Wall clock time and date at job start Tue Mar 9 2021 14:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86297 * 109.47113 * 2 1 4 4 C 1.50701 * 109.47207 * 120.00172 * 2 1 3 5 5 C 1.38189 * 119.84055 * 14.99454 * 4 2 1 6 6 C 1.38312 * 120.14068 * 179.74576 * 5 4 2 7 7 F 1.35106 * 120.07925 * 180.27806 * 6 5 4 8 8 C 1.39800 * 119.83722 * 0.25895 * 6 5 4 9 9 C 1.47694 * 120.15745 * 180.02562 * 8 6 5 10 10 O 1.21566 * 120.00018 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99865 * 180.02562 * 9 8 6 12 12 C 1.46505 * 119.99958 * 180.02562 * 11 9 8 13 13 H 1.08991 * 112.84930 * 46.03778 * 12 11 9 14 14 C 1.53786 * 113.61456 * 177.34425 * 12 11 9 15 15 C 1.53787 * 87.07888 * 89.11207 * 14 12 11 16 16 H 1.09001 * 113.61008 * 139.98160 * 15 14 12 17 17 N 1.46496 * 113.61199 * 270.88288 * 15 14 12 18 18 C 1.34773 * 119.99927 * 255.63979 * 17 15 14 19 19 O 1.21518 * 120.00158 * 0.02562 * 18 17 15 20 20 O 1.34638 * 120.00258 * 180.02562 * 18 17 15 21 21 C 1.45208 * 117.00153 * 179.97438 * 20 18 17 22 22 C 1.50696 * 109.46811 * 180.02562 * 21 20 18 23 23 C 1.38242 * 119.99922 * 269.72441 * 22 21 20 24 24 C 1.38230 * 120.00206 * 179.76752 * 23 22 21 25 25 C 1.38246 * 119.99724 * 0.48907 * 24 23 22 26 26 C 1.38236 * 120.00105 * 359.78858 * 25 24 23 27 27 C 1.38230 * 120.00233 * 90.00610 * 22 21 20 28 28 C 1.53784 * 113.61079 * 274.84198 * 12 11 9 29 29 C 1.39661 * 119.68429 * 0.02562 * 8 6 5 30 30 C 1.38058 * 119.85633 * 359.97438 * 29 8 6 31 31 F 1.35101 * 119.91976 * 180.02562 * 30 29 8 32 32 H 0.96701 * 114.00328 * 59.99783 * 1 2 3 33 33 H 1.08995 * 109.46776 * 240.00230 * 2 1 3 34 34 H 1.48502 * 110.00321 * 60.00044 * 3 2 1 35 35 H 1.48496 * 110.00128 * 181.31936 * 3 2 1 36 36 H 1.07999 * 119.92837 * 0.02859 * 5 4 2 37 37 H 0.97001 * 119.99990 * 359.97438 * 11 9 8 38 38 H 1.08995 * 113.61131 * 203.66045 * 14 12 11 39 39 H 1.09000 * 113.61191 * 334.56821 * 14 12 11 40 40 H 0.97003 * 120.00062 * 75.64972 * 17 15 14 41 41 H 1.08998 * 109.46763 * 300.00518 * 21 20 18 42 42 H 1.09004 * 109.46628 * 60.00434 * 21 20 18 43 43 H 1.08000 * 119.99599 * 0.02562 * 23 22 21 44 44 H 1.07995 * 120.00781 * 180.25506 * 24 23 22 45 45 H 1.07994 * 120.00027 * 179.76509 * 25 24 23 46 46 H 1.07992 * 119.99950 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.00123 * 359.97438 * 27 22 21 48 48 H 1.09002 * 113.61081 * 25.42972 * 28 12 11 49 49 H 1.08994 * 113.60975 * 156.25231 * 28 12 11 50 50 H 1.08007 * 120.06973 * 179.97438 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.0689 -1.4962 1.9710 6 6 1.5247 -2.1552 3.0984 7 9 0.6818 -2.9276 3.8184 8 6 2.8597 -2.0205 3.4909 9 6 3.3540 -2.7215 4.6932 10 8 2.5995 -3.4180 5.3439 11 7 4.6415 -2.5889 5.0689 12 6 5.1320 -3.2847 6.2612 13 1 4.8167 -4.3272 6.3026 14 6 6.6349 -3.0830 6.5176 15 6 6.2482 -1.8401 7.3366 16 1 6.8353 -1.7170 8.2467 17 7 6.1679 -0.6137 6.5394 18 6 7.1514 0.3047 6.6149 19 8 8.1050 0.1153 7.3439 20 8 7.0774 1.4321 5.8826 21 6 8.1721 2.3769 6.0145 22 6 7.9170 3.5682 5.1275 23 6 8.3824 3.5730 3.8258 24 6 8.1443 4.6637 3.0107 25 6 7.4495 5.7539 3.5003 26 6 6.9891 5.7515 4.8038 27 6 7.2227 4.6585 5.6173 28 6 4.8856 -2.5141 7.5691 29 6 3.7237 -1.2198 2.7405 30 6 3.2552 -0.5678 1.6174 31 9 4.0900 0.2066 0.8904 32 1 -0.3934 0.4417 -0.7650 33 1 1.7922 -0.5138 -0.8900 34 1 1.5615 2.4679 1.2085 35 1 3.5345 1.7703 -0.0321 36 1 0.0380 -1.5995 1.6663 37 1 5.2436 -2.0334 4.5494 38 1 7.0863 -3.8758 7.1140 39 1 7.2044 -2.8527 5.6172 40 1 5.4068 -0.4626 5.9573 41 1 8.2457 2.7052 7.0512 42 1 9.1046 1.8961 5.7185 43 1 8.9285 2.7228 3.4445 44 1 8.5043 4.6658 1.9925 45 1 7.2667 6.6076 2.8647 46 1 6.4467 6.6033 5.1864 47 1 6.8627 4.6565 6.6355 48 1 4.0430 -1.8246 7.5174 49 1 4.8574 -3.1517 8.4527 50 1 4.7562 -1.1110 3.0383 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109458_12360598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:37:15 Heat of formation + Delta-G solvation = -125.744849 kcal Electronic energy + Delta-G solvation = -40611.751382 eV Core-core repulsion = 35015.739678 eV Total energy + Delta-G solvation = -5596.011704 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.142 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -50.63171 -50.20771 -42.19871 -41.45481 -40.50772 -40.06978 -39.36463 -37.65798 -37.52840 -35.29312 -34.35317 -33.17668 -32.80360 -31.92105 -31.56179 -28.22911 -27.72156 -26.91524 -25.82355 -24.38312 -23.94522 -23.61558 -22.90631 -22.29961 -21.86105 -21.14217 -19.92380 -19.76221 -19.01640 -18.59470 -18.31709 -18.05163 -17.81547 -17.69236 -17.51337 -17.19936 -17.06447 -16.91312 -16.53363 -16.36095 -16.15490 -16.07371 -15.92176 -15.86577 -15.72980 -15.57250 -15.35587 -14.79056 -14.75186 -14.51501 -14.30056 -14.21515 -14.00157 -13.73197 -13.60373 -13.52429 -13.40278 -13.13775 -13.12987 -13.03885 -12.55451 -12.27382 -12.19300 -12.14368 -11.86327 -11.78285 -11.76287 -11.60179 -11.29447 -11.07804 -10.52503 -10.28129 -10.23924 -9.94515 -9.94006 -9.78311 -4.96505 -0.90700 -0.42833 0.03776 0.38117 1.07310 1.10835 1.41860 1.53646 1.64753 1.69837 1.95752 2.15146 2.60403 2.68826 2.71910 2.90271 3.06757 3.10577 3.22130 3.32174 3.47012 3.57353 3.63076 3.68504 3.72830 3.82946 3.98419 4.01135 4.08388 4.15033 4.17539 4.21834 4.22165 4.38157 4.46904 4.50031 4.50910 4.59195 4.61762 4.62251 4.68017 4.71200 4.74449 4.87650 4.88324 4.92339 5.03318 5.04848 5.19170 5.27497 5.43042 5.44090 5.48272 5.51202 5.95967 6.10317 6.15936 6.80771 6.84204 7.08847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.079 4.079 3 Si 0.768 3.232 4 C -0.059 4.059 5 C -0.113 4.113 6 C 0.141 3.859 7 F -0.124 7.124 8 C -0.162 4.162 9 C 0.565 3.435 10 O -0.549 6.549 11 N -0.698 5.698 12 C 0.115 3.885 13 H 0.099 0.901 14 C -0.137 4.137 15 C 0.128 3.872 16 H 0.105 0.895 17 N -0.684 5.684 18 C 0.648 3.352 19 O -0.596 6.596 20 O -0.368 6.368 21 C 0.131 3.869 22 C -0.115 4.115 23 C -0.103 4.103 24 C -0.131 4.131 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.107 4.107 28 C -0.147 4.147 29 C -0.072 4.072 30 C 0.058 3.942 31 F -0.114 7.114 32 H 0.413 0.587 33 H 0.119 0.881 34 H -0.313 1.313 35 H -0.254 1.254 36 H 0.169 0.831 37 H 0.409 0.591 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.410 0.590 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.131 0.869 48 H 0.067 0.933 49 H 0.129 0.871 50 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 3.609 -7.530 8.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.187 4.187 3 Si 0.672 3.328 4 C -0.061 4.061 5 C -0.131 4.131 6 C 0.120 3.880 7 F -0.102 7.102 8 C -0.166 4.166 9 C 0.352 3.648 10 O -0.428 6.428 11 N -0.352 5.352 12 C 0.011 3.989 13 H 0.117 0.883 14 C -0.176 4.176 15 C 0.024 3.976 16 H 0.123 0.877 17 N -0.343 5.343 18 C 0.402 3.598 19 O -0.487 6.487 20 O -0.282 6.282 21 C 0.057 3.943 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.149 4.149 25 C -0.132 4.132 26 C -0.151 4.151 27 C -0.125 4.125 28 C -0.186 4.186 29 C -0.091 4.091 30 C 0.039 3.961 31 F -0.093 7.093 32 H 0.265 0.735 33 H 0.137 0.863 34 H -0.241 1.241 35 H -0.181 1.181 36 H 0.187 0.813 37 H 0.248 0.752 38 H 0.152 0.848 39 H 0.103 0.897 40 H 0.247 0.753 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.162 0.838 46 H 0.159 0.841 47 H 0.149 0.851 48 H 0.086 0.914 49 H 0.147 0.853 50 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.730 3.355 -5.756 6.884 hybrid contribution -0.156 -0.206 0.103 0.278 sum 1.574 3.149 -5.654 6.660 Atomic orbital electron populations 1.86337 1.16048 1.82563 1.52013 1.24766 0.87087 1.10642 0.96249 0.94942 0.78104 0.73318 0.86456 1.19821 0.91516 0.96536 0.98217 1.20892 1.02766 0.96565 0.92891 1.17972 0.87049 0.91827 0.91155 1.91598 1.69916 1.72107 1.76556 1.19799 0.93367 1.04219 0.99199 1.17922 0.82617 0.80654 0.83616 1.90878 1.56489 1.40105 1.55280 1.45634 1.09857 1.50672 1.29001 1.22089 0.95751 0.97030 0.84070 0.88313 1.23780 0.93858 0.98249 1.01733 1.22075 0.98872 0.81779 0.94872 0.87707 1.44464 1.22988 1.18652 1.48239 1.18263 0.82713 0.80113 0.78756 1.91013 1.34528 1.79551 1.43599 1.86313 1.49387 1.28901 1.63593 1.21814 0.87252 0.85393 0.99843 1.19566 1.02034 0.94567 0.95325 1.21332 0.98956 0.99174 0.92670 1.21499 0.98970 0.93517 1.00887 1.21626 0.96591 0.99022 0.95950 1.21478 1.00320 0.98813 0.94452 1.21322 0.97020 0.93451 1.00726 1.23797 0.95840 0.99511 0.99448 1.21236 1.01377 0.94123 0.92340 1.17317 0.88035 0.97204 0.93585 1.91529 1.70727 1.71196 1.75843 0.73451 0.86341 1.24096 1.18063 0.81312 0.75206 0.84813 0.89730 0.75347 0.90194 0.89648 0.84612 0.83801 0.83836 0.84094 0.85132 0.91413 0.85270 0.80487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.90 11.47 -148.98 -1.71 1.19 16 2 C -0.08 0.35 2.96 71.24 0.21 0.57 16 3 Si 0.77 -3.09 30.71 68.60 2.11 -0.98 16 4 C -0.06 -0.05 5.17 -19.78 -0.10 -0.15 16 5 C -0.11 -0.35 9.33 22.28 0.21 -0.14 16 6 C 0.14 0.90 7.28 22.67 0.17 1.07 16 7 F -0.12 -1.46 15.55 44.97 0.70 -0.76 16 8 C -0.16 -0.53 5.88 -20.06 -0.12 -0.64 16 9 C 0.56 2.78 7.77 86.74 0.67 3.45 16 10 O -0.55 -7.34 15.27 -3.92 -0.06 -7.40 16 11 N -0.70 1.59 4.29 -443.04 -1.90 -0.31 16 12 C 0.12 -0.35 4.00 45.52 0.18 -0.17 16 13 H 0.10 -0.12 8.05 -2.39 -0.02 -0.14 16 14 C -0.14 0.83 7.57 31.12 0.24 1.06 16 15 C 0.13 -0.31 4.28 45.52 0.19 -0.12 16 16 H 0.10 0.00 7.54 -2.39 -0.02 -0.02 16 17 N -0.68 0.38 4.96 -567.59 -2.82 -2.44 16 18 C 0.65 3.44 8.75 129.79 1.14 4.58 16 19 O -0.60 -6.83 15.77 19.79 0.31 -6.52 16 20 O -0.37 -1.61 10.25 -55.47 -0.57 -2.18 16 21 C 0.13 0.38 5.60 71.23 0.40 0.78 16 22 C -0.11 -0.28 5.52 -19.87 -0.11 -0.39 16 23 C -0.10 -0.09 9.70 22.27 0.22 0.13 16 24 C -0.13 0.06 10.05 22.27 0.22 0.29 16 25 C -0.11 0.07 10.05 22.27 0.22 0.29 16 26 C -0.13 -0.04 10.05 22.27 0.22 0.18 16 27 C -0.11 -0.20 9.70 22.27 0.22 0.01 16 28 C -0.15 0.45 7.62 31.12 0.24 0.68 16 29 C -0.07 0.12 9.51 22.57 0.21 0.33 16 30 C 0.06 0.03 6.65 22.33 0.15 0.17 16 31 F -0.11 -0.13 12.82 44.97 0.58 0.45 16 32 H 0.41 -6.36 8.74 -74.06 -0.65 -7.01 16 33 H 0.12 -1.09 7.96 -2.39 -0.02 -1.11 16 34 H -0.31 -1.75 7.11 99.48 0.71 -1.05 16 35 H -0.25 -0.13 5.38 99.48 0.54 0.40 16 36 H 0.17 0.33 7.12 -2.91 -0.02 0.31 16 37 H 0.41 -2.83 5.86 -92.71 -0.54 -3.37 16 38 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 39 H 0.08 -0.51 8.13 -2.39 -0.02 -0.53 16 40 H 0.41 -1.27 7.30 -92.71 -0.68 -1.95 16 41 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 42 H 0.09 0.16 8.08 -2.39 -0.02 0.15 16 43 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 44 H 0.14 -0.67 8.06 -2.91 -0.02 -0.69 16 45 H 0.14 -0.70 8.06 -2.91 -0.02 -0.72 16 46 H 0.14 -0.48 8.06 -2.91 -0.02 -0.51 16 47 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 48 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 49 H 0.13 -0.75 8.14 -2.39 -0.02 -0.77 16 50 H 0.18 -1.46 6.41 -2.91 -0.02 -1.48 16 Total: 0.00 -27.31 428.98 0.46 -26.84 By element: Atomic # 1 Polarization: -18.92 SS G_CDS: -0.95 Total: -19.87 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 4.78 Total: 11.98 kcal Atomic # 7 Polarization: 1.97 SS G_CDS: -4.72 Total: -2.75 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -2.02 Total: -14.91 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 1.28 Total: -0.31 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: 2.11 Total: -0.98 kcal Total: -27.31 0.46 -26.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109458_12360598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.902 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds