Wall clock time and date at job start Tue Mar 9 2021 14:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38977 * 119.95860 * 2 1 4 4 O 1.35710 * 119.90594 * 0.05109 * 3 2 1 5 5 C 1.39007 * 120.17861 * 180.02562 * 3 2 1 6 6 C 1.50705 * 119.95457 * 179.97438 * 5 3 2 7 7 O 1.42893 * 109.47217 * 285.00323 * 6 5 3 8 8 Si 1.86301 * 109.47011 * 165.00388 * 6 5 3 9 9 C 1.37682 * 120.08928 * 359.72744 * 5 3 2 10 10 C 1.39753 * 119.91005 * 0.55343 * 9 5 3 11 11 C 1.47607 * 120.08657 * 179.72466 * 10 9 5 12 12 O 1.21577 * 120.00026 * 359.71647 * 11 10 9 13 13 N 1.34777 * 119.99706 * 179.45096 * 11 10 9 14 14 C 1.46500 * 119.99718 * 180.27230 * 13 11 10 15 15 H 1.08990 * 112.85280 * 333.04728 * 14 13 11 16 16 C 1.53779 * 113.61303 * 104.35863 * 14 13 11 17 17 C 1.53776 * 87.08633 * 89.11453 * 16 14 13 18 18 H 1.08999 * 113.69476 * 139.99038 * 17 16 14 19 19 N 1.46501 * 113.61317 * 270.88590 * 17 16 14 20 20 C 1.34783 * 120.00117 * 182.63134 * 19 17 16 21 21 O 1.21510 * 119.99911 * 0.02562 * 20 19 17 22 22 O 1.34630 * 119.99809 * 179.97438 * 20 19 17 23 23 C 1.45202 * 116.99899 * 179.97438 * 22 20 19 24 24 C 1.50699 * 109.47514 * 180.02562 * 23 22 20 25 25 C 1.38243 * 119.99846 * 269.73101 * 24 23 22 26 26 C 1.38230 * 119.99586 * 179.76545 * 25 24 23 27 27 C 1.38240 * 120.00190 * 0.47868 * 26 25 24 28 28 C 1.38231 * 119.99840 * 359.79469 * 27 26 25 29 29 C 1.38234 * 119.99917 * 89.99931 * 24 23 22 30 30 C 1.53785 * 87.08282 * 25.43030 * 17 16 14 31 31 C 1.37732 * 119.95768 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46769 * 269.97407 * 1 2 3 33 33 H 1.08997 * 109.47206 * 29.97722 * 1 2 3 34 34 H 1.09000 * 109.47025 * 149.97609 * 1 2 3 35 35 H 0.96693 * 114.00431 * 89.99579 * 4 3 2 36 36 H 1.08997 * 109.47236 * 45.00768 * 6 5 3 37 37 H 0.96700 * 114.00081 * 300.00041 * 7 6 5 38 38 H 1.48502 * 110.00279 * 58.68228 * 8 6 5 39 39 H 1.48497 * 110.00285 * 180.02562 * 8 6 5 40 40 H 1.08007 * 120.04498 * 180.29499 * 9 5 3 41 41 H 0.97001 * 120.00353 * 0.26870 * 13 11 10 42 42 H 1.09005 * 113.61272 * 203.66533 * 16 14 13 43 43 H 1.09003 * 113.61577 * 334.56112 * 16 14 13 44 44 H 0.96999 * 119.99841 * 2.63254 * 19 17 16 45 45 H 1.08997 * 109.47338 * 300.00721 * 23 22 20 46 46 H 1.09007 * 109.46985 * 60.00167 * 23 22 20 47 47 H 1.07997 * 120.00020 * 359.97438 * 25 24 23 48 48 H 1.08003 * 119.99823 * 180.25472 * 26 25 24 49 49 H 1.07997 * 119.99856 * 179.76784 * 27 26 25 50 50 H 1.08003 * 119.99849 * 179.97438 * 28 27 26 51 51 H 1.07996 * 120.00019 * 0.02562 * 29 24 23 52 52 H 1.09001 * 113.61891 * 220.02647 * 30 17 16 53 53 H 1.08997 * 113.61644 * 89.11628 * 30 17 16 54 54 H 1.07997 * 120.03852 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5197 2.3778 0.0010 5 6 3.5910 1.2094 -0.0005 6 6 4.3385 2.5180 -0.0011 7 8 4.2714 3.1043 -1.3025 8 14 6.1199 2.2158 0.4528 9 6 4.2859 0.0208 0.0046 10 6 3.5918 -1.1922 -0.0014 11 6 4.3328 -2.4688 -0.0020 12 8 5.5486 -2.4659 -0.0026 13 7 3.6616 -3.6375 0.0034 14 6 4.3971 -4.9045 0.0088 15 1 5.3837 -4.8231 -0.4472 16 6 4.4047 -5.6065 1.3770 17 6 3.1046 -6.3017 0.9395 18 1 3.0471 -7.3492 1.2355 19 7 1.8943 -5.5481 1.2761 20 6 0.6803 -6.0640 0.9991 21 8 0.5898 -7.1544 0.4707 22 8 -0.4320 -5.3716 1.3089 23 6 -1.7050 -5.9883 0.9812 24 6 -2.8282 -5.0739 1.3976 25 6 -3.3720 -5.1795 2.6642 26 6 -4.3990 -4.3374 3.0477 27 6 -4.8889 -3.3965 2.1613 28 6 -4.3489 -3.2948 0.8929 29 6 -3.3184 -4.1334 0.5110 30 6 3.5750 -6.0961 -0.5101 31 6 2.1947 -1.1933 -0.0005 32 1 -0.3633 -0.0005 1.0277 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3633 -0.8898 -0.5142 35 1 1.3228 2.7175 0.8847 36 1 3.8881 3.1941 0.7256 37 1 4.6548 2.5564 -2.0010 38 1 6.7367 1.2706 -0.5123 39 1 6.8679 3.4987 0.4564 40 1 5.3659 0.0258 0.0090 41 1 2.6916 -3.6398 0.0038 42 1 5.2420 -6.2913 1.5117 43 1 4.2741 -4.9255 2.2180 44 1 1.9666 -4.6778 1.6983 45 1 -1.7583 -6.1628 -0.0934 46 1 -1.7950 -6.9382 1.5084 47 1 -2.9922 -5.9175 3.3551 48 1 -4.8211 -4.4171 4.0386 49 1 -5.6938 -2.7412 2.4597 50 1 -4.7320 -2.5600 0.2003 51 1 -2.8968 -4.0541 -0.4800 52 1 2.7746 -5.8102 -1.1926 53 1 4.1855 -6.9147 -0.8913 54 1 1.6547 -2.1285 -0.0005 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109458_13287732.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:38:28 Heat of formation + Delta-G solvation = -97.939368 kcal Electronic energy + Delta-G solvation = -39912.775665 eV Core-core repulsion = 34782.657837 eV Total energy + Delta-G solvation = -5130.117828 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.176 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.16049 -41.61022 -40.88415 -40.10323 -39.47442 -37.98606 -37.54603 -37.40097 -35.17404 -34.18837 -33.91072 -32.96976 -31.84180 -31.63456 -28.01859 -27.73446 -27.00056 -26.85000 -26.07275 -24.53945 -23.53363 -22.87967 -22.20843 -22.10354 -21.53667 -20.89196 -19.80654 -19.58960 -18.89002 -18.22207 -18.16274 -17.72862 -17.41444 -17.34130 -16.88488 -16.68935 -16.44391 -16.25220 -16.09932 -16.03111 -15.89413 -15.85562 -15.62412 -15.16133 -14.75267 -14.71948 -14.44408 -14.39040 -14.15363 -14.09040 -13.92198 -13.90346 -13.62374 -13.42540 -13.29833 -13.29077 -13.02014 -12.89897 -12.81632 -12.47508 -12.17953 -12.12378 -12.06410 -11.92418 -11.79166 -11.70091 -11.65119 -11.48206 -11.17350 -10.62971 -10.42431 -10.19602 -10.00969 -9.86430 -9.86044 -9.67064 -5.01400 -0.42609 0.04436 0.11799 0.46217 1.17083 1.20567 1.53006 1.56251 1.63264 1.86557 1.92884 2.52124 2.77183 3.10098 3.17693 3.28729 3.30654 3.45811 3.50132 3.54035 3.68792 3.72256 3.76530 3.80242 3.96505 4.06412 4.09293 4.14539 4.22708 4.25359 4.29882 4.34463 4.45873 4.56791 4.58699 4.60813 4.69910 4.70005 4.71261 4.73489 4.78182 4.80347 4.92697 4.94887 5.00127 5.02158 5.05736 5.11337 5.14220 5.19432 5.28002 5.30644 5.51124 5.52322 5.56433 5.58648 5.59448 6.03671 6.22966 6.32173 6.39743 6.76017 7.01754 7.18893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C 0.162 3.838 4 O -0.495 6.495 5 C -0.151 4.151 6 C -0.062 4.062 7 O -0.540 6.540 8 Si 0.751 3.249 9 C -0.062 4.062 10 C -0.151 4.151 11 C 0.564 3.436 12 O -0.568 6.568 13 N -0.699 5.699 14 C 0.111 3.889 15 H 0.098 0.902 16 C -0.137 4.137 17 C 0.133 3.867 18 H 0.099 0.901 19 N -0.684 5.684 20 C 0.647 3.353 21 O -0.598 6.598 22 O -0.363 6.363 23 C 0.131 3.869 24 C -0.112 4.112 25 C -0.105 4.105 26 C -0.132 4.132 27 C -0.114 4.114 28 C -0.130 4.130 29 C -0.101 4.101 30 C -0.149 4.149 31 C -0.056 4.056 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.413 0.587 36 H 0.133 0.867 37 H 0.383 0.617 38 H -0.294 1.294 39 H -0.293 1.293 40 H 0.134 0.866 41 H 0.407 0.593 42 H 0.131 0.869 43 H 0.085 0.915 44 H 0.415 0.585 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.131 0.869 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.142 0.858 51 H 0.135 0.865 52 H 0.069 0.931 53 H 0.125 0.875 54 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 -0.324 5.157 7.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 C 0.116 3.884 4 O -0.309 6.309 5 C -0.152 4.152 6 C -0.172 4.172 7 O -0.348 6.348 8 Si 0.658 3.342 9 C -0.081 4.081 10 C -0.154 4.154 11 C 0.353 3.647 12 O -0.448 6.448 13 N -0.351 5.351 14 C 0.006 3.994 15 H 0.116 0.884 16 C -0.176 4.176 17 C 0.029 3.971 18 H 0.117 0.883 19 N -0.345 5.345 20 C 0.401 3.599 21 O -0.488 6.488 22 O -0.277 6.277 23 C 0.057 3.943 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.150 4.150 27 C -0.132 4.132 28 C -0.147 4.147 29 C -0.119 4.119 30 C -0.188 4.188 31 C -0.075 4.075 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.274 0.726 36 H 0.151 0.849 37 H 0.231 0.769 38 H -0.222 1.222 39 H -0.221 1.221 40 H 0.152 0.848 41 H 0.245 0.755 42 H 0.149 0.851 43 H 0.103 0.897 44 H 0.252 0.748 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.149 0.851 48 H 0.157 0.843 49 H 0.159 0.841 50 H 0.160 0.840 51 H 0.153 0.847 52 H 0.088 0.912 53 H 0.143 0.857 54 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.882 -0.388 4.394 5.876 hybrid contribution -0.488 0.231 -0.773 0.943 sum -4.370 -0.157 3.621 5.677 Atomic orbital electron populations 1.20747 0.88387 1.03864 1.03737 1.20411 0.98223 0.91713 1.01497 1.18407 0.88652 0.85818 0.95507 1.84732 1.75428 1.35522 1.35239 1.20519 0.94109 0.95460 1.05122 1.24919 1.10058 0.93934 0.88291 1.86616 1.82922 1.48169 1.17064 0.94191 0.73077 0.77222 0.89712 1.21112 1.00465 0.90835 0.95679 1.19762 0.94133 0.92676 1.08869 1.18339 0.86804 0.84294 0.75303 1.90797 1.14915 1.87967 1.51144 1.45628 1.10436 1.04609 1.74468 1.22067 0.96870 0.82387 0.98104 0.88389 1.23752 0.96567 0.99884 0.97370 1.21996 0.82281 0.96487 0.96297 0.88347 1.44468 1.01714 1.23661 1.64641 1.18271 0.82035 0.82206 0.77428 1.91023 1.87082 1.22234 1.48490 1.86306 1.14343 1.49098 1.77935 1.21785 0.76454 0.94564 1.01503 1.19537 0.97098 0.99019 0.95597 1.21303 0.96476 0.99291 0.95260 1.21455 0.96934 0.95782 1.00830 1.21595 0.99724 0.98041 0.93838 1.21464 0.96574 0.99640 0.97063 1.21299 0.96582 0.94136 0.99889 1.23795 1.00009 0.98207 0.96760 1.21257 0.91766 0.98740 0.95723 0.89444 0.91074 0.90275 0.72564 0.84894 0.76870 1.22152 1.22061 0.84818 0.75514 0.85085 0.89680 0.74758 0.89969 0.90352 0.85137 0.84251 0.84121 0.83975 0.84674 0.91230 0.85712 0.83162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.69 9.78 71.23 0.70 1.39 16 2 C -0.12 0.33 5.89 -19.81 -0.12 0.21 16 3 C 0.16 -0.10 6.66 22.63 0.15 0.05 16 4 O -0.50 0.91 11.84 -90.31 -1.07 -0.16 16 5 C -0.15 -0.09 5.27 -19.81 -0.10 -0.19 16 6 C -0.06 -0.02 2.37 71.24 0.17 0.15 16 7 O -0.54 -2.50 12.88 -148.98 -1.92 -4.42 16 8 Si 0.75 0.80 30.23 68.60 2.07 2.87 16 9 C -0.06 -0.16 8.20 22.50 0.18 0.03 16 10 C -0.15 -0.18 5.87 -20.08 -0.12 -0.29 16 11 C 0.56 1.99 7.76 86.72 0.67 2.66 16 12 O -0.57 -6.44 15.98 -3.96 -0.06 -6.50 16 13 N -0.70 1.78 4.91 -443.14 -2.18 -0.40 16 14 C 0.11 -0.35 4.28 45.52 0.19 -0.16 16 15 H 0.10 0.01 7.54 -2.39 -0.02 -0.01 16 16 C -0.14 0.91 7.57 31.12 0.24 1.14 16 17 C 0.13 -0.59 4.00 45.52 0.18 -0.41 16 18 H 0.10 -0.27 8.05 -2.39 -0.02 -0.29 16 19 N -0.68 2.56 4.34 -567.61 -2.46 0.10 16 20 C 0.65 1.55 8.75 129.79 1.14 2.68 16 21 O -0.60 -5.63 16.07 19.81 0.32 -5.31 16 22 O -0.36 -0.30 10.25 -55.40 -0.57 -0.86 16 23 C 0.13 0.03 5.60 71.24 0.40 0.43 16 24 C -0.11 0.05 5.52 -19.86 -0.11 -0.06 16 25 C -0.11 0.10 9.70 22.27 0.22 0.31 16 26 C -0.13 0.30 10.05 22.27 0.22 0.52 16 27 C -0.11 0.34 10.05 22.27 0.22 0.57 16 28 C -0.13 0.41 10.05 22.27 0.22 0.63 16 29 C -0.10 0.21 9.70 22.27 0.22 0.42 16 30 C -0.15 0.65 7.62 31.12 0.24 0.89 16 31 C -0.06 0.19 9.18 22.50 0.21 0.40 16 32 H 0.09 -0.75 8.14 -2.39 -0.02 -0.76 16 33 H 0.07 -0.30 7.52 -2.39 -0.02 -0.32 16 34 H 0.08 -0.60 8.08 -2.39 -0.02 -0.62 16 35 H 0.41 -4.61 9.06 -74.06 -0.67 -5.28 16 36 H 0.13 -0.42 7.82 -2.39 -0.02 -0.44 16 37 H 0.38 0.05 8.70 -74.06 -0.64 -0.60 16 38 H -0.29 -2.17 6.69 99.48 0.67 -1.50 16 39 H -0.29 -2.21 7.11 99.48 0.71 -1.50 16 40 H 0.13 0.61 4.43 -2.91 -0.01 0.60 16 41 H 0.41 -2.52 5.21 -92.71 -0.48 -3.00 16 42 H 0.13 -1.22 8.14 -2.38 -0.02 -1.24 16 43 H 0.08 -0.55 8.13 -2.39 -0.02 -0.57 16 44 H 0.41 -3.11 7.94 -92.71 -0.74 -3.85 16 45 H 0.08 -0.01 8.08 -2.39 -0.02 -0.03 16 46 H 0.08 0.06 8.08 -2.38 -0.02 0.04 16 47 H 0.13 -0.40 8.06 -2.91 -0.02 -0.42 16 48 H 0.14 -0.79 8.06 -2.91 -0.02 -0.81 16 49 H 0.14 -0.95 8.06 -2.91 -0.02 -0.97 16 50 H 0.14 -0.98 8.06 -2.91 -0.02 -1.01 16 51 H 0.14 -0.68 8.06 -2.91 -0.02 -0.70 16 52 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 53 H 0.12 -0.83 8.14 -2.39 -0.02 -0.85 16 54 H 0.15 -1.28 6.39 -2.91 -0.02 -1.30 16 Total: 0.00 -26.61 452.06 -2.29 -28.89 By element: Atomic # 1 Polarization: -24.03 SS G_CDS: -1.54 Total: -25.57 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 5.12 Total: 11.37 kcal Atomic # 7 Polarization: 4.34 SS G_CDS: -4.64 Total: -0.30 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -3.30 Total: -17.26 kcal Atomic # 14 Polarization: 0.80 SS G_CDS: 2.07 Total: 2.87 kcal Total: -26.61 -2.29 -28.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109458_13287732.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.047 kcal (2) G-P(sol) polarization free energy of solvation -26.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds