Wall clock time and date at job start Tue Mar 9 2021 14:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35656 * 117.00161 * 2 1 4 4 C 1.40135 * 120.14992 * 179.97438 * 3 2 1 5 5 C 1.47530 * 120.19305 * 0.02562 * 4 3 2 6 6 O 1.21595 * 120.00119 * 359.97438 * 5 4 3 7 7 N 1.34783 * 120.00313 * 180.02562 * 5 4 3 8 8 C 1.46489 * 120.00303 * 179.97438 * 7 5 4 9 9 H 1.09004 * 112.85268 * 334.66473 * 8 7 5 10 10 C 1.53788 * 113.61695 * 105.86060 * 8 7 5 11 11 C 1.54054 * 86.98250 * 89.16211 * 10 8 7 12 12 H 1.08997 * 113.61628 * 139.98295 * 11 10 8 13 13 N 1.46505 * 113.69055 * 270.87404 * 11 10 8 14 14 C 1.34779 * 120.00007 * 252.53566 * 13 11 10 15 15 O 1.21506 * 120.00087 * 359.97438 * 14 13 11 16 16 O 1.34636 * 119.99565 * 180.02562 * 14 13 11 17 17 C 1.45200 * 116.99747 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47116 * 179.97438 * 17 16 14 19 19 C 1.38229 * 119.99953 * 269.72078 * 18 17 16 20 20 C 1.38233 * 120.00107 * 179.76657 * 19 18 17 21 21 C 1.38237 * 119.99952 * 0.48404 * 20 19 18 22 22 C 1.38240 * 119.99627 * 359.79342 * 21 20 19 23 23 C 1.38230 * 119.99870 * 89.99840 * 18 17 16 24 24 C 1.53776 * 87.07725 * 25.43295 * 11 10 8 25 25 C 1.39710 * 119.61522 * 180.02562 * 4 3 2 26 26 C 1.37783 * 119.90774 * 0.02562 * 25 4 3 27 27 C 1.50702 * 119.85055 * 179.97438 * 26 25 4 28 28 O 1.42901 * 109.46883 * 300.00216 * 27 26 25 29 29 Si 1.86294 * 109.47375 * 179.97438 * 27 26 25 30 30 C 1.38546 * 120.30152 * 359.73983 * 26 25 4 31 31 C 1.38054 * 120.39080 * 0.51910 * 30 26 25 32 32 H 1.08998 * 109.47606 * 300.00349 * 1 2 3 33 33 H 1.09006 * 109.47060 * 60.00550 * 1 2 3 34 34 H 1.09000 * 109.47458 * 180.02562 * 1 2 3 35 35 H 0.97006 * 119.99179 * 359.97438 * 7 5 4 36 36 H 1.09000 * 113.61625 * 203.66415 * 10 8 7 37 37 H 1.09002 * 113.61126 * 334.57295 * 10 8 7 38 38 H 0.97001 * 119.99869 * 72.52522 * 13 11 10 39 39 H 1.09008 * 109.46732 * 299.99552 * 17 16 14 40 40 H 1.08998 * 109.47354 * 59.99557 * 17 16 14 41 41 H 1.08009 * 120.00036 * 0.02562 * 19 18 17 42 42 H 1.08002 * 120.00317 * 180.25116 * 20 19 18 43 43 H 1.08002 * 120.00457 * 179.76562 * 21 20 19 44 44 H 1.08000 * 119.99188 * 179.97438 * 22 21 20 45 45 H 1.08000 * 120.00540 * 359.97438 * 23 18 17 46 46 H 1.09001 * 113.61696 * 220.01905 * 24 11 10 47 47 H 1.08998 * 113.61266 * 89.12125 * 24 11 10 48 48 H 1.07997 * 120.04539 * 179.97438 * 25 4 3 49 49 H 1.09001 * 109.46993 * 59.99584 * 27 26 25 50 50 H 0.96698 * 113.99915 * 180.02562 * 28 27 26 51 51 H 1.48497 * 110.00039 * 298.68108 * 29 27 26 52 52 H 1.48501 * 110.00108 * 60.00154 * 29 27 26 53 53 H 1.08001 * 119.80557 * 180.25852 * 30 26 25 54 54 H 1.08002 * 119.96228 * 179.76719 * 31 30 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4441 1.2857 0.0005 5 6 4.2550 0.0532 0.0005 6 8 3.7094 -1.0335 0.0005 7 7 5.6005 0.1317 0.0016 8 6 6.4057 -1.0921 0.0022 9 1 5.8796 -1.9448 0.4315 10 6 7.0670 -1.3951 -1.3528 11 6 8.2587 -0.5473 -0.8686 12 1 9.2290 -0.9609 -1.1433 13 7 8.1363 0.8771 -1.1885 14 6 8.9064 1.4200 -2.1523 15 8 9.7025 0.7281 -2.7555 16 8 8.7941 2.7291 -2.4459 17 6 9.6546 3.2454 -3.4953 18 6 9.3900 4.7170 -3.6834 19 6 8.4328 5.1371 -4.5878 20 6 8.1866 6.4868 -4.7568 21 6 8.9047 7.4168 -4.0286 22 6 9.8660 6.9969 -3.1282 23 6 10.1084 5.6470 -2.9555 24 6 7.8235 -0.8965 0.5644 25 6 4.0668 2.5363 0.0011 26 6 3.3038 3.6836 0.0016 27 6 3.9768 5.0320 0.0028 28 8 4.7919 5.1565 1.1699 29 14 2.6826 6.3720 0.0025 30 6 1.9207 3.6033 -0.0038 31 6 1.2924 2.3740 0.0010 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 -1.0276 0.0005 35 1 6.0357 0.9986 0.0020 36 1 7.3095 -2.4483 -1.4945 37 1 6.5388 -0.9631 -2.2028 38 1 7.5009 1.4295 -0.7068 39 1 10.6977 3.0962 -3.2162 40 1 9.4486 2.7177 -4.4265 41 1 7.8742 4.4106 -5.1595 42 1 7.4359 6.8149 -5.4606 43 1 8.7151 8.4715 -4.1633 44 1 10.4272 7.7235 -2.5596 45 1 10.8592 5.3190 -2.2518 46 1 7.9057 -0.0623 1.2612 47 1 8.2725 -1.8135 0.9458 48 1 5.1446 2.6037 0.0019 49 1 4.5991 5.1282 -0.8869 50 1 5.2562 6.0021 1.2370 51 1 1.8490 6.2728 -1.2224 52 1 1.8270 6.2521 1.2103 53 1 1.3304 4.5077 -0.0076 54 1 0.2138 2.3195 0.0005 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109458_12496546.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:37:20 Heat of formation + Delta-G solvation = -79.300838 kcal Electronic energy + Delta-G solvation = -40167.405279 eV Core-core repulsion = 35038.095679 eV Total energy + Delta-G solvation = -5129.309600 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.176 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.22449 -41.72107 -40.87850 -40.05413 -39.32503 -39.18686 -37.48362 -37.19778 -35.11804 -34.25467 -33.02134 -32.51724 -32.00456 -31.82428 -28.67468 -27.72794 -26.84010 -26.33406 -26.16863 -24.93327 -23.51559 -23.24586 -22.46232 -22.20331 -21.63462 -21.06221 -19.80317 -19.54596 -18.56579 -18.31588 -18.14327 -17.75526 -17.70320 -17.44609 -16.98589 -16.95370 -16.46514 -16.33826 -16.15535 -16.03626 -16.02643 -15.84721 -15.59973 -15.47590 -14.90670 -14.71886 -14.60875 -14.45158 -14.23283 -14.17950 -13.93794 -13.91166 -13.77165 -13.55846 -13.49272 -13.32382 -13.08403 -12.99764 -12.55543 -12.37746 -12.20428 -12.12815 -12.08081 -11.97598 -11.94863 -11.80693 -11.71702 -11.59778 -11.09043 -10.45707 -10.37268 -10.30555 -10.15449 -9.84754 -9.84383 -9.41484 -4.93854 -0.47001 0.05218 0.12417 0.47953 1.12648 1.30261 1.57770 1.59685 1.65899 1.89274 1.96159 2.12026 2.50134 2.77154 3.13068 3.27822 3.30633 3.38022 3.44682 3.50613 3.68850 3.71289 3.79308 3.81526 3.88828 4.00454 4.02363 4.09617 4.17378 4.22197 4.22906 4.24026 4.25114 4.30864 4.42150 4.49168 4.55093 4.60429 4.60612 4.65341 4.70749 4.71411 4.72012 4.77810 4.88402 4.91606 4.93957 5.01563 5.10442 5.13058 5.13506 5.27576 5.36530 5.49935 5.53710 5.58266 5.61319 6.05668 6.12936 6.16330 6.31075 6.92518 7.04920 7.13376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.307 6.307 3 C 0.173 3.827 4 C -0.193 4.193 5 C 0.564 3.436 6 O -0.553 6.553 7 N -0.701 5.701 8 C 0.111 3.889 9 H 0.098 0.902 10 C -0.163 4.163 11 C 0.129 3.871 12 H 0.109 0.891 13 N -0.681 5.681 14 C 0.649 3.351 15 O -0.600 6.600 16 O -0.363 6.363 17 C 0.129 3.871 18 C -0.114 4.114 19 C -0.106 4.106 20 C -0.130 4.130 21 C -0.110 4.110 22 C -0.128 4.128 23 C -0.103 4.103 24 C -0.129 4.129 25 C -0.014 4.014 26 C -0.131 4.131 27 C -0.070 4.070 28 O -0.560 6.560 29 Si 0.764 3.236 30 C -0.064 4.064 31 C -0.211 4.211 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.401 0.599 36 H 0.120 0.880 37 H 0.058 0.942 38 H 0.407 0.593 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.133 0.867 46 H 0.095 0.905 47 H 0.140 0.860 48 H 0.155 0.845 49 H 0.097 0.903 50 H 0.404 0.596 51 H -0.285 1.285 52 H -0.294 1.294 53 H 0.132 0.868 54 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.791 8.805 1.097 8.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.219 6.219 3 C 0.125 3.875 4 C -0.197 4.197 5 C 0.353 3.647 6 O -0.431 6.431 7 N -0.355 5.355 8 C 0.006 3.994 9 H 0.117 0.883 10 C -0.203 4.203 11 C 0.025 3.975 12 H 0.127 0.873 13 N -0.341 5.341 14 C 0.402 3.598 15 O -0.490 6.490 16 O -0.277 6.277 17 C 0.056 3.944 18 C -0.114 4.114 19 C -0.124 4.124 20 C -0.148 4.148 21 C -0.128 4.128 22 C -0.146 4.146 23 C -0.121 4.121 24 C -0.168 4.168 25 C -0.032 4.032 26 C -0.132 4.132 27 C -0.181 4.181 28 O -0.370 6.370 29 Si 0.670 3.330 30 C -0.082 4.082 31 C -0.229 4.229 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.240 0.760 36 H 0.138 0.862 37 H 0.077 0.923 38 H 0.245 0.755 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.114 0.886 47 H 0.158 0.842 48 H 0.172 0.828 49 H 0.115 0.885 50 H 0.255 0.745 51 H -0.213 1.213 52 H -0.222 1.222 53 H 0.149 0.851 54 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.158 7.136 0.857 7.189 hybrid contribution -0.478 -0.086 -0.186 0.520 sum -0.636 7.051 0.671 7.111 Atomic orbital electron populations 1.23471 0.76468 1.05772 1.02665 1.86337 1.23222 1.25829 1.86480 1.19306 0.91373 0.85376 0.91481 1.19468 0.91143 0.94193 1.14921 1.18127 0.82481 0.88410 0.75727 1.90820 1.72257 1.29959 1.50106 1.45600 1.05028 1.09574 1.75326 1.22074 0.92019 0.87899 0.97440 0.88349 1.24044 0.96582 1.02254 0.97373 1.22120 1.00336 0.77871 0.97141 0.87342 1.44424 1.41480 1.10535 1.37651 1.18265 0.80228 0.80984 0.80324 1.91007 1.40713 1.62653 1.54646 1.86306 1.62365 1.23341 1.55674 1.21820 0.93437 0.90581 0.88612 1.19511 0.99586 0.92692 0.99603 1.21278 0.96428 0.97001 0.97724 1.21452 1.00454 0.92617 1.00266 1.21609 0.95051 1.00960 0.95144 1.21477 0.98490 0.95682 0.98935 1.21300 0.99196 0.93415 0.98149 1.23732 0.92650 1.05498 0.94880 1.21090 1.00738 0.88999 0.92383 1.19509 0.92923 0.95399 1.05349 1.24666 1.02564 0.98913 0.91909 1.86426 1.64745 1.43900 1.41972 0.94282 0.77373 0.84782 0.76515 1.21085 0.94327 0.97422 0.95327 1.21385 1.01720 0.90892 1.08953 0.91092 0.91036 0.86825 0.76038 0.86179 0.92339 0.75526 0.89984 0.90498 0.85461 0.84090 0.83695 0.83796 0.84944 0.88641 0.84208 0.82797 0.88484 0.74459 1.21254 1.22186 0.85100 0.82235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.81 113.37 1.11 1.12 16 2 O -0.31 -3.22 8.57 -68.80 -0.59 -3.81 16 3 C 0.17 1.48 6.70 22.84 0.15 1.64 16 4 C -0.19 -1.49 5.89 -20.01 -0.12 -1.60 16 5 C 0.56 5.43 7.76 86.69 0.67 6.11 16 6 O -0.55 -9.74 14.78 16.90 0.25 -9.49 16 7 N -0.70 -1.27 5.07 -443.20 -2.25 -3.52 16 8 C 0.11 0.02 4.29 45.52 0.20 0.21 16 9 H 0.10 0.34 7.50 -2.38 -0.02 0.33 16 10 C -0.16 -0.05 7.70 31.22 0.24 0.19 16 11 C 0.13 -0.17 4.33 45.61 0.20 0.02 16 12 H 0.11 0.07 7.46 -2.39 -0.02 0.05 16 13 N -0.68 0.09 5.14 -567.17 -2.92 -2.82 16 14 C 0.65 3.84 8.75 129.79 1.14 4.98 16 15 O -0.60 -7.56 15.73 19.82 0.31 -7.25 16 16 O -0.36 -1.41 10.25 -55.45 -0.57 -1.98 16 17 C 0.13 0.33 5.60 71.24 0.40 0.73 16 18 C -0.11 -0.11 5.52 -19.87 -0.11 -0.22 16 19 C -0.11 0.01 9.70 22.27 0.22 0.23 16 20 C -0.13 0.31 10.05 22.27 0.22 0.54 16 21 C -0.11 0.39 10.05 22.27 0.22 0.62 16 22 C -0.13 0.39 10.05 22.27 0.22 0.61 16 23 C -0.10 0.09 9.70 22.27 0.22 0.31 16 24 C -0.13 0.74 7.58 31.12 0.24 0.97 16 25 C -0.01 -0.03 9.09 22.52 0.20 0.17 16 26 C -0.13 -0.30 5.42 -19.90 -0.11 -0.41 16 27 C -0.07 0.25 2.80 71.24 0.20 0.45 16 28 O -0.56 2.29 12.74 -148.98 -1.90 0.39 16 29 Si 0.76 -3.39 29.77 68.60 2.04 -1.34 16 30 C -0.06 -0.21 8.66 22.30 0.19 -0.02 16 31 C -0.21 -0.84 9.03 22.34 0.20 -0.64 16 32 H 0.07 -0.15 7.66 -2.39 -0.02 -0.17 16 33 H 0.07 -0.16 7.66 -2.38 -0.02 -0.18 16 34 H 0.11 -0.15 8.14 -2.39 -0.02 -0.16 16 35 H 0.40 -1.22 4.20 -92.70 -0.39 -1.61 16 36 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.41 -1.70 6.27 -92.71 -0.58 -2.28 16 39 H 0.08 0.18 8.08 -2.38 -0.02 0.16 16 40 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 41 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 42 H 0.14 -0.86 8.06 -2.91 -0.02 -0.88 16 43 H 0.15 -1.15 8.06 -2.91 -0.02 -1.17 16 44 H 0.14 -1.02 8.06 -2.91 -0.02 -1.04 16 45 H 0.13 -0.44 8.06 -2.91 -0.02 -0.46 16 46 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 47 H 0.14 -1.31 8.14 -2.39 -0.02 -1.33 16 48 H 0.15 -0.47 6.40 -2.91 -0.02 -0.49 16 49 H 0.10 -0.72 7.96 -2.39 -0.02 -0.74 16 50 H 0.40 -5.61 8.74 -74.06 -0.65 -6.26 16 51 H -0.29 -0.20 7.11 99.48 0.71 0.51 16 52 H -0.29 -0.88 7.11 99.48 0.71 -0.17 16 53 H 0.13 0.18 4.85 -2.91 -0.01 0.16 16 54 H 0.16 -0.18 6.30 -2.91 -0.02 -0.20 16 Total: 0.00 -30.21 446.90 -0.31 -30.52 By element: Atomic # 1 Polarization: -16.11 SS G_CDS: -0.60 Total: -16.71 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 5.91 Total: 16.01 kcal Atomic # 7 Polarization: -1.18 SS G_CDS: -5.16 Total: -6.34 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -2.49 Total: -22.14 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: 2.04 Total: -1.34 kcal Total: -30.21 -0.31 -30.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109458_12496546.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.779 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds