00321 * 60.00044 * 3 2 1 35 35 H 1.48496 * 110.00128 * 181.31936 * 3 2 1 36 36 H 1.07999 * 119.92837 * 0.02859 * 5 4 2 37 37 H 0.97001 * 119.99990 * 359.97438 * 11 9 8 38 38 H 1.08995 * 113.61131 * 203.66045 * 14 12 11 39 39 H 1.09000 * 113.61191 * 334.56821 * 14 12 11 40 40 H 0.97003 * 120.00062 * 75.64972 * 17 15 14 41 41 H 1.08998 * 109.46763 * 300.00518 * 21 20 18 42 42 H 1.09004 * 109.46628 * 60.00434 * 21 20 18 43 43 H 1.08000 * 119.99599 * 0.02562 * 23 22 21 44 44 H 1.07995 * 120.00781 * 180.25506 * 24 23 22 45 45 H 1.07994 * 120.00027 * 179.76509 * 25 24 23 46 46 H 1.07992 * 119.99950 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.00123 * 359.97438 * 27 22 21 48 48 H 1.09002 * 113.61081 * 25.42972 * 28 12 11 49 49 H 1.08994 * 113.60975 * 156.25231 * 28 12 11 50 50 H 1.08007 * 120.06973 * 179.97438 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.0689 -1.4962 1.9710 6 6 1.5247 -2.1552 3.0984 7 9 0.6818 -2.9276 3.8184 8 6 2.8597 -2.0205 3.4909 9 6 3.3540 -2.7215 4.6932 10 8 2.5995 -3.4180 5.3439 11 7 4.6415 -2.5889 5.0689 12 6 5.1320 -3.2847 6.2612 13 1 4.8167 -4.3272 6.3026 14 6 6.6349 -3.0830 6.5176 15 6 6.2482 -1.8401 7.3366 16 1 6.8353 -1.7170 8.2467 17 7 6.1679 -0.6137 6.5394 18 6 7.1514 0.3047 6.6149 19 8 8.1050 0.1153 7.3439 20 8 7.0774 1.4321 5.8826 21 6 8.1721 2.3769 6.0145 22 6 7.9170 3.5682 5.1275 23 6 8.3824 3.5730 3.8258 24 6 8.1443 4.6637 3.0107 25 6 7.4495 5.7539 3.5003 26 6 6.9891 5.7515 4.8038 27 6 7.2227 4.6585 5.6173 28 6 4.8856 -2.5141 7.5691 29 6 3.7237 -1.2198 2.7405 30 6 3.2552 -0.5678 1.6174 31 9 4.0900 0.2066 0.8904 32 1 -0.3934 0.4417 -0.7650 33 1 1.7922 -0.5138 -0.8900 34 1 1.5615 2.4679 1.2085 35 1 3.5345 1.7703 -0.0321 36 1 0.0380 -1.5995 1.6663 37 1 5.2436 -2.0334 4.5494 38 1 7.0863 -3.8758 7.1140 39 1 7.2044 -2.8527 5.6172 40 1 5.4068 -0.4626 5.9573 41 1 8.2457 2.7052 7.0512 42 1 9.1046 1.8961 5.7185 43 1 8.9285 2.7228 3.4445 44 1 8.5043 4.6658 1.9925 45 1 7.2667 6.6076 2.8647 46 1 6.4467 6.6033 5.1864 47 1 6.8627 4.6565 6.6355 48 1 4.0430 -1.8246 7.5174 49 1 4.8574 -3.1517 8.4527 50 1 4.7562 -1.1110 3.0383 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12109458_12360598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:37:16 Heat of formation + Delta-G solvation = -126.179262 kcal Electronic energy + Delta-G solvation = -40611.770220 eV Core-core repulsion = 35015.739678 eV Total energy + Delta-G solvation = -5596.030542 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.142 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -50.58184 -49.98106 -42.14015 -41.32907 -40.50877 -40.06095 -39.29524 -37.77691 -37.36735 -35.18119 -34.29138 -33.17478 -32.80737 -31.95342 -31.50645 -28.24114 -27.69644 -27.03934 -25.84024 -24.37387 -23.89248 -23.64348 -22.85328 -22.27724 -21.77124 -21.12892 -19.87740 -19.70253 -19.02877 -18.49050 -18.25693 -18.09033 -17.74814 -17.59696 -17.48087 -17.18964 -17.05784 -16.79992 -16.49406 -16.32327 -16.15051 -16.04573 -15.97306 -15.78430 -15.73004 -15.47701 -15.38987 -14.72559 -14.68983 -14.51993 -14.31321 -14.10751 -13.98803 -13.65867 -13.64820 -13.58282 -13.37729 -13.14581 -13.11572 -13.06764 -12.61264 -12.29073 -12.19149 -12.14619 -11.72913 -11.67859 -11.66770 -11.63017 -11.14847 -11.11679 -10.47836 -10.28120 -10.22515 -9.96071 -9.94435 -9.76918 -5.08013 -0.84159 -0.38089 0.05017 0.36516 1.02104 1.14236 1.46002 1.56774 1.68817 1.74606 1.88564 2.23155 2.57367 2.68349 2.75870 2.84283 3.06955 3.11390 3.13587 3.28417 3.42222 3.53716 3.58926 3.66675 3.72813 3.75351 3.89912 3.96714 4.02618 4.10434 4.14830 4.19257 4.24616 4.28092 4.42694 4.45733 4.49254 4.50754 4.58862 4.59297 4.61878 4.64087 4.74220 4.76536 4.79059 4.89096 4.98511 5.08006 5.26043 5.33456 5.39070 5.40986 5.47592 5.48446 5.91882 6.11816 6.22219 6.33306 6.91530 7.22204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.076 4.076 3 Si 0.682 3.318 4 C -0.053 4.053 5 C -0.110 4.110 6 C 0.162 3.838 7 F -0.104 7.104 8 C -0.155 4.155 9 C 0.564 3.436 10 O -0.505 6.505 11 N -0.714 5.714 12 C 0.120 3.880 13 H 0.104 0.896 14 C -0.153 4.153 15 C 0.134 3.866 16 H 0.113 0.887 17 N -0.696 5.696 18 C 0.649 3.351 19 O -0.564 6.564 20 O -0.366 6.366 21 C 0.131 3.869 22 C -0.103 4.103 23 C -0.093 4.093 24 C -0.123 4.123 25 C -0.106 4.106 26 C -0.123 4.123 27 C -0.093 4.093 28 C -0.153 4.153 29 C -0.086 4.086 30 C 0.066 3.934 31 F -0.113 7.113 32 H 0.392 0.608 33 H 0.093 0.907 34 H -0.256 1.256 35 H -0.225 1.225 36 H 0.167 0.833 37 H 0.399 0.601 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.403 0.597 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.125 0.875 48 H 0.081 0.919 49 H 0.115 0.885 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 3.252 -6.010 6.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.185 4.185 3 Si 0.580 3.420 4 C -0.054 4.054 5 C -0.129 4.129 6 C 0.141 3.859 7 F -0.082 7.082 8 C -0.159 4.159 9 C 0.350 3.650 10 O -0.380 6.380 11 N -0.368 5.368 12 C 0.015 3.985 13 H 0.122 0.878 14 C -0.193 4.193 15 C 0.029 3.971 16 H 0.131 0.869 17 N -0.355 5.355 18 C 0.402 3.598 19 O -0.452 6.452 20 O -0.280 6.280 21 C 0.057 3.943 22 C -0.104 4.104 23 C -0.112 4.112 24 C -0.141 4.141 25 C -0.124 4.124 26 C -0.141 4.141 27 C -0.111 4.111 28 C -0.192 4.192 29 C -0.105 4.105 30 C 0.047 3.953 31 F -0.092 7.092 32 H 0.241 0.759 33 H 0.111 0.889 34 H -0.180 1.180 35 H -0.149 1.149 36 H 0.184 0.816 37 H 0.235 0.765 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.239 0.761 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.143 0.857 48 H 0.100 0.900 49 H 0.133 0.867 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.058 2.992 -4.178 5.246 hybrid contribution 0.053 -0.193 -0.366 0.417 sum 1.111 2.798 -4.543 5.451 Atomic orbital electron populations 1.86368 1.16426 1.82058 1.50339 1.24657 0.86561 1.10902 0.96376 0.95807 0.81168 0.75476 0.89539 1.19479 0.91477 0.96957 0.97525 1.20881 1.02440 0.96422 0.93159 1.17662 0.86579 0.91170 0.90499 1.91656 1.69239 1.71348 1.75929 1.19818 0.93498 1.03570 0.99019 1.17797 0.82162 0.81221 0.83796 1.90903 1.55223 1.38000 1.53847 1.45729 1.10718 1.51303 1.29045 1.21999 0.94845 0.97337 0.84281 0.87786 1.23810 0.94828 0.98847 1.01767 1.21969 0.98605 0.81673 0.94830 0.86870 1.44454 1.23557 1.18939 1.48561 1.18110 0.82676 0.79905 0.79087 1.91037 1.33119 1.78889 1.42178 1.86308 1.49034 1.28928 1.63764 1.21769 0.87335 0.85395 0.99812 1.19488 1.01389 0.94548 0.94929 1.21112 0.98826 0.98462 0.92753 1.21214 0.99141 0.93700 1.00063 1.21320 0.96958 0.98394 0.95760 1.21219 1.00206 0.98487 0.94200 1.21128 0.96715 0.93136 1.00151 1.23788 0.96750 0.99766 0.98892 1.21025 1.00475 0.95681 0.93329 1.17193 0.87915 0.96961 0.93244 1.91520 1.70687 1.71146 1.75798 0.75914 0.88939 1.18004 1.14946 0.81578 0.76486 0.86573 0.90080 0.76083 0.89953 0.89937 0.85718 0.85513 0.85598 0.85513 0.85699 0.90007 0.86684 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.15 11.47 -35.23 -0.40 0.74 16 2 C -0.08 0.13 2.96 36.01 0.11 0.24 16 3 Si 0.68 -1.24 30.71 -169.99 -5.22 -6.46 16 4 C -0.05 -0.03 5.17 -104.48 -0.54 -0.57 16 5 C -0.11 -0.13 9.33 -39.57 -0.37 -0.50 16 6 C 0.16 0.40 7.28 -38.97 -0.28 0.11 16 7 F -0.10 -0.49 15.55 2.25 0.04 -0.46 16 8 C -0.15 -0.19 5.88 -104.92 -0.62 -0.81 16 9 C 0.56 1.13 7.77 -12.40 -0.10 1.03 16 10 O -0.51 -2.92 15.27 5.31 0.08 -2.84 16 11 N -0.71 0.81 4.29 -54.00 -0.23 0.58 16 12 C 0.12 -0.18 4.00 -67.11 -0.27 -0.44 16 13 H 0.10 -0.07 8.05 -51.93 -0.42 -0.49 16 14 C -0.15 0.39 7.57 -25.91 -0.20 0.20 16 15 C 0.13 -0.16 4.28 -67.11 -0.29 -0.44 16 16 H 0.11 -0.01 7.54 -51.93 -0.39 -0.41 16 17 N -0.70 0.21 4.96 -57.93 -0.29 -0.08 16 18 C 0.65 1.59 8.75 54.05 0.47 2.06 16 19 O -0.56 -3.03 15.77 -19.29 -0.30 -3.33 16 20 O -0.37 -0.72 10.25 -40.32 -0.41 -1.13 16 21 C 0.13 0.14 5.60 36.00 0.20 0.34 16 22 C -0.10 -0.10 5.52 -104.63 -0.58 -0.68 16 23 C -0.09 -0.04 9.70 -39.58 -0.38 -0.43 16 24 C -0.12 0.00 10.05 -39.58 -0.40 -0.40 16 25 C -0.11 0.01 10.05 -39.58 -0.40 -0.39 16 26 C -0.12 -0.02 10.05 -39.58 -0.40 -0.42 16 27 C -0.09 -0.06 9.70 -39.58 -0.38 -0.45 16 28 C -0.15 0.24 7.62 -25.91 -0.20 0.05 16 29 C -0.09 0.05 9.51 -39.12 -0.37 -0.32 16 30 C 0.07 0.03 6.65 -39.49 -0.26 -0.23 16 31 F -0.11 -0.11 12.82 2.25 0.03 -0.08 16 32 H 0.39 -2.71 8.74 45.56 0.40 -2.31 16 33 H 0.09 -0.32 7.96 -51.93 -0.41 -0.73 16 34 H -0.26 -0.54 7.11 56.52 0.40 -0.14 16 35 H -0.23 -0.11 5.38 56.52 0.30 0.20 16 36 H 0.17 0.09 7.12 -52.49 -0.37 -0.28 16 37 H 0.40 -1.22 5.86 -40.82 -0.24 -1.46 16 38 H 0.12 -0.44 8.14 -51.93 -0.42 -0.86 16 39 H 0.08 -0.19 8.13 -51.93 -0.42 -0.61 16 40 H 0.40 -0.60 7.30 -40.82 -0.30 -0.89 16 41 H 0.08 0.07 8.08 -51.93 -0.42 -0.35 16 42 H 0.08 0.05 8.08 -51.93 -0.42 -0.37 16 43 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 44 H 0.13 -0.23 8.06 -52.49 -0.42 -0.65 16 45 H 0.13 -0.24 8.06 -52.49 -0.42 -0.66 16 46 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 47 H 0.13 -0.07 8.06 -52.48 -0.42 -0.49 16 48 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 49 H 0.11 -0.32 8.14 -51.93 -0.42 -0.75 16 50 H 0.15 -0.51 6.41 -52.48 -0.34 -0.85 16 LS Contribution 428.98 15.07 6.46 6.46 Total: 0.00 -10.85 428.98 -11.51 -22.36 By element: Atomic # 1 Polarization: -7.71 SS G_CDS: -6.01 Total: -13.72 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -5.25 Total: -2.05 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -0.52 Total: 0.50 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -1.04 Total: -6.56 kcal Atomic # 9 Polarization: -0.60 SS G_CDS: 0.06 Total: -0.53 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: -5.22 Total: -6.46 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -10.85 -11.51 -22.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109458_12360598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.822 kcal (2) G-P(sol) polarization free energy of solvation -10.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds